Filters: Tags: Genetic diversity (X) > Date Range: {"choice":"year"} (X)
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We investigated fine-scale genetic patterns of the federally threatened Eastern Massasauga Rattlesnake (Sistrurus catenatus) on a relatively undisturbed island in northern Michigan, USA. This species often persists in habitat islands throughout much of its distribution due to extensive habitat loss and distance-limited dispersal. These data are from 102 individual Eastern Massasauga Rattlesnakes sampled at Bois Blanc Island, Michigan and genotyped at 15 microsatellite loci. Samples were collected as part of a study to examine functional connectivity for the Eastern Massasauga. We found that the entire island population exhibited weak genetic structuring with spatially segregated variation in effective migration...
The data release details the samples, methods, and raw data used to generate high-quality genome assemblies for greater sage-grouse (Centrocercus urophasianus), white-tailed ptarmigan (Lagopus leucura), and trumpeter swan (Cygnus buccinator). The raw data have been deposited in the Sequence Read Archive (SRA) of the National Center for Biotechnology Information (NCBI), the authoritative repository for public biological sequence data, and are not included in this data release. Instead, the accessions that link to those data via the NCBI portal (www.ncbi.nlm.nih.gov) are provided herein. The release consists of a single file, sample.metadata.txt, which maps NCBI accessions to the samples sequenced and the different...
These are genetic data collected from replicated samples of 21 Enteroctopus (E. dofleini or a cryptic lineage) in Prince William Sound Alaska to evaluate tissue type, DNA extraction method, and time until analyses are completed on data reliability. Data collected from all samples include two microsatellites identified as possible lineage indicators, and nine microsatellite loci previously identified as polymorphic in both lineages. DNA sequence data from 528 bp of the octopine dehydrogenase (OCDE) gene were also collected.
Categories: Data;
Tags: Amino Acid Oxidoreductases,
Animals/Invertebrates,
Bald Head Chris Island,
Biodiversity,
Biodiversity,
These data were compiled to investigate the evolutionary history of Hilaria jamesii, Hilaria mutica, and Hilaria rigida. The data release consists of two tab delimited text files that may be used to infer population structure (viva_structure.stru) or relationships among sampling localities (viva.phylip). Files record genetic variation on an individual (.stru) or sampling locality (.phylip) level. These files may be opened and edited in a text editor program, such as Notepad ++ (PC) or BBEdit (Mac). The .phylip file can be uploaded to phyML or SVDQuartets to generate a tree-based visualization of relationships ( http://www.atgc-montpellier.fr/phyml/ or https://paup.phylosolutions.com, repectively). The .stru file...
These data reflect nuclear microsatellite genotypes for specimens of yellow rails (Coturnicops noveboracensis) sampled in 2005-2008. Data from six populations are included.
This data set describes nuclear microsatellite genotypes derived from eleven autosomal loci (Lar24, Lar12, Lar26, Lar19, Rbg13, K16, Rbg18, Hg18, Hg16, Hg25, Rbg29). A total of 651 Larus gulls were examined for this study with samples collected throughout North America, Europe, Russia, and South America.
We used 7 microsatellites to characterize the invasion genetics of 528 American bullfrogs sampled from the Yellowstone River floodplain (Montana). American bullfrog samples were collected from a 140 km section of the Yellowstone River near Billings, MT in 2013 - 2017.
Categories: Data;
Tags: Billings,
Montana,
USGS Science Data Catalog (SDC),
Yellowstone,
aquatic biology,
Abstract (from http://onlinelibrary.wiley.com/doi/10.1111/gcb.12850/abstract): Understanding how climatic variation influences ecological and evolutionary processes is crucial for informed conservation decision-making. Nevertheless, few studies have measured how climatic variation influences genetic diversity within populations or how genetic diversity is distributed across space relative to future climatic stress. Here, we tested whether patterns of genetic diversity (allelic richness) were related to climatic variation and habitat features in 130 bull trout ( Salvelinus confluentus) populations from 24 watersheds (i.e., ~4–7th order river subbasins) across the Columbia River Basin, USA. We then determined whether...
