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Location Folder Show Tree ROOT ScienceBase Catalog Users Filters Date Range Past year (4) Past month (1) Past week (0) Past day (0) Custom range... To   Search Types Citation (1) Contacts Fort Collins Science Center Ecosystems U.S. Geological Survey - ScienceBase U.S. Geological Survey Helen R Sofaer More... Categories Data Release - Revised (1) Tag Types Theme (12) Place (12) Harvest Set (9) USGS Scientific Topic Keyword (4) Tag Schemes None (12) Common geographic areas (6) ISO 19115 Topic Category (10) USGS Thesaurus (3) The National Map Collection Thesaurus (1) View Results as: JSON ATOM CSV Browse Folder

Data associated with Sofaer and Jarnevich 'Accounting for sampling patterns reverses the relative importance of trade and climate for the global sharing of exotic plants' These data were analyzed for the publication 'Accounting for sampling patterns reverses the relative importance of trade and climate for the global sharing of exotic plants': Aim: Exotic species’ distributions reflect patterns of human-mediated dispersal, species’ climatic tolerances, and a suite of other biotic and abiotic factors. The relative importance of each of these factors will shape how the spread of exotic species is affected by ongoing economic globalization and climate change. However, patterns of trade may be correlated with variation in scientific sampling effort globally, potentially confounding studies that do not account for sampling patterns. Location: Global. Methods: We used data from the Global... Categories: Data; Types: Citation; Tags: Global, USGS Science Data Catalog (SDC), ecology, macroecology, nonindigenous species, All tags... sampling bias, species richness, Fewer tags Data to create and evaluate distribution models for invasive species for different geographic extents We developed habitat suitability models for invasive plant species selected by Department of Interior land management agencies. We applied the modeling workflow developed in Young et al. 2020 to species not included in the original case studies. Our methodology balanced trade-offs between developing highly customized models for a few species versus fitting non-specific and generic models for numerous species. We developed a national library of environmental variables known to physiologically limit plant distributions (Engelstad et al. 2022 Table S1: https://doi.org/10.1371/journal.pone.0263056) and relied on human input based on natural history knowledge to further narrow the variable set for each species before... Categories: Data; Tags: Contiguous United States, Eastern sage, Ecology, Great Basin, Great Plains, All tags... Habitat suitability, Invasive, SAHM, Species Distribution Modeling, USGS Science Data Catalog (SDC), United States, VisTrails, Fewer tags Thresholded abundance models for three invasive plant species in the United States We developed habitat suitability models for three invasive plant species: stiltgrass (Microstegium vimineum), sericea lespedeza (Lespedeza cuneata), and privet (Ligustrum sinense). We applied the modeling workflow developed in Young et al. 2020, developing similar models for occurrence data, but also models trained using species locations with percent cover ≥10%, ≥25%, and ≥50%. We chose predictors from a national library of environmental variables known to physiologically limit plant distributions (Engelstad et al. 2022 Table S1) and relied on human input based on natural history knowledge to further narrow the variable set for each species before developing habitat suitability models. We developed models using... Categories: Data; Tags: Botany, Contiguous United States, Ecology, Land Use Change, Remote Sensing, All tags... SAHM, Species Distribution Modeling, USGS Science Data Catalog (SDC), United States, VisTrails, biota, habitat suitability, invasive, Fewer tags 1. Occurrence data to train models for woody riparian native and invasive plant species in the conterminous western USA We developed habitat suitability models for occurrence of three invasive riparian woody plant taxa of concern to Department of Interior land management agencies, as well as for three dominant native riparian woody taxa. Study taxa were non-native tamarisk (saltcedar; Tamarix ramosissima, Tamarix chinensis), Russian olive (Elaeagnus angustifolia) and Siberian elm (Ulmus pumila) and native plains/Fremont cottonwood (Populus deltoides ssp. monilifera and ssp. wislizenii, Populus fremontii), narrowleaf cottonwood (Populus angustifolia), and