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To improve our understanding of health and immune function in tortoises, we evaluated both standard blood diagnostic (body condition, hematologic, plasma biochemistry values, trace elements, plasma proteins, vitamin A levels) and gene transcription profiles in 21 adult tortoises (11 clinically abnormal; 10 clinically normal) from Clark County, NV, USA. Necropsy and histology evaluations from clinically abnormal tortoises revealed multiple physiological complications, with moderate to severe rhinitis or pneumonia being the primary cause of morbidity in all but one of the examined animals. Improved methods for health assessments are an important element of monitoring tortoise population recovery and can support the...
Categories: Data;
Tags: Clark County, Nevada,
Hidden Valley,
USGS Science Data Catalog (SDC),
biota,
health
The U.S. Geological Survey (USGS), working in cooperation with the U.S. Fish and Wildlife Service, installed a groundwater and vegetation monitoring network in a proposed wetland area east of the Rio Grande near Bernardo, New Mexico on the NM Boys and Girls Ranch, at a site now known as the Blue Heron Wildlife Preserve (BHWP). In September of 2016, baseline vegetation data were collected across the BHWP to assess vegetation changes with time in the proposed wetland area as it is established and maintained. A second round of vegetation surveys were conducted in August of 2018 for comparative purposes. The collection of this data will support conservation and management decisions.
(i) This dataset presents macroscopic and microscopic pathological findings and bacteriology of 178 tadpoles diagnosed with Severe Perkinsea Infections. (ii) Specimen were collected and submitted to the NWHC as part of mortality investigations and collection of specimen from apparently healthy populations as part of ongoing amphibian health monitoring. (iii) Necropsies and gross evaluation of carcasses were carried out under a dissecting microscope. (iv) Severe Perkinsea Infection was confirmed in each specimen by histological observation of pathological changes in tissues with presence of Perkinsea-like organisms in at least one organ, including brain, eyes, gastrointestinal tract, gills, heart, liver, lungs, kidney,...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: USGS Science Data Catalog (SDC),
Unites States of Ameica,
amphibian,
biota,
case definition,
These data were compiled to evaluate the reproductive ecology of Agassiz's desert tortoises (Gopherus agassizzi) in the Sonoran Desert of California using two populations within Joshua Tree National Park, including five reproductive seasons that spanned 20 years (1997-1999, 2015-2016). Compared to their conspecifics inhabiting the Mojave Desert, the reproductive ecology of G. agassizii in the Sonoran Desert is understudied. Climatic variation between the two deserts can affect reproductive ecology, including fecundity and clutch phenology. Mature female tortoises (straight-line carapace length ≥ 20 cm) outfitted with radiotransmitters were located and X-radiographed approximately every 10-14 days during the reproductive...
Categories: Data;
Tags: Agassiz's desert tortoise,
California,
Ecology,
Geography,
Gopherus agassizii,
Data are time series of substrate grain size, remotely sensed water column turbidity, and measures of abundance (e.g., density, percent cover) of the nearshore subtidal (3-17 m depth) benthic community (vegetation, invertebrates, and fish) collected before (2008-2011) and during dam removal (2012-2014).
We collected detailed spatial data on the density and size distribution of intertidal snails as part of a broader effort to understand food webs in California estuaries. The survey area was Carpinteria Salt Marsh, California USA, which comprises 9 Ha tidal channels, 2 Ha salt flats, 17 Ha upland habitat, 6 Ha tidal pans, 52 Ha vegetated marsh, 2 Ha tidal flats. Using nearly 4,000 transects in potential snail habitat, we mapped snails throughout the estuary. Specifically, we systematically placed transects at intervals stratified within targeted habitat types: channels, pans, or marsh (or planar habitat that was mixed marsh and pan). At a quarter of the quadrats, we also estimated snail size-frequency distributions....
