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As part of the hydrodynamic and sediment transport investigations in San Pablo Bay and China Camp Marsh, California, particle size distributions of bed sediments were measured at most instrumented stations and are presented in a comma-delimited values spreadsheet. This portion of the data release presents San Pablo Bay and China Camp Marsh sediment particle size distributions from samples collected during multiple instrument deployments. Users are advised to check the data carefully for sampling time, location, and reference information.
This project assessed the potential effects of climate change on tidal marsh habitats and bird populations, identified priority sites for tidal marsh conservation and restoration, and developed a web-based mapping tool for managers to interactively display and query results. Project results can be found at PRBO’s San Francisco Bay Sea-Level Rise Website
Categories: Data,
Project;
Tags: 2010,
2013,
Applications and Tools,
CA,
California Landscape Conservation Cooperative,
This project designed a monitoring program and protocol to detect the effects of climate change on tidal marsh bird population abundance and distribution. It is a companion to “Tidal Marsh Bird Population and Habitat Assessment for San Francisco Bay under Future Climate Change Conditions” and will build on its products, enabling evaluation of the long-term viability of four tidal-marsh bird species threatened by impacts of climate change: Clapper Rail, Black Rail, Common Yellowthroat, and Song Sparrow (three endemic subspecies: San Pablo, Suisun, and Alameda). Information is available through the California Avian Data Center. See also: http://data.prbo.org/apps/sfbslr/index.php?page=lcc-page
Categories: Data,
Project;
Tags: 2010,
CA,
California Landscape Conservation Cooperative,
Conservation NGOs,
Datasets/Database,
The Sacramento / San Joaquin River Delta (SSJRD) is contaminated with legacy mercury (Hg) from historical mining and mineral processing activities throughout the watershed, as well as from contemporary atmospheric and industrial inputs. The current project was designed for the purpose of developing high-resolution spatial and temporal models for estimating concentrations of mercury species in surface waters of the SSJRD. The field component of the project brings together three high-resolution platforms for collecting water-quality data (fixed continuous monitoring stations (CMS) outfitted with in-situ sensors, spatial mapping using boat-mounted flow-through sensors, and satellite-based remote sensing) coupled with...
Categories: Data;
Tags: California,
Environmental Health,
Geochemistry,
Lower Sacramento,
Remote Sensing,
Sediment particles can strongly bind metals, effectively repartitioning them from solution to a solid phase. As a result, sediments may accumulate and retain metals released to an aquatic environment. Sediment cores provide a historical record of metal inputs that can reveal anthropogenic influences (Förstner and Wittmann, 1979). Specifically, studies of sediment cores in San Francisco Bay chronicled metal inputs and suggested that legacy contamination can remain a chronic source of metals to the system owing to sediment mixing and redistribution (Hornberger and others, 1999; Van Geen and Luoma, 1999). Metals in sediments also indicate exposure levels to benthic animals through contact with, and ingestion of, bottom...
Fragmentation and loss of natural habitat have important consequences for wild populations and can negatively affect long-term viability and resilience to environmental change. Salt marsh obligate species, such as those that occupy the San Francisco Bay Estuary in western North America, occupy already impaired habitats as result of human development and modifications and are highly susceptible to increased habitat loss and fragmentation due to global climate change. We examined the genetic variation of the California Ridgway’s rail ( Rallus obsoletus obsoletus), a state and federally endangered species that occurs within the fragmented salt marsh of the San Francisco Bay Estuary. We genotyped 107 rails across 11...
Categories: Data;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Clapper Rail,
Fragmentation,
Microsatellites,
Population declines,
Ridgway’s rail,
This portion of the data release presents orthomosaic images of the Whale's Tail Marsh region of South San Francisco Bay, CA. The orthomosaics have resolutions of 2.5 centimeters per pixel and were derived from structure-from-motion (SfM) processing of repeat aerial imagery collected from fixed-wing aircraft. The raw imagery used to create these elevation models was acquired from an approximate altitude of 427 meters (1,400 feet) above ground level (AGL), using a Hasselblad A6D-100c camera fitted with an HC 80 lens, resulting in a nominal ground-sample-distance (GSD) of 2.5 centimeters per pixel. The acquisition flight lines were designed to provide approximately 50 percent overlap between adjacent flight lines...