black cottonwood (Populus balsamifera ssp. trichocarpa and ssp. balsamifera). We generally followed the modeling workflow developed in Young et al. 2020. We developed models using... Categories: Data; Tags: Elaeagnus angustifolia, Populus spp., SAHM, Software for Assisted Habitat Modeling, Species Distribution modeling, All tags... Tamarix spp., Ulmus pumila, United States, VisTrails, biota, habitat suitability, invasive plants, riparian, Fewer tags Data for modeling tegu lizard distributions in the Americas This data bundle contains some of the inputs, all of the processing instructions and all outputs from a single VisTrails/SAHM workflow. This model specifically includes field data of thinned occurrence locations and random background locations and un-thinned occurrence locations and targeted background locations for three species of tegu lizards in South America. Predictors included bioclimatic, tree cover, season length, potential evapotranspiration and solar radiation index rasters. Details about both inputs are included in the associated manuscript. The three bundle documentation files are: 1) '_archive_bundle_metadata.xml' (this file) which contains FGDC metadata describing the archive bundle. 2) 'PredictorList.csv'... Categories: Data; Tags: North America, SAHM, Salvator merianae, Salvator rufescens, Software for Assisted Habitat Modeling, All tags... South America, Species Distribution modeling, Tegu lizards, Tupinambis teguixin, USGS Science Data Catalog (SDC), VisTrails, biota, Fewer tags Data for modeling fountain grass and bishop's goutweed in the contiguous US This data bundle contains the merged data sets to create models for bishop's goutweed and fountaingrass using the VisTrails:SAHM [SAHM 2.1.0]. We developed species distribution models for both species following a workflow designed to balance automation and human intervention to produce models for invasive plant species of concern to U.S. land managers. Location data came from existing databases aggregating species occurrence information. Predictors came from a national library of potential environmental variables based on what environmental factors might limit plant species' distributions in different parts of the U.S. including climatic, topographic, soil, land use, and anthropogenic factors. The outputs of these... Categories: Data; Tags: Aegopodium podagraria, Joshua Tree National Park, Joshua Tree National Park, CA, Pennisetum setaceum, Pictured Rocks National Lakeshore, All tags... Pictured Rocks National Lakeshore, MI, SAHM, Software for Assisted Habitat Modeling, Species Distribution modeling, USGS Science Data Catalog (SDC), VisTrails, biota, fountaingrass, goutweed, habitat suitability, Fewer tags INHABIT species potential distribution across the contiguous United States (ver. 3.0, February 2023) We developed habitat suitability models for invasive plant species selected by Department of Interior land management agencies. We applied the modeling workflow developed in Young et al. 2020 to species not included in the original case studies. Our methodology balanced trade-offs between developing highly customized models for a few species versus fitting non-specific and generic models for numerous species. We developed a national library of environmental variables known to physiologically limit plant distributions (Engelstad et al. 2022 Table S1: https://doi.org/10.1371/journal.pone.0263056) and relied on human input based on natural history knowledge to further narrow the variable set for each species before... Categories: Data, Data Release - Revised; Tags: Contiguous United States, SAHM, Species Distribution Modeling, USGS Science Data Catalog (SDC), United States, All tags... VisTrails, biota, habitat suitability, invasive, Fewer tags First and Second Record of US-RIIS Vascular Plant Species in Contiguous United States This is a dataset containing the first and second record of georeferenced observations of introduced and invasive vascular plant species in the contiguous United States (CONUS). Non-native plant species were identified using the United States Register of Introduced and Invasive Species (US-RIIS) list. After identifying a list of plants non-native to CONUS, we obtained presence data from aggregated occurrence databases, ensuring the occurrences we acquired were georeferenced (i.e., had coordinate information) and had an observation year recorded. We also identified and removed records that might indicate cultivation. From these data, the first and second record were