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Genotypes for six rare plant species found in San Diego County in 2016-2017

Dates

Publication Date
Start Date
2016
End Date
2017

Citation

Milano, E.R., and Vandergast, A.G., 2018, Genotypes for six rare plant species found in San Diego County in 2016-2017: U.S. Geological Survey data release, https://doi.org/10.5066/P9OWNCG8.

Summary

To understand the genetic structure of six rare plant species (Acanthomintha ilicifolia, Baccharis vanessae, Chloropyron maritimum ssp. maritimus, Deinandra conjugens, Dicranostegia orcuttiana, Monardella viminea), we obtained samples from known occurrences in San Diego County, prepared and sequenced ddRAD genomic libraries, and developed and analyzed a panel of genetic markers to assess population diversity and divergence. We provide this SNP genotype dataset in Structure format, produced in Stacks v2.0b8, for future monitoring efforts and population genetic analysis. These data support the following publication: Milano, E.R., and Vandergast, A.G., 2018, Population genomic surveys for six rare plant species in San Diego County, California: [...]

Contacts

Originator :
Elizabeth R Milano, Amy Vandergast
Metadata Contact :
Elizabeth R Milano
USGS Mission Area :
Ecosystems
SDC Data Owner :
Western Ecological Research Center
Distributor :
U.S. Geological Survey - ScienceBase

Attached Files

Click on title to download individual files attached to this item.

San_Diego_acil_genotypes_2016_2017.zip 31.47 KB application/zip
San_Diego_bava_genotypes_2016.zip 9.32 KB application/zip
San_Diego_chma_genotypes_2016_2017.zip 18.96 KB application/zip
San_Diego_deco_genotypes_2016.zip 9.92 KB application/zip
San_Diego_dior_genotypes_2016.zip 9.75 KB application/zip
San_Diego_movi_genotypes_2016.zip 15.09 KB application/zip
San_Diego_rareplant_barcodes.zip 14.45 KB application/zip

Purpose

San Diego County has implemented a strategic management plan that identifies species, based on low numbers of occurrences or high risk of threat, for which management practices are recommended. This project aims to provide a reference point for the current status of genetic diversity of rare plant species that will inform future preservation and restoration efforts.

Rights

The authors of these data require that data users contact them regarding intended use and to assist with understanding limitations and interpretation. Unless otherwise stated, all data, metadata and related materials are considered to satisfy the quality standards relative to the purpose for which the data were collected. Although these data and associated metadata have been reviewed for accuracy and completeness and approved for release by the U.S. Geological Survey (USGS), no warranty expressed or implied is made regarding the display or utility of the data on any other system or for general or scientific purposes, nor shall the act of distribution constitute any such warranty. Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government.

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ScienceBase WMS

Communities

  • USGS Data Release Products
  • USGS Western Ecological Research Center

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Additional Information

Identifiers

Type Scheme Key
DOI https://www.sciencebase.gov/vocab/category/item/identifier doi:10.5066/P9OWNCG8

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