Filters: Tags: RIVERS/STREAM (X)
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This R code (Nest_Cards_QC.R) is used to process the raw legacy nest card data (1985 - 2019) and produce the quality controlled legacy nest card data for analysis and sharing. This code does not quality control the double searched plots (R2 plots in 1995-99), which is done in the file ‘PrepData.R’. Basic operations include transforming missing value to a common code, transforming other variable to match the data dictionary for nest cards, and resolving non-unique observer initials. The code requires the raw data (“1985-2019_Nest Cards_10-24-19_cleaned.xlsx”) and the table of observer names (“Observer Names_1985-2019_10-24-19.xlsx”). The code writes the QC nest card file “Nest_Cards_1985_2019_QC.csv”. Mostly obseration...
Categories: Data,
Software;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
This is the quality controlled YKD salinity data for fixed and random plots 2006 - 2019. These data are quality controlled using the R code in the file ‘YKDsalinity_QC.R’ to produce the data used for analysis and sharing (‘YKDsalinity_QC.R’). These data should be what is used for analysis or distributed on request.
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: BIOSPHERE,
BIOSPHERE,
BIOSPHERE,
Data,
EARTH SCIENCE,
The document describes the field protocol used during the 2019 field season of the distance sampling pilot project on the Yukon Delta.
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOLOGICAL CLASSIFICATION,
The Rio Grande/Río Bravo is the lifeline of the region, including the Chihuahuan Desert, supplying drinking water for more than 6 million people, including numerous Native American tribes, and irrigating about 2 million acres of land. The river also forms about 1250 miles of the international border between the United States and Mexico from El Paso/Ciudad Juarez to the Gulf of Mexico. The Rio Grande/Río Bravo and its tributaries are increasingly stressed by growing water demands, invasive species, and alterations that impact its flow and water quality.These stressors are likely to be exacerbated by extreme droughts and floods.The South Central Climate Science Center (SC CSC) has funded projects to synthesize the...
Categories: Data,
Project;
Tags: 2016,
2017,
2018,
Academics & scientific researchers,
Data Acquisition and Development,
A brief overview of the Ecological Assessment of Mainstem Big Rivers in the Gulf Coastal Plains and Ozarks geography.
Stream fragmentation alters the structure of aquatic communities on a global scale, generally through loss of native species. Among riverscapes in the Great Plains of North America, stream fragmentation and hydrologic alteration (flow regulation and dewatering) are implicated in the decline of native fish diversity. This study documents the spatio–temporal distribution of fish reproductive guilds in the fragmented Arkansas and Ninnescah rivers of south-central Kansas using retrospective analyses involving 63 years of fish community data. Pelagic-spawning fishes declined throughout the study area during 1950–2013, including Arkansas River shiner (Notropis girardi) last reported in 1983, plains minnow (Hybognathus...
Categories: Data,
Publication;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: CATFISHES/MINNOWS,
Colorado,
Colorado,
FISH,
Federal resource managers,
Habitat fragmentation and flow regulation are significant factors related to the decline and extinction of freshwater biota. Pelagic-broadcast spawning cyprinids require moving water and some length of unfragmented stream to complete their life cycle. However, it is unknown how discharge and habitat features interact at multiple spatial scales to alter the transport of semi-buoyant fish eggs. Our objective was to assess the relationship between downstream drift of semi-buoyant egg surrogates (gellan beads) and discharge and habitat complexity. We quantified transport time of a known quantity of beads using 2–3 sampling devices at each of seven locations on the North Canadian and Canadian rivers. Transport time was...
Summary of project, results, and discussion for the study completed by Shannon K. Brewer, Thomas A. Worthington, Timothy B. Grabowski, Julia Mueller, Nicole Farless, and Mark S. Gregory. Summary written by the Great Plains Landscape Conservation Cooperative (GP LCC).
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: CATFISHES/MINNOWS,
Federal resource managers,
Final Report,
Final Report,
GPLCC,
Rate of global biodiversity loss increased significantly during the 20th century associated with human environmental alterations. Specifically, mismanagement of freshwater resources contributed to historical and contemporary loss of stream-dwelling fish diversity and will likely play a role in determining the persistence of species in the future. We present a mechanistic pathway by which human alteration of streams has caused the decline of a unique reproductive guild of Great Plains stream-dwelling fishes, and suggest how future climate change might exacerbate these declines. Stream fragmentation related to impoundments, diversion dams and stream dewatering are consequences of increasing demand for freshwater resources...
Categories: Data,
Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: 2010,
AR-04,
CATFISHES/MINNOWS,
CO-03,
CT-04,
We propose to use long-term fish-population data from a relict reach of the Pecos River, New Mexico to assess population dynamics of imperiled prairie-river minnows, including Arkansas River shiner. Development of viable management strategies requires basic understanding of population ecology. Rigorous, quantitative ecological methods can be used to analyze continuous, long-term demographic data, but such data are rarely available for imperiled, non-game fishes. Data available for the Pecos River provide a unique opportunity to apply quantitative methods to prairie-river minnow conservation and management. Analyses proposed here would determine (1) whether population regulation is density dependent or flow-regime...
