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This data table contains mean decomposition rates and mean carbon:nitrogen ratios for different litter types buried in 7 marshes during 2015. Note that C:N data are repeated for low and high marsh areas at each site in the table. These data support the following publication: Janousek, C.N., Buffington, K.J., Guntenspergen, G.R. et al. Ecosystems (2017). doi:10.1007/s10021-017-0111-6. http://link.springer.com/article/10.1007/s10021-017-0111-6
Categories: Data;
Types: Citation;
Tags: Deschampsia cespitosa,
Distichlis spicata,
Pacific coast,
Salicornia pacifica,
carbon cycling,
This data set contains decomposition rates for litter of Salicornia pacifica, Distichlis spicata, and Deschampsia cespitosa buried at 7 tidal marsh sites in 2015. Sediment organic matter values were collected at a subset of sites. These data support the following publication: Janousek, C.N., Buffington, K.J., Guntenspergen, G.R. et al. Ecosystems (2017). doi:10.1007/s10021-017-0111-6. http://link.springer.com/article/10.1007/s10021-017-0111-6
Categories: Data;
Types: Citation;
Tags: Deschampsia cespitosa,
Distichlis spicata,
Pacific coast,
Salicornia pacifica,
carbon cycling,
San Francisco Bay, California is considered a mercury-impaired watershed. Elevated concentrations of mercury are found in water and sediment as well as fish and estuarine birds. Sources of mercury to the watershed since 1845 include sediment-associated mercury from mercury mining, mercury losses from gold amalgamation activities in mines of the Sierra Nevada, aerial deposition of mercury from global and regional emissions to air, and the direct discharge of mercury to Bay waters associated with the urbanization and industrialization of the estuary. We assessed historical trends in mercury bioaccumulation by measuring mercury concentrations in feathers of the endangered California Ridgway’s rail (formerly California...
Tracklines and associated observations were mapped and analyzed using ArcMap (ESRI, Redlands, CA). GPS data were recorded in NAD27 map datum and projected to an USGS Albers Equal Area Conic map projection for presentation and subsequent density analyses. Concatenated GPS and observation data were then used to generate point and line coverages in ArcMap (ESRI, Redlands, CA). We designed a custom analytic tool using ArcMap Model Builder that allows for the construction and export of user-specified and effort-adjusted spatial binning of species observations along continuous trackines. For the purposes of this report, we calculated seabird density estimates and marine mammal counts along continuous 3.0-kilometer and...
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: At-sea suvey,
California Current System,
Channel Islands,
Marine Bird,
marine mammals,
This data table contains results for the 2014 mesocosm tests of inundation effects on decomposition. These data support the following publication: Janousek, C.N., Buffington, K.J., Guntenspergen, G.R. et al. Ecosystems (2017). doi:10.1007/s10021-017-0111-6. http://link.springer.com/article/10.1007/s10021-017-0111-6
Categories: Data;
Types: Citation;
Tags: Deschampsia cespitosa,
Distichlis spicata,
Pacific coast,
Salicornia pacifica,
carbon cycling,
Information about these images can be found in the Final Report for Sea-level Rise Response Modeling for San Francisco Bay Estuary Tidal Marshes. Site-specific data are available by request. Contact: Dr. John Y. Takekawa, USGS Western Ecological Research Center, San Francisco Bay Estuary Field Station, 505 Azuar Dr. Vallejo, Calif. 94592, 707-562-2000
Categories: Data;
Tags: National CASC,
Science Tools For Managers,
Sea-Level Rise and Coasts,
State of the Science,
Water, Coasts and Ice,
[Excerpt from Introduction] "The San Francisco Bay Estuary supports a large and diverse bird community. More than 50% of most Pacific flyway diving duck populations are found in the Estuary during the winter months (Trost 2002; U.S. Fish and Wildlife Service 2002). San Francisco Bay has been designated as a site of international importance for shorebirds (Western Hemisphere Shorebird Reserve Network), supporting millions of individuals (Morrison et al. 2001; Takekawa et al. 2001; Warnock et al. 2002), including species that use tidal marsh habitats. In total, the Bay’s tidal marshes support at least 113 bird species that represent 31 families (Takekawa et al., in press)..."
