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We are working to incorporate environmental DNA (eDNA) data into the Nonindigenous Aquatic Species (NAS) database, which houses over 570,000 records of nonindigenous species nationally, and already is used by a broad user-base of managers and researchers regularly for invasive species monitoring. eDNA studies have allowed for the identification and biosurveillance of numerous invasive and threatened species in managed ecosystems. Managers need such information for their decision-making efforts, and therefore require that such data be produced and reported in a standardized fashion to improve confidence in the results. As we work to gain community consensus on such standards, we are finalizing the process for submitting...
Categories: Project;
Tags: 2020,
All Funded Projects,
Best Practices,
Completed,
Data and Information Assets
The purpose of this study is to understand how the USGS is using decision support, learning from successes and pitfalls in order to help streamline the design and development process across all levels of USGS scientific tool creation and outreach. What should researchers consider before diving into tool design and development? Our goal is to provide a synthesis of lessons learned and best practices across the spectrum of USGS decision support efforts to a) provide guidance to future efforts and b) identify knowledge gaps and opportunities for knowledge transfer and integration. Principal Investigator : Amanda E Cravens Co-Investigator : Nicole M Herman-Mercer, Amanda Stoltz
Wildfires affect streams and rivers when they burn vegetation and scorch the ground. This makes floods more likely to happen and reduces water quality. Public managers, first responders, fire scientists, and hydrologists need timely information before and after a fire to plan for floods and water treatment. This project will create a method to combine national fire databases with the StreamStats water web mapping application to help stakeholders make informed decisions. When the project is finished, people will be able to use StreamStats to estimate post-wildfire peak flows in streams and rivers for most of the United States (where data is available). There will also be tools that allow users to trace upstream and...
Categories: Project;
Tags: 2020,
All Funded Projects,
Completed,
Computational Tools and Services,
Web Application
This project aimed to advance the long-standing need for a more formalized approach to data management planning at the science center (program) level in USGS. The study used two different science centers as test cases. Improved planning for data management and data integration is identified in the Bureau science strategy goals (U.S. Geological Survey, 2007; Burkett and others, 2011) with the need for consistent and unified data management to allow for accessible and high confidence data and information from the USGS science community. Principal Investigator : Thomas E Burley, Stan Smith Benefits Two data management models for other science centers to use Data management framework tested by use case scenario ...
Mobile application to collect national consistent data of fish passage barriers in the United States
This project created a mobile application to collect nationally consistent data of fish passage barriers in the United States to meet needs for hydrologic and ecological assessments and conservation planning decisions. Principal Investigator : David R Maltby, Andrea Ostroff Benefits Meets high priority need for hydrological and ecological assessments Data available to conservation planners Expand USGS scientific and technical support to the National Fish Habitat Action Plan Deliverables Presentation given at CDI-hosted Webinar (September 2012) Available to both iPhone (iOS6) and Android (3.0 or higher). Uses the geo-locational services provides with HTML5 to correlate location with an online data entry form...
Categories: Project;
Tags: 2012,
All Funded Projects,
Completed,
Computational Tools and Services,
Mobile Application
CDI helped fund development of the USGS Geo Data Portal in 2010. In 2012, CDI funded two projects to increase the functionality of the Geo Data Portal. The Resources section below contains links to the Geo Data Portal website and deliverables from the 2012 projects. Principal Investigator : David L Blodgett Description of the Geo Data Portal from the Geo Data Portal documentation home : The USGS Geo Data Portal (GDP) project provides scientists and environmental resource managers access to downscaled climate projections and other data resources that are otherwise difficult to access and manipulate. This user interface demonstrates an example implementation of the GDP project web-service software and standards-based...
Categories: Project;
Tags: 2010,
2012,
All Funded Projects,
Completed,
Computational Tools and Services,
FAIR is an international set of principles for improving the findability, accessibility, interoperability, and reusability of research data and other digital products. The PIs for this CDI project planned and hosted a workshop of USGS data stakeholders, data professionals, and managers of USGS data systems from across the Bureau’s Mission Areas. Workshop participants shared case studies that fostered collaborative discussions, resulting in recommended actions and goals to make USGS research data more FAIR. Project PIs are using the workshop results to produce a roadmap for adopting FAIR principles in USGS. The FAIR Roadmap will be foundational to FY2021 CDI activities to ensure the persistence and usability of...