Categories: Data,
Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: 2013,
Arkansas River shiner (Notropis girardi),
Arkansas River shiner (Notropis girardi),
CATFISHES/MINNOWS,
Climate Change,
Genetic, demographic, and environmental processes affect natural populations synergistically, and understanding their interplay is crucial for the conservation of biodiversity. Stream fishes in metapopulations are particularly sensitive to habitat fragmentation because persistence depends on dispersal and colonization of new habitat but dispersal is constrained to stream networks. Great Plains streams are increasingly fragmented by water diversion and climate change, threatening connectivity of fish populations in this ecosystem. We used seven microsatellite loci to describe population and landscape genetic patterns across 614 individuals from 12 remaining populations of Arkansas darter ( Etheostoma cragini) in...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: CATFISHES/MINNOWS,
Climate Change,
Colorado,
Colorado,
Data,
The Gulf Coastal Plains and Ozarks (GCPO) region is, to a large extent, defined by its mainstem big rivers, with eight of the largest ten rivers (by discharge) in the lower U.S. terminating here. Those rivers are the Mississippi, Ohio, Missouri, Tennessee, Mobile, Atchafalaya, Red, and Arkansas. Whilethis assessment focuses on rivers of the MAV, the analysis has also been extended to big rivers throughout the GCPO.People have historically altered large river systems through the construction of levees and floodways, channelization, and dredging to support agriculture, navigation, commerce, and to provide greater stability and protection from flooding. Many large rivers in the GCPO are, in fact, part of theinland...
R code that takes in the nest capture history data (chdata.csv), reformats it for model fitting in Program Mark via the R package RMark. A series of models of increasing complexity are fit and compared using AIC. Output is written to text files for each model but is generally not used or saved. Code can be run to generate model results and R workspaces/ object to inspect parameter estimates. The primary purpose of this code is to explore model structures for predicting detection and as an attempt to reproduce historically used parameter estimates in past nest plot reports (e.g., Fischer et al. 2017 and earlier). Results from ‘Model 7’ are most similar to detection estimates used in the past.
Categories: Data,
Software;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOLOGICAL CLASSIFICATION,
These are the observer names, observer initials, year, and unique observer number for all observe that collected data on the YKD nest plot project from 1985 to 2019. This data is used with the nest card data to in various ways, but primarily to calculate cumulative observer experience for nest detection rates. This file is also used for quality control and reconciling non-unique observer initials across years.
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
This R code (YKDsalinity_QC.R) is used to process the raw legacy salinity data for fixed and random plots (2006 - 2019) and produce the quality controlled legacy salinity data for analysis and sharing (YKDsalinity_QC.csv). Basic operations include transforming missing value to a common code, transforming other variables to match the data dictionary, and cleaning spatial location issues. Of special note is that this QC process discover significant error in location data due to a variety of reasons so the random plot centers are added to the data table and should be used for analysis. The code requires the raw data (“Official_YKD.SALINITY.DATA.MASTER.2020.csv”), a definition of the nest plot study area (“NestPlotStudyAreaBoundary.geojson”),...
Categories: Data,
Software;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: BIOSPHERE,
BIOSPHERE,
BIOSPHERE,
DATA INTEROPERABILITY,
DATA INTEROPERABILITY,
This is the YKD egg observation data reformatted from the nest card data (‘Nest_Cards_1985_2019_QC.csv’). The file eggs.R is used to produce this data set, and then this is further summarized into yearly stats on mean initiation and hatch dates to produce the file yearstats.csv.
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
From 1995 to 1999, a subset of nest plots were searched twice by field crews to estimate nest detection probability by mark-recapture methods. Over the five years, 30 plots were searched twice and over 2700 unique nests were found. From these data, nest detection probability is estimated using a Huggins-type mark recapture model where individual-level covariate effects of nest and observer attributes were estimated. These estimates are then used to predict nest detection rates in other years based on covariates of nests and observers. Nest detection rates are then applied to annual plot search to estimate nest populations for each species in the sampled area.
Categories: Data,
Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
Biodiversity in stream networks is threatened globally by interactions between habitat fragmentation and altered hydrologic regimes. In the Great Plains of North America, stream networks are fragmented by 19,000 anthropogenic barriers, and flow regimes are altered by surface water retention and groundwater extraction. We documented the distribution of anthropogenic barriers and dry stream segments in five basins covering the central Great Plains to assess effects of broad-scale environmental change on stream fish community structure and distribution of reproductive guilds. We used an information theoretic approach to rank competing models in which fragmentation, discharge magnitude, and percentage of time streams...
Categories: Data,
Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: 2012,
CATFISHES/MINNOWS,
CO-01,
CO-02,
CO-03,
Potamodromous migrations, those that occur entirely in fresh waters, are made by a variety of minnows (Family Cyprinidae) in, and between, freshwater habitats around the world. These migrations most commonly are undertaken for purposes of breeding, feeding, or occupying specific habitats or refugia. There is a growing body of evidence that potamodromous migrations are undertaken by a number of cyprinids native to larger streams and rivers of the Great Plains region of central USA. Cross et al. (1985) observed that populations of Arkansas River shiner disappeared from large tributaries to the Arkansas River, in Kansas, as a result of dam construction and water withdrawal. They speculated that populations in these...
Categories: Data,
Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: 2011,
Arkansas River shiner (Notropis girardi),
Arkansas River shiner (Notropis girardi),
CATFISHES/MINNOWS,
Decision Support,
The Arkansas River Shiner (ARS), Notropis girardi, is a federally threatened minnow that now occurs natively in modest numbers only in the South Canadian River, following decades of range contraction and population losses. The remaining populations are at increasing risk as global change is expected to impact the upper and middle South Canadian River with a rise in temperature as much as 4-6 F and a decrease in precipitation from 10 to 35 % in this century. The primary objective of this project was to evaluate potential effects of habitat and environmental change on Arkansas River shiners by examination of habitat use and availability at several spatial scales using both historical and recently-collected data from...
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