Categories: Publication;
Types: Citation;
Tags: Habitat Fragmentation,
Human Disturbance,
National CASC,
Population Viability,
Restoration Implications,
Lidar-derived digital elevation models often contain a vertical bias due to vegetation. In areas with tidal influence the amount of bias can be ecologically significant, for example, by decreasing the expected inundation frequency. We generated a corrected digital elevation mode (DEM) for Suisun marsh using a modification of the Lidar Elevation Adjustment with NDVI (LEAN) technique (Buffington et al. 2016). GPS survey data (6912 points, collected across public and private land in 2018), Normalized Difference Vegetation Index (NDVI) derived from an airborne multispectral image (June 2018), a 1 m lidar DEM from September 2018, and a 1 m canopy surface model were used to generate models of predicted bias across the...
Fragmentation and loss of natural habitat have important consequences for wild populations and can negatively affect long-term viability and resilience to environmental change. Salt marsh obligate species, such as those that occupy the San Francisco Bay Estuary in western North America, occupy already impaired habitats as result of human development and modifications and are highly susceptible to increased habitat loss and fragmentation due to global climate change. We examined the genetic variation of the California Ridgway’s rail ( Rallus obsoletus obsoletus), a state and federally endangered species that occurs within the fragmented salt marsh of the San Francisco Bay Estuary. We genotyped 107 rails across 11...
Categories: Data;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Clapper Rail,
Fragmentation,
Microsatellites,
Population declines,
Ridgway’s rail,
This data table contains summary data for temperature time series in near-surface sediments in high and low tidal marsh at 7 sites during 2015. These data support the following publication: Janousek, C.N., Buffington, K.J., Guntenspergen, G.R. et al. Ecosystems (2017). doi:10.1007/s10021-017-0111-6. http://link.springer.com/article/10.1007/s10021-017-0111-6
Categories: Data;
Types: Citation;
Tags: Deschampsia cespitosa,
Distichlis spicata,
Pacific coast,
Salicornia pacifica,
carbon cycling,
This table contains data on dry mass remaining in a subset of Salicornia pacifica and Deschampsia cespitosa litter bags removed over a series of time points spanning 6 months. These data support the following publication: Janousek, C.N., Buffington, K.J., Guntenspergen, G.R. et al. Ecosystems (2017). doi:10.1007/s10021-017-0111-6. http://link.springer.com/article/10.1007/s10021-017-0111-6
Categories: Data;
Types: Citation;
Tags: Deschampsia cespitosa,
Distichlis spicata,
Pacific coast,
Salicornia pacifica,
carbon cycling,
These datasets provide information on plant alpha, beta, and gamma diversity, and plant species abundance at several spatial scales for tidal wetlands along a salinity gradient in the San Francisco Bay-Delta and an impounded brackish wetland complex in Suisun Marsh, California. Files include diversity metrics calculated at the patch, site, and region scales, average percent cover of wetland dominant plants at the patch scale, and average percent cover of all wetland plants at the site scale. These data support the following paper: Jones, S.F., Janousek, C.N., Casazza, M.L., Takekawa, J.Y. and Thorne, K.M., 2021. Seasonal impoundment alters patterns of tidal wetland plant diversity across spatial scales. Ecosphere,...
Categories: Data;
Tags: Botany,
California,
San Francisco Bay-Delta Estuary,
USGS Science Data Catalog (SDC),
biodiversity,
Categories: Publication;
Types: Citation
The San Francisco Bay estuary contains the largest remaining expanse of tidal salt marshes in the western U.S. These marshes are home to a variety of federal and state protected species, such as the California clapper rail, California black rail, and the salt marsh harvest mouse. The estuary is also located on the Pacific Flyway, and is an important site for migrating and wintering birds. As climate conditions change, these salt marshes face a number of threats, including accelerated rates of sea-level rise, shifting precipitation, erosion, and more frequent and intense storms. Seas in the San Francisco Bay estuary have been rising 2.2 centimeters per decade, and could rise by as much as 1.24 meters by 2100, according...