Categories: Project;
Tags: 2019,
All Funded Projects,
Best Practices,
Completed,
Data and Information Assets,
Recent open data policies of the Office of Science and Technology Policy (OSTP) and Office of Management and Budget (OMB), which were fully enforceable on October 1, 2016, require that federally funded information products (publications, etc.) be made freely available to the public, and that the underlying data on which the conclusions are based must be released. A key and relevant aspect of these policies is that data collected by USGS programs must be shared with the public, and that these data are subject to the review requirements of Fundamental Science Practices (FSP). These new policies add a substantial burden to USGS scientists and science centers; however, the upside of working towards compliance with...
Categories: Project;
Tags: 2016,
All Funded Projects,
Best Practices,
Completed,
Computational Tools and Services,
Over the last few years, the ISO 19115 family of metadata standards has become the predominantly accepted worldwide standard for sharing information about the availability and usability of scientific datasets among researchers. The U.S. interests in the ISO standard have also been growing as global-scale science demands participation with the broader international community; however, adoption has been slow because of the complexity and rigor of the ISO metadata standards. In addition, support for the standard in current implementations has been minimal. Principal Investigator : Stan Smith, Joshua Bradley Cooperator/Partner : Chis Turner In 2009, the Alaska Data Integration Working Group members (ADIwg) mobilized...
Inventories of landslides and liquefaction triggered by major earthquakes are key research tools that can be used to develop and test hazard models. To eliminate redundant effort, we created a centralized and interactive repository of ground failure inventories that currently hosts 32 inventories generated by USGS and non-USGS authors and designed a pipeline for adding more as they become available. The repository consists of (1) a ScienceBase community page where the data are available for download and (2) an accompanying web application that allows users to browse and visualize the available datasets. We anticipate that easier access to these key datasets will accelerate progress in earthquake-triggered ground...
Categories: Project;
Tags: 2017,
All Funded Projects,
Completed,
Computational Tools and Services,
Software,
Deep learning is a computer analysis technique inspired by the human brain’s ability to learn. It involves several layers of artificial neural networks to learn and subsequently recognize patterns in data, forming the basis of many state-of-the-art applications from self-driving cars to drug discovery and cancer detection. Deep neural networks are capable of learning many levels of abstraction, and thus outperform many other types of automated classification algorithms. This project developed software tools, resources, and two training workshops that will allow USGS scientists to apply deep learning to remotely sensed imagery and to better understand natural hazards and habitats across the Nation. The tools and...
Categories: Project;
Tags: 2018,
All Funded Projects,
Completed,
Computational Tools and Services,
Data and Information Assets,
Droughts are becoming more frequent and severe and this trend is expected to continue in the coming century. Drought effects on natural resources include reduced water availability for plants and humans, as well as increased insect, disease, and vegetation mortality. Land managers need more information regarding how water availability may change and how drought will affect their sites in the future. We developed an online, interactive application that allows natural resource managers to access site-specific, observed historical and predicted future water availability. Users are able to set information that affects water balance, including soil texture and vegetation composition. With these inputs, as well as site-specific...
Categories: Project;
Tags: 2018,
All Funded Projects,
Completed,
Computational Tools and Services,
Data and Information Assets,
Insect pests cost billions of dollars per year globally, negatively impacting food crops and infrastructure and contributing to the spread of disease. Timely information regarding developmental stages of pests can facilitate early detection and control, increasing efficiency and effectiveness. To address this need, the USA National Phenology Network (USA-NPN) created a suite of “Pheno Forecast” map products relevant to science and management. Pheno Forecasts indicate, for a specified day, the status of the insect’s target life cycle stage in real time across the contiguous United States. These risk maps enhance decision-making and short-term planning by both natural resource managers and members of the public. ...