Categories: Data;
Tags: Alameda County,
Alameda Creek,
Bathymetry and Elevation,
CHMRP,
Coastal and Marine Hazards and Resources Program,
The urbanized area of downtown Menlo Park is subject to persistent flooding and sediment deposition by San Francisquito Creek in South San Francisco Bay. To mitigate these events, a suite of cores was collected in 2002 at the mouth of the creek to determine sediment depositional rates on the delta. One of those cores (721-1) was selected for microbiological (pollen, diatoms, and foraminifera) and geochemical analyses to reconstruct a depositional record over the past two millennia. This data release provides radiocarbon dates, census counts of benthic foraminifera, diatoms, and palynomorphs, and the measurement of anthropogenic metals and other elements in sediments from this core.
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: CMHRP,
Coastal and Marine Hazards and Resources Program,
Habitat,
Hooks Point,
Invertebrates,
A one- and two-dimensional hydrodynamic model of the San Francisco Bay and Delta was constructed using the Delft3D Flexible Mesh Suite (Delft3D FM; Kernkamp and others, 2011; https://www.deltares.nl/en/software/delft3d-flexible-mesh-suite/) to simulate still water levels. Required model input files are provided to run the model for the time period from October 1, 2018, to April 30, 2019. This data release describes the construction and validation of the model application and provides input files suitable to run the model on Delft3D FM Suite 2020.04. Model Description The San Francisco Bay and Delta Still Water Level Model (SFBD-SWL) utilizes the open-source Delft3D Flexible Mesh Suite (Delft3D FM; Kernkamp and...
This project evaluates the effects of global climate change and sea level rise on estuarine intertidal habitat in the San Francisco Bay and the Pacific Flyway migratory waterbirds that rely on this habitat. Phase 2 of this project is a continuation of work to evaluate the effects of global climate change and sea level rise (SLR) on intertidal shoals in the San Francisco Bay Estuary and the migratory waterbirds that rely on this critically important resource in the Pacific Flyway. The primary objectives are to: 1) use downscaled global climate change models to translate SLR and climate scenarios into habitat quantity predictions through Delft3D and Dflow-FM (unstructured grid) geomorphic modeling; 2) model the response...
Categories: Data,
Project;
Tags: 2010,
2012,
Applications and Tools,
CA,
California Landscape Conservation Cooperative,
The dataset documents the spatial and temporal variability of nutrients and related water quality parameters at high spatial resolution in the San Francisco Bay of California, USA in 2021 and 2022. The dataset includes nitrate, temperature, conductivity, dissolved oxygen, and chlorophyll as well as information about phytoplankton community composition. Data-collection cruises were conducted under different environmental/flow conditions. Version history: On 3/15/24, the provisional data files hosted on this webpage were removed, and replaced with updated finalized files.
Categories: Data;
Tags: California,
San Francisco Bay,
San Pablo Bay,
Suisun Bay,
USGS Science Data Catalog (SDC),
The main goal of this project is to ensure that the 2011-13 climate change update to the Baylands Ecosystem Habitat Goals Report (Baylands Goals) and other key, ongoing conservation activities in the San Francisco Bay region use the latest information about the current and future status of San Francisco Bay tidal marsh ecosystems, particularly in the context of sea-level rise. The main product of the project is the improved Sea Level Rise (SLR) Tool, specifically upgraded to inform the Baylands Goals Report update. The tool will continue to be available online at www.prbo.org/sfbayslr. All data layers going into the tool are and will continue to be downloadable from the site.
This portion of the data release presents digital surface models (DSM) of the Whale's Tail Marsh region of South San Francisco Bay, CA. The DSMs have resolutions of 5 centimeters per pixel and were derived from structure-from-motion (SfM) processing of repeat aerial imagery collected from fixed-wing aircraft. Unlike a digital elevation model (DEM), a DSM represents the elevation of the highest object within the bounds of a cell. Vegetation, structures, and other objects have not been removed from the data. The raw imagery used to create these elevation models was acquired from an approximate altitude of 427 meters (1,400 feet) above ground level (AGL), using a Hasselblad A6D-100c camera fitted with an HC 80 lens,...