Categories: Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: 2008,
CASC,
Completed,
National CASC,
National CASC,
This summary give a brief overview of the project "Fate of Endangered Species in San Francisco Bay Tidal Marshes with Sea Level Rise".
In the Pacific Northwest, coastal wetlands support a wealth of ecosystem services including habitat provision for wildlife and fisheries and flood protection. The tidal marshes, mudflats, and shallow bays of coastal estuaries link marine, freshwater, and terrestrial habitats and provide economic and recreational benefits to local communities. Climate change effects such as sea-level rise are currently altering these habitats, but we know little about how these areas will change over the next 50-100 years. Our study examined the effects of sea-level rise on nine tidal marshes in Washington and Oregon, with the goal of providing scientific data to support future coastal planning and conservation. We compiled physical...
Categories: Publication;
Types: Citation;
Tags: Northwest CASC,
Sea-Level Rise,
Sea-Level Rise and Coasts,
Water, Coasts and Ice,
Wetlands,
This datasets summarizes small mammal trapping efforts that USGS San Francisco Bay Estuary Field Station has led, co-led, or supervised, to detect and monitor the endangered salt marsh harvest mouse (Reithrodontomys raviventris) in the northern reaches of San Francisco Bay from 1998-2014. As the salt marsh harvest mouse is listed as endangered under the Endangered Species Act, sensitive location information can be made available upon request by contacting the dataset point of contact. These data support the following publication: Marcot, B.G., Woo, I., Thorne, K.M., Freeman, C.M., and Guntenspergen, G.R., 2020. Habitat of the endangered salt marsh harvest mouse (Reithrodontomys raviventris) in San Francisco Bay....
Categories: Data;
Tags: San Francisco Bay,
San Pablo Bay,
USGS Science Data Catalog (SDC),
Wildlife Biology,
biota,
Information about these images can be found in the Final Report for Sea-level Rise Response Modeling for San Francisco Bay Estuary Tidal Marshes. Site-specific data are available by request. Contact: Dr. John Y. Takekawa, USGS Western Ecological Research Center, San Francisco Bay Estuary Field Station, 505 Azuar Dr. Vallejo, Calif. 94592, 707-562-2000
Categories: Data;
Tags: California,
National CASC,
Science Tools For Managers,
Sea-Level Rise and Coasts,
State of the Science,
This dataset contains avian survey observations across four tidal marsh areas around San Francisco Bay. Multiple surveys were conducted around both high and low tides during the winter of 2010/11. Each survey alternated between scan and focals. During scans, all observable birds were counted. During focals, the behavior of a single, randomly selected bird was observed. Water level data was collected concurrently at each site and is provided with the avian survey data. These data support the following publication: Thorne, K.M., Spragens, K.A., Buffington, K.J., Rosencranz, J.A. and Takekawa, J., 2019. Flooding regimes increase avian predation on wildlife prey in tidal marsh ecosystems. Ecology and evolution, 9(3),...
Categories: Data;
Tags: Ecology,
Emergent Tidal Marsh,
Petaluma River,
San Francisco Bay,
USGS Science Data Catalog (SDC),
In California, the near-shore area where the ocean meets the land is a highly productive yet sensitive region that supports a wealth of wildlife, including several native bird species. These saltmarshes, mudflats, and shallow bays are not only critical for wildlife, but they also provide economic and recreational benefits to local communities. Today, sea-level rise, more frequent and stronger storms, saltwater intrusion, and warming water temperatures are among the threats that are altering these important habitats. To support future planning and conservation of California’s near-shore habitats, researchers examined current weather patterns, elevations, tides, and sediments at these sites to see how they affect...
Categories: Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: 2012,
Bolinas Lagoon,
CA,
CASC,
California,
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