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Hillshade of lidar-derived, bare earth digital elevation model, with 235-degree azimuth and 20-degree sun angle, 0.25m resolution, depicting earthquake effects following the August 24, 2014 South Napa Earthquake.
Categories: Data;
Types: Citation,
Downloadable,
GeoTIFF,
Map Service,
Raster;
Tags: California,
Napa,
Napa County,
San Francisco Bay,
earthquake occurrences,
New active-source shallow seismic (shear-wave and acoustic-wave) measurements were obtained at 18 prioritized seismic monitoring station locations in the north San Francisco Bay area to measure site-specific ground motion amplification effects, soil depth, depth to bedrock (Z1.0 Vs=1 km/s), calculate site specific velocity-depth profiles and Vs30, and develop NEHRP site classifications for each location. This study was led by Principal Investigators Jamey Turner, Cooper Brossy, and Daniel O’Connell and field data were acquired by Glendon Adams and Lincoln Steele. Seismic monitoring sites that recorded high PGA values during the M6.0 Napa earthquake, proximal to higher population densities, and sites recommended...
Categories: Data;
Types: Citation,
Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: California,
EHP,
Earthquake Hazards Program,
GHSC,
Geologic Hazards Science Center,
San Francisco Bay, California is considered a mercury-impaired watershed. Elevated concentrations of mercury are found in water and sediment as well as fish and estuarine birds. Sources of mercury to the watershed since 1845 include sediment-associated mercury from mercury mining, mercury losses from gold amalgamation activities in mines of the Sierra Nevada, aerial deposition of mercury from global and regional emissions to air, and the direct discharge of mercury to Bay waters associated with the urbanization and industrialization of the estuary. We assessed historical trends in mercury bioaccumulation by measuring mercury concentrations in feathers of the endangered California Ridgway’s rail (formerly California...
As part of the hydrodynamic and sediment transport investigations in San Pablo Bay and China Camp Marsh, California, particle size distributions of bed sediments were measured at most instrumented stations and are presented in a comma-delimited values spreadsheet. This portion of the data release presents San Pablo Bay and China Camp Marsh sediment particle size distributions from samples collected during multiple instrument deployments. Users are advised to check the data carefully for sampling time, location, and reference information.
Measurements of suspended sediment concentration, water velocity, suspended-sediment particle size, and suspended-sediment particle settling velocity were collected to estimate suspended-sediment flux and investigate sediment transport processes at Dumbarton Bridge in San Francisco Bay (NWIS station 373015122071000) from calendar year 2018 to 2019. Data were collected using: stationary and boat-mounted acoustic Doppler current meters (ADCP, a 1 MHz Nortek Aquadopp and a 1200kHz Teledyne RiverPro, respectively), four stationary and one profiling multiparameter water quality profiling sondes (YSI 6920), a stationary acoustic backscattering sensor (ABS, Sequoia LISST-ABS), a stationary laser diffraction particle size...
The Hamilton Wetland Restoration Project (HWRP) is a joint venture between the US Army Corps of Engineers (USACE; San Francisco District) and the California State Coastal Conservancy. The site is located on the property of the former Hamilton Army Airfield in Novato, California, along the western edge of San Pablo Bay, which is part of northern San Francisco Bay. The initial stages of wetland restoration, which included dredged sediment reuse, took place during 2009–2011. From 2011 until April 2014, the site was maintained as partially flooded through a temporary one-way culvert that allowed bay water onto the site. On April 25th, 2014, the outboard levee towards the north-eastern corner of the site was breached...
Categories: Data,
Data Release - Revised;
Tags: Novato,
San Francisco Bay,
San Pablo Bay,
USGS Science Data Catalog (SDC),
biochemistry,
This project assessed the potential effects of climate change on tidal marsh habitats and bird populations, identified priority sites for tidal marsh conservation and restoration, and developed a web-based mapping tool for managers to interactively display and query results. Project results can be found at PRBO’s San Francisco Bay Sea-Level Rise Website
Categories: Data,
Project;
Tags: 2010,
2013,
Applications and Tools,
CA,
California Landscape Conservation Cooperative,
We conducted a multi-year study (2010–2012) to investigate diel patterns of specific incubation behaviors of nesting black-crowned night-herons Nycticorax nycticorax (hereinafter night-herons) on Alcatraz Island, California. This dataset includes hourly percentages of specific incubation behaviors (i.e. inactivity, vigilance, preening, and nest maintenance) from ~230 video-monitored nest days across 83 nests (18 in 2010, 30 in 2011, and 35 in 2012).