removed and isolated. This data set contains the... Categories: Data; Tags: Botany, Contiguous United States, First record, Invasive species, USGS Science Data Catalog (SDC), All tags... United States, Vascular plants, biota, Fewer tags 3. Hydrologic unit (HUC6) summaries of models for woody riparian native and invasive plant species in the conterminous western USA We developed habitat suitability models for occurrence of three invasive riparian woody plant taxa of concern to Department of Interior land management agencies, as well as for three dominant native riparian woody taxa. Study taxa were non-native tamarisk (saltcedar; Tamarix ramosissima, Tamarix chinensis), Russian olive (Elaeagnus angustifolia) and Siberian elm (Ulmus pumila) and native plains/Fremont cottonwood (Populus deltoides ssp. monilifera and ssp. wislizenii, Populus fremontii), narrowleaf cottonwood (Populus angustifolia), and black cottonwood (Populus balsamifera ssp. trichocarpa and ssp. balsamifera). We generally followed the modeling workflow developed in Young et al. 2020. We developed models using... Categories: Data; Tags: Elaeagnus angustifolia, Populus spp., SAHM, Software for Assisted Habitat Modeling, Species Distribution modeling, All tags... Tamarix spp., Ulmus pumila, United States, VisTrails, biota, habitat suitability, invasive plants, riparian, Fewer tags Management summary table for INHABIT species potential distribution across the contiguous United States: additional management units We developed habitat suitability models for invasive plant species selected by Department of Interior land management agencies. We applied the modeling workflow developed in Young et al. 2020 to species not included in the original case studies. Our methodology balanced trade-offs between developing highly customized models for a few species versus fitting non-specific and generic models for numerous species. We developed a national library of environmental variables known to physiologically limit plant distributions (Engelstad et al. 2022 Table S1) and relied on human input based on natural history knowledge to further narrow the variable set for each species before developing habitat suitability models. We developed... Categories: Data; Tags: Botany, Contiguous United States, Ecology, Remote Sensing, SAHM, All tags... Species Distribution Modeling, USGS Science Data Catalog (SDC), United States, VisTrails, biogeography, biota, habitat suitability, invasive species, modeling, Fewer tags Non-native and synanthropic bird data derived from 2010-2012 Breeding Bird Survey and associated landscape metrics from 2011 NLCD Locations of and proportional abundance of non-native and synanthropic passerines were extracted from Breeding Bird Survey (BBS) data from 2010-2012. Information characterizing the spatial variation and the associated amount, aggregation, and diversity of developed and agricultural land cover types was extracted from the National Land Cover Datasets of 2011. Data supported analyses in the publication: Sofaer, H.R., C.H. Flather, C.S. Jarnevich, K.P. Davis, and L. Pejchar. Human-associated species dominate passerine communities across the United States. Global Ecology and Biogeography. Categories: Data; Tags: National Land Cover Database (NLCD) - 2011, USGS Science Data Catalog (SDC), avian communities, boundaries, conterminous US, All tags... land use and land cover, Fewer tags 2. Independent occurrence data for model assessment for woody riparian native and invasive plant species in the conterminous western USA We developed habitat suitability models for occurrence of three invasive riparian woody plant taxa of concern to Department of Interior land management agencies, as well as for three dominant native riparian woody taxa. Study taxa were non-native tamarisk (saltcedar; Tamarix ramosissima, Tamarix chinensis), Russian olive (Elaeagnus angustifolia) and Siberian elm (Ulmus pumila) and native plains/Fremont cottonwood (Populus deltoides ssp. monilifera and ssp. wislizenii, Populus fremontii), narrowleaf cottonwood (Populus angustifolia), and black cottonwood (Populus balsamifera ssp. trichocarpa and ssp. balsamifera). We generally followed the modeling workflow developed in Young et al. 2020. We developed models using... Categories: Data; Tags: Elaeagnus angustifolia, Populus spp., SAHM, Software for Assisted Habitat Modeling, Species Distribution modeling, All tags... Tamarix spp., Ulmus pumila, United States, VisTrails, biota, habitat suitability, invasive plants, riparian, Fewer tags