Categories: Project;
Tags: 2018,
All Funded Projects,
Completed,
Computational Tools and Services,
Data and Information Assets,
ScienceCache was originally developed as a mobile device data collection application for a citizen science project. ScienceCache communicates with a centralized database that facilitates near real-time use of collected data that enhances efficiency of data collection in the field. We improved ScienceCache by creating a flexible, reliable platform that reduces effort required to set up a survey and manage incoming data. Now, ScienceCache can be easily adapted for citizen science projects as well as restricted to specific users for private internal research. We improved scEdit, a web application interface, to allow for creation of more-complex data collection forms and survey routes to support scientific studies....
Categories: Project;
Tags: 2017,
All Funded Projects,
Completed,
Computational Tools and Services,
Data Collection,
USGS data are one of the most valuable assets of the organization, and it is critical that we ensure our scientists and staff produce and manage data in such a way that at the completion of a project, the data continues to be accessible in useable formats, documented so it can be understood, and preserved properly for future uses. Principal Investigator : Vivian B Hutchison Cooperator/Partner : Lisa Zolly, Michelle Y Chang, Heather S Henkel, Thomas E Burley, Chatfield Thomas A, Carly Strasser The goals of this project included: produce three online training modules that relay the importance of data management, best practices for planning, and guidance for preparing science data to share; target audiences of...
2012 Updates (from the FY12 Annual Review) The NWIS Web Services Snapshot represents the next generation of data retrieval and management. The newest Snapshot tool allows instant access to NWIS data from four different web services through ArcGIS, software available to all USGS scientists in all mission areas. Increased data retrieval efficiency reduces the steps required to retrieve and compile water data from multiple sites from what can be more than 30 steps to just a few clicks. As an end-user education tool, it promotes use of NWIS data from both web services and the NWIS database, which increases the production of scientific research and analysis that uses NWIS data. The Snapshot database design enables efficient...
This project described production of an information foundation for fish habitat research consisting of a “mashup” of data from multiple USGS data systems that are fragmented among the former USGS Divisions. The proposal aimed to develop and test the semantic approach to data integration by focusing on the problem of fish habitat modeling. Effective prediction of the abundance of particular species at particular locations is a primary objective of both ecology and natural resource management. Better knowledge of aquatic fish ecology and habitat requirements and improved tools for assessment and planning are needed to help conserve and rehabilitate populations throughout their native range. Principal Investigator...
Autonomous Underwater Vehicles (AUVs) are instruments that collect water-quality, depth, and other data in waterbodies. They produce complex and massive datasets. There is currently no standard method to store, organize, process, quality-check, analyze, or visualize this data. The Waterbody Rapid Assessment Tool (WaterRAT) is aPython application that processes and displays water-quality data with interactive two-dimensional and three-dimensional figures, but it runs offline with few capabilities and for just one study site. This project will transition WaterRAT to an online application that the public can easily use to view all AUV data. A database of all AUV datasets will be developed to improve accessibility,...
Categories: Project;
Tags: 2020,
All Funded Projects,
Completed,
Computational Tools and Services,
Data and Information Assets,
Advances in information technology now provide large volume, high-frequency data collection which may improve real-time biosurveillance and forecasting. But, big data streams present challenges for data management and timely analysis. As a first step in creating a data science pipeline for translating large datasets into meaningful interpretations, we created a cloud-hosted PostgreSQL database that collates climate data served from PRISM (https://climatedataguide.ucar.edu/climate-data) and water-quality data from the National Water Quality Portal (https://www.waterqualitydata.us/) and NWIS (https://waterdata.usgs.gov/nwis; fig 1). Using Python-based code, these data streams are queried and updated every 24 hours,...
Categories: Project;
Tags: 2019,
All Funded Projects,
Computational Tools and Services,
Data and Information Assets,
Software
The U.S. network of 160 weather radars known as NEXRAD (NEXt generation RADar) is one of the largest and most comprehensive terrestrial sensor networks in the world. To date, the National Climatic Data Center (NCDC) has archived about 2 petabytes data from this system. Although designed for meteorological applications, these radars readily detect the movements of birds, bats, and insects. Many of these movements are continental in scope, spanning the entire range of the network. It is unclear whether biological or meteorological data comprise the bulk of the archive. Regardless, the biological portion is sufficiently large that it likely represents one of the largest biological data archives in the world, perhaps...
Categories: Data,
Project;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: 2014,
All Funded Projects,
Best Practices,
Completed,
Data Release,
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