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This data release links benthic macroinvertebrate sites to both the NHDPlus Version 2 and NHDPlus High Resolution Region 02 networks, hereafter referred to as V2 and HR, using the hydrolink methodology. Linked benthic macroinvertebrate sites are those included in the Chesapeake Bay Basin-wide Index of Biotic Integrity (Chessie BIBI) developed by the Interstate Commission on the Potomac River Basin (ICPRB) and available from the Chesapeake Bay Program (https://datahub.chesapeakebay.net/LivingResources). The data set contains a unique sample identifier created by ICPRB, survey program, coordinates of sample, linked V2 COMID and HR Permanent Identifier, and information regarding uncertainty in the attribution. We strongly...
Categories: Data;
Tags: Aquatic Biology,
District of Columbia (national district),
Ecology,
Hydrology,
Maryland (state),
These data were compiled for/to modeling efforts for U.S. Bureau of Reclamation National Environmental Policy Act (NEPA) analyses for the Colorado River in Grand Canyon, Arizona. Objective(s) of our study were to create revised monthly Lake Powell elevations and outflows from Bureau of Reclamation Colorado River Mid-term Modeling System (CRMMS) traces that incorporate the alternatives in the sEIS documents and indicate when potential actions may occur and how that changes water movement and storage. These data represent monthly hydrologies for Lake Powell: inflow, outflow, and elevation forecasts for 2024-2027, as well as volumes of water in outflows for different water mangement strategies in NEPA supplemental...
The document describes the field protocol used during the 2019 field season of the distance sampling pilot project on the Yukon Delta.
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOLOGICAL CLASSIFICATION,
This R code (Nest_Cards_QC.R) is used to process the raw legacy nest card data (1985 - 2019) and produce the quality controlled legacy nest card data for analysis and sharing. This code does not quality control the double searched plots (R2 plots in 1995-99), which is done in the file ‘PrepData.R’. Basic operations include transforming missing value to a common code, transforming other variable to match the data dictionary for nest cards, and resolving non-unique observer initials. The code requires the raw data (“1985-2019_Nest Cards_10-24-19_cleaned.xlsx”) and the table of observer names (“Observer Names_1985-2019_10-24-19.xlsx”). The code writes the QC nest card file “Nest_Cards_1985_2019_QC.csv”. Mostly obseration...
Categories: Data,
Software;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
These data were compiled for modeling efforts of Bureau of Reclamation National Environmental Policy Act (NEPA) analyses for the Colorado River in Grand Canyon, Arizona. Objective(s) of our study were to forecast water temperature, smallmouth bass population growth rate, and smallmouth bass entrainment rates under different water management scenarios. These data represent forecasted smallmouth bass entrainment rates and smallmouth bass population growth rates. Data were collected in 2023 and 2024 by the Bureau of Reclamation CRMMS and then used by the U.S. Geological Survey-Southwest Biological Science Center-Grand Canyon Monitoring & Research Center in the modeling process. These data can be used to evaluate different...
These data were compiled to predict economic impacts to angling in Glen Canyon and whitewater rafting in Grand Canyon. The objective of our study was to estimate recreation impacts, or changes in consumer surplus, under different future Interim Guidelines sEIS and LTEMP sEIS alternatives. These data include monthly impacts in nominal 2022 dollars. These data were created for operations at Glen Canyon Dam for October 2023 through November 2027. These data were created by the U.S. Geological Survey, Southwest Biological Science Center, Grand Canyon Monitoring and Research Center using mathematical modeling methods.
This geopackage contains the density strata that were used to create the Alaska Arctic Coastal Plain Aerial Breeding Pair Survey four-year rotating panel design. This file was derived from a mid-1980’s ArcInfo coverage for the North Slope Eider Survey that was produced through the visual interpretation of 1:250,000-scale LANDSAT imagery and the known nesting density waterfowl in the area.
Categories: Data;
Tags: ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOSPHERE,
BIRDS,
DUCKS/GEESE/SWANS,
R code that takes in the nest capture history data (chdata.csv), reformats it for model fitting in Program Mark via the R package RMark. A series of models of increasing complexity are fit and compared using AIC. Output is written to text files for each model but is generally not used or saved. Code can be run to generate model results and R workspaces/ object to inspect parameter estimates. The primary purpose of this code is to explore model structures for predicting detection and as an attempt to reproduce historically used parameter estimates in past nest plot reports (e.g., Fischer et al. 2017 and earlier). Results from ‘Model 7’ are most similar to detection estimates used in the past.
Categories: Data,
Software;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOLOGICAL CLASSIFICATION,
These are the observer names, observer initials, year, and unique observer number for all observe that collected data on the YKD nest plot project from 1985 to 2019. This data is used with the nest card data to in various ways, but primarily to calculate cumulative observer experience for nest detection rates. This file is also used for quality control and reconciling non-unique observer initials across years.
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
This is the YKD egg observation data reformatted from the nest card data (‘Nest_Cards_1985_2019_QC.csv’). The file eggs.R is used to produce this data set, and then this is further summarized into yearly stats on mean initiation and hatch dates to produce the file yearstats.csv.
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
From 1995 to 1999, a subset of nest plots were searched twice by field crews to estimate nest detection probability by mark-recapture methods. Over the five years, 30 plots were searched twice and over 2700 unique nests were found. From these data, nest detection probability is estimated using a Huggins-type mark recapture model where individual-level covariate effects of nest and observer attributes were estimated. These estimates are then used to predict nest detection rates in other years based on covariates of nests and observers. Nest detection rates are then applied to annual plot search to estimate nest populations for each species in the sampled area.