Categories: Data;
Types: Citation;
Tags: Alcatraz Island,
Black-crowned night herons,
San Francisco Bay,
incubation behavior,
nesting gulls,
Benthic invertebrate communities are monitored because the composition of those communities can affect and be affected by the water quality of an aquatic system. Benthic communities use and sometimes regulate the cycling of essential elements (for example, carbon). Benthic invertebrate taxa may also indicate acute and chronic stressors in an environment because they accumulate contaminants and can respond – sometimes dramatically - to oligotrophic and eutrophic conditions. Benthic communities affect water quality by grazing pelagic food resources and increasing the rate of nutrient regeneration through feeding and bioturbating sediments. South San Francisco Bay is a system dependent on phytoplankton as the base...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Alviso Slough,
Annelids,
Aquatic Biology,
Benthic Ecosystems,
Benthos,
A Gust erosion chamber was used to apply horizontal shear stress to sediment cores obtained from San Pablo and Grizzly (within Suisun) Bays in California. A pair of sediment cores were collected from the same approximate locations in each bay six times between June 12th, 2019 and August 15th, 2019 for a total of 12 experiments and 24 sediment core results. Locations were chosen to capture the benthic variability along the estuarine salinity gradient, are established benthic monitoring stations, proximity to historic/restored wetlands, and practicality for field operations. Sampling dates targeted spring and neap tide conditions. An onshore experiment was conducted on each core to apply shear stresses with stepwise...
Categories: Data;
Tags: CAWSC,
California Water Science Center,
Fine Unconsolidated Substrate,
Grizzly Bay,
Gust chamber,
Note: This data release has been superseded by version 3.0, available here: https://doi.org/10.5066/P9Q2YP9K. The Hamilton Wetland Restoration Project (HWRP) is a joint venture between the US Army Corps of Engineers (USACE; San Francisco District) and the California State Coastal Conservancy. The site is located on the property of the former Hamilton Army Airfield in Novato, California, along the western edge of San Pablo Bay, which is part of northern San Francisco Bay. The initial stages of wetland restoration, which included dredged sediment reuse, took place during 2009–2011. From 2011 until April 2014, the site was maintained as partially flooded through a temporary one-way culvert that allowed bay water onto...
Categories: Data,
Data Release - Revised;
Tags: Geochemistry,
Novato,
San Francisco Bay,
San Pablo Bay,
USGS Science Data Catalog (SDC),
Lidar-derived digital elevation models often contain a vertical bias due to vegetation. In areas with tidal influence the amount of bias can be ecologically significant, for example, by decreasing the expected inundation frequency. We generated a corrected digital elevation mode (DEM) for tidal marsh areas around San Francisco Bay using the Lidar Elevation Adjustment with NDVI (LEAN) technique (Buffington et al. 2016). Survey-grade GPS survey data (6614 points), NAIP-derived Normalized Difference Vegetation Index, and original 1 m lidar DEM from 2010 were used to generate a model of predicted bias across tidal marsh areas. The predicted bias was then subtracted from the original lidar DEM and merged with the NOAA...
Categories: Data;
Types: ArcGIS REST Map Service,
ArcGIS Service Definition,
Downloadable,
GeoTIFF,
Map Service,
Raster;
Tags: Remote Sensing,
San Francisco Bay,
USGS Science Data Catalog (SDC),
biota,
digital elevation models,
The goal of this study was to develop a suite of inter-related water quality monitoring approaches capable of modeling and estimating the spatial and temporal gradients of particulate and dissolved total mercury (THg) concentration and particulate and dissolved methyl mercury (MeHg) concentration in surface waters across the Sacramento / San Joaquin River Delta (SSJRD). This suite of monitoring approaches included: a) data collection at fixed continuous monitoring stations (CMS) outfitted with in-situ sensors, b) spatial mapping using boat-mounted, flow-through, sensors and c) satellite-based remote sensing. The focus of this specific Child Page is to present all data collected during the underway boat mapping component...
Categories: Data;
Tags: California,
Lower Sacramento,
Sacramento,
San Francisco Bay,
San Joaquin Delta,
The goal of this study was to develop a suite of inter-related water quality monitoring approaches capable of modeling and estimating the spatial and temporal gradients of particulate and dissolved total mercury (THg) concentration, and particulate and dissolved methyl mercury (MeHg), concentration, in surface waters across the Sacramento / San Joaquin River Delta (SSJRD). This suite of monitoring approaches included: a) data collection at fixed continuous monitoring stations (CMS) outfitted with in-situ sensors, b) spatial mapping using boat-mounted flow-through sensors, and c) satellite-based remote sensing. The focus of this specific Child Page is to present all field and laboratory-based data associated with...
