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Vegetation type and density data were collected by the U.S. Geological Survey (USGS) Pacific Coastal and Marine Science Center at three locations in the Sacramento-San Joaquin Delta. Data were collected in Lindsey Slough in April 2017, and Middle River and the Mokelumne River in March 2018. Vegetation samples were collected by divers, and used to determine dry biomass density. These data were collected as part of a cooperative project, with the USGS California Water Science Center and the California Department of Fish and Wildlife, on the effects of invasive aquatic vegetation on sediment transport in the Sacramento-San Joaquin Delta.
Categories: Data;
Tags: CMHRP,
Coastal and Marine Hazards and Resources Program,
Invasive Species,
Lindsey Slough,
Marsh,
These data present suspended particle size distributions collected by the U.S. Geological Survey (USGS) Pacific Coastal and Marine Science Center at three locations in the Sacramento-San Joaquin Delta. Data were collected in Lindsey Slough on April 4 and April 18, 2017, and near the mouth of the Mokelumne River and in Middle River on March 14, 2018 by deploying a Sequoia Scientific Laser In-situ Scattering and Transmissometry instrument (LISST 100x) from a small vessel during the deployment of the hydrographic time series data instruments. At each site, data were collected 1 to 2 times, generally near the water surface, at mid depth, and near the sediment bed. These data were collected as part of a study on the...
These data present suspended particle size distributions collected by the U.S. Geological Survey (USGS) Pacific Coastal and Marine Science Center within two embayments of San Francisco Bay. Data were collected at one site in San Pablo Bay and one site in Grizzly Bay from January through February 2020 by deploying a Sequoia Scientific Laser In-situ Scattering and Transmissometry instrument (LISST 200x) from a small vessel near pre-established USGS instrument moorings. At both sites, data were collected on four dates at three depths, generally near the water surface, at mid depth, and near the sediment bed, for 1-3 minutes at each depth. LISST volume concentrations are most accurate when the optical percent transmission...
Water samples were collected in San Pablo Bay and Grizzly Bay on five days from January through June 2020. The water samples were collected from a small vessel near pre-established USGS instrument moorings using a peristaltic pump or a Niskin bottle. Data are provided in a comma-delimited values spreadsheet.
Categories: Data;
Tags: CMHRP,
Coastal and Marine Hazards and Resources Program,
Grizzly Bay,
PCMSC,
Pacific Coastal and Marine Science Center,
We measured currents, suspended-sediment concentration (SSC), bed sediment characteristics, and vegetation biomass density in the Sacramento-San Joaquin Delta in 2017-2018, as part of a project investigating the influence of invasive aquatic vegetation (IAV) on flow and sediment flux. This data release includes data from three sites: Lindsey Slough (April 2017), Middle River (March 2018) and the lower Mokelumne River (March 2018). At all three sites the IAV is dominated by the submerged species Egeria densa. Station locations, instrumentation, and measured variables are detailed on pages for each data type. IAV a poses a growing hazard to navigation, infrastructure, and ecosystems in the Sacramento-San Joaquin...
Hydrodynamic and sediment transport time-series data, including water depth, velocity, turbidity, conductivity, and temperature, were collected by the U.S. Geological Survey (USGS) Pacific Coastal and Marine Science Center within two embayments of San Francisco Bay. Data were collected in San Pablo Bay and Grizzly Bay from June to August 2019 at seven unique stations. Data files are grouped by area (shallows of San Pablo Bay, channel of San Pablo Bay, and shallows of Grizzly Bay). Each shallow site contained a variety of sensors located on two tripods and one surface mooring, while the channel site consisted of one tripod. Users are advised to assess data quality carefully, and to check metadata for instrument information,...
Bed sediment samples were collected in San Pablo Bay and Grizzly Bays on eight days from June through November 2019, to analyze for sediment properties including bulk density, particle size distribution, and percent organic carbon. Sediment samples were collected from a small vessel near pre-established USGS instrument moorings using a Gomex box corer that was subsampled with three push cores (37 mm in diameter) per Gomex core. Six subsamples were collected from the top 5 centimeters (cm) of each push core, a few push cores included the top 8 cm. The top two subsamples were each 0.5 cm thick, and all following subsamples were each 1 cm thick. Push core samples from the first, third, and fifth centimeter depth were...
