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Genotypes for 253 Atlantic Sturgeon that were submitted by the National Marine Fisheries Service from individuals encountered as mortalities or taken during permitted activities.
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Wastewater-based epidemiology (WBE) is used to determine the consumption of, or exposure to, chemicals or pathogens in human populations, and is conducted by collecting representative samples of untreated wastewater (influent) to quantify pathogens shed in the population served by the sampled wastewater system. The Centers for Disease Control and Prevention (CDC) and the US Department of Health and Human Services (HHS), in collaboration with the United States Geological Survey (USGS) and other agencies throughout the federal government, initiated the National Wastewater Surveillance System (NWSS) in response to the COVID-19 pandemic to conduct WBE using analytical methods for the collection and analysis of SARS-CoV-2...
Categories: Data;
Tags: COVID-19,
Colorado,
Environmental Health,
Missouri,
North Carolina, All tags...
Ohio,
USGS Science Data Catalog (SDC),
Utah,
Wisconsin,
biota,
ddPCR,
epidemiology,
wastewater, Fewer tags
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This dataset includes microsatellite genotypes for 2510 Atlantic sturgeon from 18 different populations distributed from Canada to Georgia. Each individual was genotyped at 12 loci. Additional information about sex, capture date, and size are also provided.
Categories: Data;
Tags: Aquatic Biology,
Atlantic Sturgeon,
Atlantic coast,
Ecology,
Genetics, All tags...
USGS Science Data Catalog (SDC),
environment,
genetic diversity,
microsatellite,
population genetics, Fewer tags
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Data represent results of individual-based assignment tests performed in the program GeneClass for Atlantic Sturgeon of unknown origin. Data for genetic sex are also presented.
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A survey of environmental DNA was performed in Tunison Creek downstream of the USGS Tunison Aquatic Laboratory. The goal of the survey was to characterize the source ecological community at multiple trophic or taxonomic levels by associating DNA fragments with reference databases. Three taxonomically informative genetic loci were used: the mitochondrial cytochrome oxidase 1 locus, the mitochondrial 12S ribosomal locus, and the bacterial/organellar 16S ribosomal locus. The data set includes a list of sample and sequence accessions residing in the National Center for Biotechnology Information databases, which provide the raw data for analysis or re-use. The data also includes the representative sequences of operational...
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