Categories: Data;
Tags: Lower Sacramento,
San Francisco Bay,
San Joaquin Delta,
chemical analysis,
datasets,
This project designed a monitoring program and protocol to detect the effects of climate change on tidal marsh bird population abundance and distribution. It is a companion to “Tidal Marsh Bird Population and Habitat Assessment for San Francisco Bay under Future Climate Change Conditions” and will build on its products, enabling evaluation of the long-term viability of four tidal-marsh bird species threatened by impacts of climate change: Clapper Rail, Black Rail, Common Yellowthroat, and Song Sparrow (three endemic subspecies: San Pablo, Suisun, and Alameda). Information is available through the California Avian Data Center. See also: http://data.prbo.org/apps/sfbslr/index.php?page=lcc-page
Categories: Data,
Project;
Tags: 2010,
CA,
California Landscape Conservation Cooperative,
Conservation NGOs,
Datasets/Database,
The Sacramento / San Joaquin River Delta (SSJRD) is contaminated with legacy mercury (Hg) from historical mining and mineral processing activities throughout the watershed, as well as from contemporary atmospheric and industrial inputs. The current project was designed for the purpose of developing high-resolution spatial and temporal models for estimating concentrations of mercury species in surface waters of the SSJRD. The field component of the project brings together three high-resolution platforms for collecting water-quality data (fixed continuous monitoring stations (CMS) outfitted with in-situ sensors, spatial mapping using boat-mounted flow-through sensors, and satellite-based remote sensing) coupled with...
Categories: Data;
Tags: California,
Environmental Health,
Geochemistry,
Lower Sacramento,
Remote Sensing,
Sediment particles can strongly bind metals, effectively repartitioning them from solution to a solid phase. As a result, sediments may accumulate and retain metals released to an aquatic environment. Sediment cores provide a historical record of metal inputs that can reveal anthropogenic influences (Förstner and Wittmann, 1979). Specifically, studies of sediment cores in San Francisco Bay chronicled metal inputs and suggested that legacy contamination can remain a chronic source of metals to the system owing to sediment mixing and redistribution (Hornberger and others, 1999; Van Geen and Luoma, 1999). Metals in sediments also indicate exposure levels to benthic animals through contact with, and ingestion of, bottom...
Fragmentation and loss of natural habitat have important consequences for wild populations and can negatively affect long-term viability and resilience to environmental change. Salt marsh obligate species, such as those that occupy the San Francisco Bay Estuary in western North America, occupy already impaired habitats as result of human development and modifications and are highly susceptible to increased habitat loss and fragmentation due to global climate change. We examined the genetic variation of the California Ridgway’s rail ( Rallus obsoletus obsoletus), a state and federally endangered species that occurs within the fragmented salt marsh of the San Francisco Bay Estuary. We genotyped 107 rails across 11...
Categories: Data;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Clapper Rail,
Fragmentation,
Microsatellites,
Population declines,
Ridgway’s rail,
Estuaries provide critical habitat for a vast array of fish and wildlife but are also a nexus for core economic activities that mobilize and concentrate contaminants that can threaten aquatic species. Selenium (Se), an essential element and potent reproductive toxin, is enriched in parts of the San Francisco Estuary (SFE) to levels known to cause toxicity, yet the risk of Se to species that inhabit the SFE is not well understood. We quantified Se concentrations in muscle, liver, and ovary of the demersal cyprinid Sacramento Splittail from six regions in the SFE at three time points (fall 2010-11, spring 2017) to evaluate Se exposure risk. Here we report fish morphological attributes, total selenium concentrations...
The dataset includes three separate excel spreadsheets which provides waterbird (and predator) observations within individual survey units during the May 2019 breeding waterbird survey of south San Francisco Bay (2019WaterbirdSurveyFullData.xlsx), the total number of American avocets, black-necked stilts, and Forster's terns within each pond unit surveyed during the May 2019 survey (2019WaterbirdSurveyPondModel.xlsx), and the annual total number of nests for American avocets, black-necked stilts, and Forster's terns in south San Francisco between 2005 and 2019 (SouthBayWaterbirdNests2005-2019.xlsx). These data support the following publication: Hartman, C.A., Ackerman, J.T., Schacter, C.R., Herzog, M.P., Tarjan,...
Categories: Data;
Tags: San Francisco Bay,
USGS Science Data Catalog (SDC),
Wildlife Biology,
biota,
birds,
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