Categories: Data;
Tags: CMHRP,
Coastal and Marine Hazards and Resources Program,
Grizzly Bay,
PCMSC,
Pacific Coastal and Marine Science Center,
This part of the data release contains high-resolution acoustic-backscatter data collected by the U.S. Geological Survey (USGS) Pacific Coastal and Marine Science Center at three study locations in the Sacramento-San Joaquin Delta, California. Data were collected in Lindsey Slough in April 2017, Middle River in March 2018, and Mokelumne River in March 2018, using an interferometric bathymetric sidescan sonar systems mounted to the USGS R/V Parke Snavely. Data are provided in 1-m resolution GeoTIFF formats. These data were collected as part of a study of the effects of invasive aquatic vegetation on sediment transport in the Sacramento-San Joaquin Delta.
These data present suspended particle size distributions collected by the U.S. Geological Survey (USGS) Pacific Coastal and Marine Science Center within two embayments of San Francisco Bay. Data were collected at one site in San Pablo Bay and one site in Grizzly Bay from June through August 2019, by deploying a Sequoia Scientific Laser In-situ Scattering and Transmissometry instrument (LISST 100x) from a small vessel near pre-established USGS instrument moorings. At both sites, data were collected on six dates at three depths, generally near the water surface, at mid depth, and near the sediment bed, for 1-3 minutes at each depth. LISST volume concentrations are most accurate when the optical percent transmission...
Bed sediment samples were collected in San Pablo Bay and Grizzly Bays on eight days from January through September 2020, to analyze for sediment properties including bulk density, particle size distribution, and percent organic carbon. Sediment samples were collected from a small vessel near pre-established USGS instrument moorings using a Gomex box corer that was subsampled with three push cores (37 mm in diameter) per Gomex core. Six subsamples were collected from the top 5 centimeters (cm) of each push core, a few push cores included the top 8 cm. The top two subsamples were each 0.5 cm thick, and all following subsamples were each 1 cm thick. Push core samples from the first, third, and fifth centimeter depth...
Categories: Data;
Tags: CMHRP,
Coastal and Marine Hazards and Resources Program,
Grizzly Bay,
PCMSC,
Pacific Coastal and Marine Science Center,
Water samples were collected in San Pablo Bay and Grizzly Bay on five days from June through August 2019. The water samples were collected near pre-established USGS instrument moorings with a peristaltic pump or via a Niskin bottle, deployed off of a small vessel. Data are provided in a comma-delimited values spreadsheet.
Categories: Data;
Tags: CMHRP,
Coastal and Marine Hazards and Resources Program,
Grizzly Bay,
PCMSC,
Pacific Coastal and Marine Science Center,
The U.S. Geological Survey Pacific Coastal and Marine Science Center collected hydrodynamic and sediment-transport data at shallow water sites in San Pablo Bay and Grizzly Bay, in northern San Francisco Bay between January and September 2020. The data were collected to determine hydrodynamic forcing, bed roughness, suspended-sediment concentration, and physical properties of the sediment bed. This data release includes hydrodynamic and sediment transport time-series data spanning from January to June 2020, as well as sediment bed properties and water column suspended-sediment concentrations collected on eight days from January to September 2020. Details on station location, instrumentation, and measured variables...
Tags: none
Meteorological data, including wind speed, wind direction, air temperature, relative humidity, and air pressure, were collected by the U.S. Geological Survey (USGS) Pacific Coastal and Marine Science Center at a site located in Grizzly Bay, California. A Vaisala WXT530 meteorological station was mounted atop of a dolphin-type mooring structure, from January to June 2020. The data were truncated based on deployment and recovery times of hydrodynamic time-series data, spurious data points from the wind sensor were removed, and the file was written to netCDF. Spurious points were identified based on a recorded wind speed of 0. These points were set to NaN (Not a Number). Users are advised to assess data quality carefully,...
A three-dimensional hydrodynamic and sediment transport model of San Pablo and Suisun Bays was constructed using the Delft3D4 (D3D) modeling suite (Deltares, 2021a) to simulate water levels, flow, waves, and suspended sediment for time period of Nov 1 to Dec 31, 2014. This data release describes the construction and validation of the model application and provides input files suitable to run the model on D3D software version 4.04.01. Model description The San Pablo and Suisun Bay model was nested within an overall model for San Francisco Bay, also built using D3D. The overall model (figure 1A) was modified from the published tide model for San Francisco Bay (Elias and others, 2013). The 2D tide model was extended...