Categories: Publication;
Types: Citation;
Tags: Fish,
Northwest CASC,
Rivers, Streams and Lakes,
Water, Coasts and Ice,
Wildlife and Plants,
The federally endangered Cape Sable seaside sparrow (Ammospiza maritima mirabilis) is endemic to the Greater Everglades ecosystem in southern Florida. The subspecies inhabits the fragmented freshwater marl prairies and contains six subpopulations (A-F), named for management purposes, since genetic information is lacking. To evaluate genetic connectivity and inform management decisions, feather samples were collected between 2011 and 2018 from 108 sparrows across five subpopulations (A-E). Sequence data for four mitochondrial DNA markers (N = 36–69) and 12 nuclear microsatellite loci (N = 55) are provided. The mitochondrial markers used were Cytochrome b (Cytb), control region D-loop, NADH dehydrogenase 2 (ND2),...
Abstract: Accelerating climate change and other cumulative stressors create an urgent need to understand the influence of environmental variation and landscape features on the connectivity and vulnerability of freshwater species. Here, we introduce a novel modeling framework for aquatic systems that integrates spatially-explicit, individual-based, demographic and genetic (demogenetic) assessments with environmental variables. To show its potential utility, we simulated a hypothetical network of 19 migratory riverine populations (e.g., salmonids) using a riverscape connectivity and demogenetic model (CDFISH). We assessed how stream resistance to movement -- a function of water temperature, fluvial distance, and...
Categories: Publication;
Types: Citation;
Tags: Connectivity,
Dispersal,
Fish,
Gene flow,
Genetic diversity,
These data represent nuclear microsatellite data collected from four riparian plant species that occur in and around Grand Canyon National Park: Populus fremontii (POFR), Salix gooddingii (SAGO), Salix exigua (SAEX), and Prosopis glandulosa (PRGL). These data were collected for population genetic analysis to help inform native plant material development in Grand Canyon National Park. Leaf samples were collected at sites spanning 470 km of the Colorado River between Glen Canyon Dam and Lake Mead and in tributaries. Known revegetation areas were not sampled. We aimed to collect leaf tissue from at least 15 individuals at each sample site. If there were fewer than 15 individuals per species at a site, leaf tissue was...
Hair samples were collected in discrete areas during radio-collar studies in Vermont under the auspices of University of Vermont IACUC protocol #17-035 (n=106), New Hampshire (n=34), and Maine (n=57). Hair and tissue samples were opportunistically collected from animals that were harvested, died in vehicle collisions, or translocated throughout Vermont (n = 105), Quebec (n = 198), Massachusetts (n = 5), and New York (n = 24). Of the 317 previously identified autosomal moose SNPs, 136 loci were utilized to develop a MALDI-TOF MS genotyping assay. After filtering problematic loci and individuals, genotypes from 112 of 136 SNPs (82%) were obtained for 507 individuals and all loci met Hardy-Weinberg expectations in...
Conservation translocations are a common wildlife management tool that can be difficult to implement and evaluate for effectiveness. Genetic information can provide unique insight regarding local impact of translocations (e.g., presence and retention of introduced genetic variation) and identifying suitable source and recipient populations (e.g., adaptive similarity). We developed two genetic data sets and wrote statistical code to evaluate conservation translocation effectiveness into the isolated northwestern region of the greater sage-grouse (Centrocercus urophasianus) distribution and to retrospectively evaluate adaptive divergence among source and recipient populations. Our first data set was microsatellite-based...
The U.S. Fish and Wildlife Service and the Puerto Rico Department of Natural and Environmental Resources need to develop a plan of action to help the recovery of two endangered species in the genus Eleutherodactylus (commonly known as “coqui”), while also reducing the risk that 14 other coqui species would be added to the Endangered Species list. Prior work by these researchers has identified factors influencing life history for three representative species (E. wightmanae, E. britonni, and E. antillensis) including where species occur, their abundance, and key drivers of reproduction, all of which are driven by climate and land use change. For this next research stage, this project will: (1) characterize the ability...
Categories: Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: 2019,
CASC,
Conservation,
Drought,
Drought, Fire and Extreme Weather,
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