Categories: Data;
Tags: California,
Carpinteria,
Carpinteria Salt Marsh Reserve,
Santa Barbara County,
USGS Science Data Catalog (SDC),
All plant species were identified down to finest taxa when possible. Each plant code used in the survey data is paired to a plant code on this species list which provides the full scientific name of each species, the plant family the species belongs to, the native or non-native status of species, and the life history of the plant. Plant nomenclature follows: Baldwin B.G., D.H. Goldman, D.J. Keil, R. Patterson, T.J. Rosatti, and D.H. Wilken, editors. 2012. The Jepson Manual: vascular plants of California. Second edition. University of California Press, Berkeley, USA.
Categories: Data;
Types: Citation;
Tags: Angeles National Forest,
Cleveland National Forest,
Los Padres National Forest,
San Bernardino National Forest,
chaparral,
The data set contains the results of experimental challenge of captive zebra finches with an American crow isolate of West Nile virus (WNV). Data include infectivity, mortality, viremia, oral shedding of virus, and serology for anti- WNV antibodies. Australian and Timor zebra finches were used in this study and both are useful as a laboratory model of an avian species with moderate susceptibility to WNV.
Categories: Data;
Types: Citation;
Tags: National Wildlife Health Center,
USGS Science Data Catalog (SDC),
West Nile virus,
immunoassay,
qRT-PCR,
wy_lvl7_coarsescale: Wyoming hierarchical cluster level 7 (coarse-scale) for Greater sage-grouse We developed a hierarchical clustering approach that identifies biologically relevant landscape units that can 1) be used as a long-term population monitoring framework, 2) be repeated across the Greater sage-grouse range, 3) be used to track the outcomes of local and regional populations by comparing population changes across scales, and 4) be used to inform where to best spatially target studies that identify the processes and mechanisms causing population trends to change among spatial scales. The spatial variability in the amount and quality of habitat resources can affect local population success and result in different...
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Centrocercus urophasianus,
Greater sage-grouse,
United States,
Wyoming,
adaptive management,
This dataset represents an archived record of annual California sea otter surveys from 1985-2014. Survey procedures involve counting animals during the "spring survey" -- generally beginning in late April or early May and usually ending in late May early June but may extend into early July, depending on weather conditions. Annual surveys are organized by survey year and within each year, three shapefiles are included: census summary of southern sea otter, extra limit counts of southern sea otter, and range extent of southern sea otter. The surveys, conducted cooperatively by scientists of the U.S. Geological Survey, California Department of Fish and Wildlife, U.S. Fish and Wildlife Service and Monterey Bay Aquarium...
Categories: Data;
Tags: California,
Central California Coastal,
Coast,
Southern California Coastal,
USGS Science Data Catalog (SDC),
These data were compiled during a laboratory experiment showing the turbidity response to increasing silt and clay concentration. The sediment used for the laboratory experiment was collected in the Grand Canyon study area, from the bank of the Little Colorado River, approximately 1 kilometer upstream from its confluence with the Colorado River. The sediment was passed through a 63 µm sieve to isolate the silt-and-clay-size fraction. The silt and clay was completely dried in an oven (at 105 degrees Celsius for 12 hours), weighed, mechanically disaggregated, and added in stages to a measured volume of water to calculate concentration. The sediment was kept in suspension with an electric stirrer and turbidity was...
The point data file ("Soda Fire Point and Pasture Data (2016).Point Data.csv") includes 2016 vegetative cover values of exotic annual grass and perennial grass measured within three different types of plots for 75 pastures in the Soda Fire, which burned in 2015: 6m² plot using a grid-point intercept photo software, SamplePoint (Booth et al. 2006), 1m² quadrat using an unguided rapid ocular estimate in the field, 531m² circular plot using an unguided rapid ocular estimate in the field. Smaller plots were nested within larger plots. The pasture data file ("Soda Fire Point and Pasture Data (2016).Pasture Data.csv") includes pasture level metrics of area, elevation, precipitation, slope, heatload, soils, and herbicide...
The NABat sampling frame is a grid-based finite-area frame spanning Canada, the United States, and Mexico consisting of N total number of 10- by 10-km (100-km2) grid cell sample units for the continental United States, Canada, and Alaska and 5- by 5-km (25km2) for Hawaii and Puerto Rico. This grain size is biologically appropriate given the scale of movement of most bat species, which routinely travel many kilometers each night between roosts and foraging areas and along foraging routes. A Generalized Random-Tessellation Stratified (GRTS) Survey Design draw was added to the sample units from the raw sampling grids (https://doi.org/10.5066/P9M00P17). This sampling design produces an ordered list of units such that...