Categories: Data,
Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
The USGS, in cooperation with the U.S. Bureau of Land Management (BLM), created a series of geospatial mapping products of the Scotts Creek Watershed in Lake County, California, using National Agriculture Imagery Program (NAIP) imagery from 2018, 2020 and 2022 and Open Street Map (OSM) from 2019. The imagery was downloaded from United States Department of Agriculture (USDA) - Natural Resources Conservation Service (NRCS) Geospatial Data Gateway (https://datagateway.nrcs.usda.gov/) and Geofabrik GmbH - Open Street Map (https://www.geofabrik.de/geofabrik/openstreetmap.html), respectively. The imagery was classified using Random Forest (RF) Modeling to produce land cover maps with three main classifications - bare,...
The USGS, in cooperation with the U.S. Bureau of Land Management (BLM), created a series of geospatial products of the Scotts Creek Watershed in Lake County, California, using National Agriculture Imagery Program (NAIP) imagery from 2018, 2020 and 2022. The imagery was downloaded from United States Department of Agriculture (USDA) - Natural Resources Conservation Service (NRCS) Geospatial Data Gateway (https://datagateway.nrcs.usda.gov). The NAIP imagery from 2018, 2020 and 2022 was classified using Random Forest Modeling to produce land cover maps with three main classifications – bare, vegetation, and shadows. A total of 600 independent reference points were used in the accuracy assessment. The overall accuracy...
This collection contains the report log files produced by the R Package “AKaerial” when the QC data were created from the raw transcribed data. The QC log files document the quality control process, data standards, and what changes (if any) were made to the QC data compared to the raw data. Each log file was named following the same file naming conventions: SSSYYYY_QCLog_OOOO, where; YKD=Duck data, YKG=Goose data, YYY=Year, and OOO=observer’s first initial and last name.
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOSPHERE,
BIRDS,
DUCKS/GEESE/SWANS,
R code that takes in the nest capture history data (chdata.csv), reformats it for model fitting in the Bayesian MCMC software JAGS via the R package jagsUI. Various generalized linear mixed models are fit using a Huggins two occasion capture history model structure as in Program Mark. A series of models of increasing complexity are fit and compared using DIC. Model text is written to text files for each model but is generally not used or saved. Posteriors are saved as Rworkspaces or written to text files for use in population estimation (nostpop.R). Code can be run to generate model results and R workspaces/objects to inspect parameter estimates. The primary purpose of this code is to compare various mixed model...
Categories: Data,
Software;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOLOGICAL CLASSIFICATION,
This is the YKD nest card data from 1985 to 2019 produced after processing with the R script “Nest_Cards_QC.R”. This file (‘Nest_Cards_1985_2019_QC.csv’) should be used for producing population estimates and any other analyses. This file is what should generally be distributed for YKD nest card data requests.
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
This multi-layer GeoPackage contains the Alaska Arctic Coastal Plain Aerial Breeding Pair Survey design transects from 2007 to present. The original transects were created as shapefiles and imported to this SQLite database. Transects were saved as individual polylines named according to the year they were created (e.g., “main.ACP_2007_Trans,” “main.ACP_2008_Trans,” “main.ACP_2009_Trans,” etc.). These aerial transects were developed systematically from randomly-selected start points and created along constant lines of latitude. The inter-transect spacing in the low, medium, high, and very-high density strata varies so that areas with higher waterfowl density are surveyed more intensively. The current four-year rotating...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOSPHERE,
BIRDS,
DATA ANALYSIS AND VISUALIZATION,
This data release contains phytoplankton data and vertical profile measurements of water quality and light in oligotrophic (low nutrient) lakes within the Adirondack Park, New York State. Data were collected between June and October 2021 at five lakes. Four lake locations (Nearshore, Open Water, Layer, Bloom) were sampled representing one of four sample types (Bottom Sediment, Surface Water, Bloom Material, Layer). Water-quality field parameters (water temperature, dissolved-oxygen concentration and percent saturation, pH, specific conductance, turbidity, chlorophyll fluorescence, phycocyanin fluorescence, and fluorescent dissolved organic material) were measured at each sampling location from the surface to the...
Categories: Data;
Types: ArcGIS REST Map Service,
ArcGIS Service Definition,
Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Adirondack Park,
Algal concentration,
Blue Mountain Lake,
Blue-green algae,
Brant Lake,
This multi-layer GeoPackage contains the YKD Coastal Zone Survey design transects from 1985 to present. The original transects were imported to this SQLite database structure and saved as individual polylines named according to the year they were created (e.g., “main.YK_1985_Trans,” “main.YK_1986_Trans,” “main.YK_1987_Trans,” etc.). The aerial transects were developed systematically from randomly-selected start points and created along constant lines of latitude. The inter-transect spacing in the low, medium, high, and very-high density strata varies so that areas with higher waterfowl density are surveyed more intensively. Though the overall study area never changed, the YKD Survey design was modified several times,...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOSPHERE,
BIRDS,
DUCKS/GEESE/SWANS,
This R code (eggs.R) inputs the quality controlled nest card data and (1) performs additional quality control on the egg code data, (2) reformat the eggs data into a tidy file of egg observations, (3) summarizes egg data into yearly means of initiation and hatch date based on incubation model, and (4) writes csv files for tidy egg data (eggs.csv) and yearly nest stats (yearstats.csv).
Categories: Data,
Software;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
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