Categories: Data;
Tags: Alameda County,
Alameda Creek,
Bathymetry and Elevation,
CHMRP,
Coastal and Marine Hazards and Resources Program,
Elemental chemistry and weight percent of the less than 0.063 mm fine sediment fraction are reported for surface sediments from shoals, the ebb tide delta, local tributaries, and inland rivers that carry sediment to San Francisco Bay, California.
Categories: Data;
Tags: Alameda Creek,
CMHRP,
Coastal and Marine Hazards and Resources Program,
Corte Madera Creek,
Fort Funston,
This data release provides 210Pb and 137Cs measurements in sediments of a core obtained off San Francisquito Creek in South San Francisco Bay.
Categories: Data;
Tags: CMHRP,
Coastal and Marine Hazards and Resources Program,
Hooks Point,
PCMSC,
Pacific Coastal and Marine Science Center,
Bed sediment samples were collected in San Pablo Bay and Grizzly Bays on eight days from June through November 2019, to analyze for sediment properties including bulk density, particle size distribution, and percent organic carbon. Sediment samples were collected from a small vessel near pre-established USGS instrument moorings using a Gomex box corer that was subsampled with three push cores (37 mm in diameter) per Gomex core. Six subsamples were collected from the top 5 centimeters (cm) of each push core, a few push cores included the top 8 cm. The top two subsamples were each 0.5 cm thick, and all following subsamples were each 1 cm thick. Push core samples from the first, third, and fifth centimeter depth were...
Categories: Data;
Tags: CMHRP,
Coastal and Marine Hazards and Resources Program,
Grizzly Bay,
PCMSC,
Pacific Coastal and Marine Science Center,
A model application using the phase-averaged wave model SWAN (in Delft3D) was developed to simulate wind waves in South San Francisco Bay, California, between 30 May 2021 and 19 May 2022. This data release describes the development of the model application, provides input files, and includes output from the model simulations in netCDF format. Model Application The model application included two domains (Fig. 1) that were 1-way coupled. The coarse overall model domain (wsfb_g1.grd) included the coastal ocean across the entire San Francisco Sacramento/San Joaquin Bay-Delta region was forced along the oceanic boundaries with measured time-varying, spatially uniform wave parameters derived from the Coastal Data Information...
Categories: Data;
Tags: CMHRP,
Coastal and Marine Hazards and Resources Program,
Geomorphology,
PCMSC,
Pacific Coastal and Marine Science Center,
The U.S. Geological Survey, Western Ecological Research Center collected sediment and accretion data at a wave-exposed tidal salt marsh in South San Francisco Bay, California. Sediment traps and feldspar marker horizons (MH) were deployed along transects of increasing distance from the sediment source, at primary, secondary and tertiary marsh channels/bay. Data were collected bi-monthly over two month periods in summer 2021 and winter 2021/2022. Included here are trap and MH plot locations, calculated sediment fluxes at each station by deployment period, annual accretion rates, and covariates associated with sediment deposition and accretion including vegetation structure and elevation. This project aimed to assess...
Categories: Data;
Tags: Ecology,
Eden Landing Ecological Reserve,
High Salt Marsh,
Land Use Change,
San Francisco Bay,
This data release provides census counts of diatoms in sediments of a core obtained off San Francisquito Creek in South San Francisco Bay.
Categories: Data;
Tags: CMHRP,
Coastal and Marine Hazards and Resources Program,
Habitat,
Hooks Point,
Invertebrates,
A high-resolution (10-meter per pixel) digital elevation model (DEM) was created for the Sacramento-San Joaquin Delta using both bathymetry and topography data relative to current modern datum of North American Vertical Datum of 1988 (NAVD88). This DEM is the result of collaborative efforts of the U.S. Geological Survey (USGS) and the California Department of Water Resources (DWR). The base of the DEM is from a 10-m DEM released in 2004 and updated in 2005 (Foxgrover and others, 2005) that used Environmental Systems Research Institute (ESRI), ArcGIS Topo to Raster module to interpolate grids from single beam bathymetric surveys collected by DWR, the Army Corp of Engineers (COE), the National Oceanic and Atmospheric...
Categories: Data;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: American River,
Bathymetry and Elevation,
Echo Sounders,
Fremont Weir,
GPS (Global Positioning System),
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