Radio-collared wolves in the Superior National Forest that were killed by other wolves or probably killed by wolves between 1968 and 2014
Categories: Data;
Types: Citation;
Tags: Canis lupus,
Gray wolves,
Minnesota,
Theme_Keyword,
USGS Science Data Catalog (SDC),
These data describe the catch and biological data from 363 bottom-set gill-net lifts distributed throughout Lake Michigan (including main basin and Green Bay) between April and November in 1930–1932. Data collected from the R/V Fulmar were recorded in notebooks and are now archived at the U.S. Geological Survey’s Great Lakes Science Center. Each lift included 1–7 gangs of linen gill nets. Each gang comprised 3–5 panels each having a length of 155 m, a height of 1.5 m, and a (stretch-)mesh size of either 60, 64, 67, 70, or 76 mm. The digitization of the Fulmar data notebooks was started in the late 1990s and finished in this study.
This dataset is from a restoration field study conducted at seven sites distributed across the southern Colorado Plateau in northern Arizona as part of the RestoreNet dryland restoration field trial network. The data consist of post-experimental restoration treatment (2018-2019) plant density and height measurements along with site precipitation, temperature, and soils data. Plant data were collected through plot monitoring visits distributed throughout the first year following restoration treatments and seeding.
The data document the results of several microbe bioassays performed by the USGS on Phragmites australis plants, including those performed on mature leaves, seedlings, and dead leaf tissues exploration of the literature to find accounts of microbes associated with Phragmites worldwide. For the bioassays, we prepared 162 pure cultures isolated from Phragmites plants in North America along the east coast, Florida, the Gulf of Mexico, and the Great Lakes area, 125 of which were from a previous study, and 38 represent new collections. The DNA sequences used to identify the 37 new collections are included. Microbes were isolated from plants collected from 2015-2018. We performed assays using both North American plant...
Nocturnal visual encounter survey data conducted by 29 searchers over 17 transects obtained during a Brown Treesnake rapid response deployment to island of Saipan in 2016. Surveys took place in the vicinity of the Saipan airport and Dandan village (ca. 15.127°N, 145.735°E) from 06 January to 13 March 2016, 6–7 nights/week but with a break in surveying from 26 January through 21 February. During Brown Treesnake searches over 386.8 kilometers, we collected data on selected vertebrate taxa (lizards and small mammals, both potential snake prey) recorded from survey transects with similar vegetation structure (secondary forest dominated by the introduced leguminous tree Leucaena leucocephala; emergent trees were partially...
Categories: Data;
Tags: Emerald Tree Skink,
Green Anole,
Saipan,
USGS Science Data Catalog (SDC),
biota
These data were compiled for a manuscript in which 1) we develop a water temperature model for the major river segments and tributaries of the Colorado River basin, including the Colorado, Green, Yampa, White, and San Juan rivers; 2) we link modeled water temperature to fish population data to predict the probability native and nonnative species will be common in the future in a warming climate; and 3) assess the degree to which dams create thermal discontinuity in summer in river segments across the western US. Per goal #1, we developed a water temperature model using data spanning 1985-2015 that predicts water temperature every 1 mile (1.6-km) in rivers both now and in the future due to the potential influence...
This dataset provides spatial predictions of habitat suitability for Gopherus agassizii (Agassiz’s desert tortoise), Gopherus morafkai (Morafka’s desert tortoise) and a pooled-species model under current conditions (1950 – 2000 yr). The raster layers contained here accompany the manuscript Inman et al. 2019 and were used to evaluate subtle ecological niche differences between G. agassizii and G. morafkai, and identify local species-environment relationships. Spatial predictions of habitat suitability were created using MaxEnt version 3.4.0 (Phillips et al., 2006), a widely-used software for SDM in presence-background frameworks. Detailed methods are provided in Inman et al. 2019. Inman et al. 2019. Local niche...
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