Hydrodynamic and sediment transport time-series data, including water depth, velocity, turbidity, conductivity, and temperature, were collected by the U.S. Geological Survey (USGS) Pacific Coastal and Marine Science Center at three locations in the Sacramento-San Joaquin Delta. Data were collected in Lindsey Slough in April 2017, and Middle River and the Mokelumne River in March 2018. Data files are grouped by location. At each of the three sites, data were collected at stations outside and within patches of vegetation, to determine how submerged invasive vegetation influences tidal currents and suspended-sediment concentration. The Table below shows the data types collected at each station, and classifies stations...
Categories: Data;
Tags: CMHRP,
CTD,
CTD measurement,
Coastal and Marine Hazards and Resources Program,
Conductivity,
Hydrodynamic and sediment transport time-series data, including water depth, velocity, turbidity, conductivity, and temperature, were collected by the U.S. Geological Survey (USGS) Pacific Coastal and Marine Science Center within two embayments of San Francisco Bay. Data were collected in San Pablo Bay and Grizzly Bay from January to June 2020 at seven locations. Data files are grouped by area (shallows of San Pablo Bay, channel of San Pablo Bay, and shallows of Grizzly Bay). Each shallow site contained a variety of sensors located on two tripods, while the channel site consisted of one tripod. Users are advised to assess data quality carefully, and to check metadata for instrument information, as platform deployment...
Bed sediment samples were collected in Lindsey Slough in April 2017, and Middle River and the Mokelumne River in March 2018, to analyze for sediment properties, including bulk density, particle size distribution, and percent organic carbon. Sediment samples were collected within the vegetation with push corers deployed from a small vessel, and in the unvegetated channel with a Gomex box corer, which was subsampled with three push cores per Gomex core. Data are provided in a comma-delimited values spreadsheet. These data were collected as part of a cooperative project, with the USGS California Water Science Center and the California Department of Fish and Wildlife, on the effects of invasive aquatic vegetation on...
Categories: Data;
Tags: CMHRP,
Coastal and Marine Hazards and Resources Program,
Mokelumne River,
Oceans,
PCMSC,
The U.S. Geological Survey Pacific Coastal and Marine Science Center collected hydrodynamic and sediment-transport data at shallow water sites in San Pablo Bay and Grizzly Bay, in northern San Francisco Bay between June and November 2019. The data were collected to determine hydrodynamic forcing, bed roughness, suspended-sediment concentration, and physical properties of the sediment bed. This data release includes hydrodynamic and sediment transport time-series data spanning from June to August 2019, as well as sediment bed properties and water column suspended-sediment concentrations collected on eight days from June to November 2019. Details on station location, instrumentation, and measured variables are included...
Tags: none
Marshes may drown if they are unable to accrete sediment at the rate of sea level rise, but predicting the rate of sediment accretion at different marshes is challenging because many processes (e.g. tidal range, wave frequency) and conditions (e.g. available sediment, vegetation density, shape of the marsh edge) impact it. The Coupled Ocean-Atmosphere-Wave-Sediment Transport (COAWST, Warner and others 2019; Warner and others 2010) model was used to simulate three-dimensional hydrodynamics, waves, and sediment transport on a marsh platform in an idealized domain. The computational grid was 400 (20) cells in the cross-shore (along-shore) directions with 10 vertical sigma layers, and a cross-shore horizontal resolution...
Categories: Data;
Types: Map Service,
NetCDF OPeNDAP Service,
OGC WMS Layer;
Tags: Earth Science > Oceans > Coastal Processes > Estuaries,
Earth Science > Oceans > Coastal Processes > Marshes,
Earth Science > Oceans > Coastal Processes > Sediment Transport,
Earth Science > Oceans > Coastal Processes > Sedimentation,
Hydrology,
This part of the data release contains high-resolution swath bathymetry data collected by the U.S. Geological Survey (USGS) Pacific Coastal and Marine Science Center at three locations in the Sacramento-San Joaquin Delta. Data were collected in Lindsey Slough in April 2017, Middle River in March 2018, and Mokelumne River in March 2018 using an interferometric bathymetric sidescan sonar systems mounted to the USGS R/V Parke Snavely. Data are provided in 1-m resolution GeoTIFF formats. These data were collected as part of a study on the effects of invasive aquatic vegetation on sediment transport in the Sacramento-San Joaquin Delta.
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