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Although polygyny can potentially increase male reproductive success, the benefits of this strategy could be offset by losses to extra-pair paternity or reduced offspring survival. We developed microsatellite markers to assess the influence of extrapair offspring (EPO) on reproductive success and paternity in monogamous and polygynous pairs of the facultatively polygynous Southwestern Willow Flycatcher (Empidonax traillii extimus). Based on genotypes of 140 offspring from 56 clutches over six years, 14% of nestlings in our study population were extra-pair offspring, with 23% of all successful nests containing at least one EPO. We found that polygynous males produced 2.11 0.35 offspring per season, compared to 1.15...