Geneticist
Western Ecological Research Center
Email:
jrichmond@usgs.gov
Office Phone:
619-225-6434
Fax:
619-225-6436
ORCID:
0000-0001-9398-4894
Location
San Diego State University
4165 Spruance Road
Suite 200
San Diego
, CA
92101
US
Supervisor:
Robert N Fisher
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These data consist of microsatellite genotype scores for all samples of Santa Ana sucker (Catostomus santaanae) used in the study. Scores represent the allele calls for each microsatellite locus (i.e. DNA fragment length containing the microsatellite repeats), with each locus containing two scores representing the two allele copies detected. Included are five tables: Full dataset (includes genotypes from all samples), Santa Clara River samples only (includes genotypes only from samples collected in the Santa Clara River), Convert File format key (explains the data file format), Population identifiers (translates the numerical population identifiers to actual collecting sites), CASA sampling points (one coordinate...
Tags: Los Angeles,
San Gabriel,
Santa Ana,
Santa Clara River watersheds,
USGS Science Data Catalog (SDC), All tags...
admixture,
dendritic network,
endangered species,
fish,
genetics,
hybridization,
metapopulation,
southern California, Fewer tags
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In February 2017, a population of California red-legged frog Rana draytonii was discovered in the southern foothills of the San Bernardino Mountains of Riverside County, California, near the edge of the species’ historic distribution. A few days after the first sightings of R. draytonii at the Whitewater Preserve, we conducted a visual daytime search for frogs, tadpoles and egg masses followed by a nighttime eye shine search for adult frogs. The captured frog weighed, measured (snout-to-urostyle [SU]), sampled for tissue and georeferenced using a GPS unit. Survey work was authorized by a U.S. Fish and Wildlife Service Recovery Permit and a California Department of Fish and Wildlife Scientific Collecting Permit....
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Microsatellite data formatted for the software CONVERT, which includes dataset numerical IDs, sampling site names, and locus identifiers. Rows 291-294 provides information about the allele size ranges and repeat motif for each locus. Missing data are coded as ?.
Categories: Data;
Types: Citation;
Tags: California,
Carrizo Plain,
Cuyama River Watershed,
Gambelia sila,
Panoche Plateau, All tags...
Panoche Valley,
RADseq,
San Joaquin Desert,
San Joaquin Valley,
admixture,
endangered species, Fewer tags
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Microsatellite STRUCTURE input file that corresponds with the samples in the ‘refSampleLoc’ worksheet. Missing data are coded as -999.
Categories: Data;
Types: Citation;
Tags: California,
Carrizo Plain,
Cuyama River Watershed,
Gambelia sila,
Panoche Plateau, All tags...
Panoche Valley,
RADseq,
San Joaquin Desert,
San Joaquin Valley,
admixture,
endangered species, Fewer tags
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Location information regarding samples taken for each individual.
Categories: Data;
Types: Citation;
Tags: California,
Carrizo Plain,
Cuyama River Watershed,
Gambelia sila,
Panoche Plateau, All tags...
Panoche Valley,
RADseq,
San Joaquin Desert,
San Joaquin Valley,
admixture,
endangered species, Fewer tags
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View more...
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