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To improve our understanding of health and immune function in tortoises, we evaluated both standard blood diagnostic (body condition, hematologic, plasma biochemistry values, trace elements, plasma proteins, vitamin A levels) and gene transcription profiles in 21 adult tortoises (11 clinically abnormal; 10 clinically normal) from Clark County, NV, USA. Necropsy and histology evaluations from clinically abnormal tortoises revealed multiple physiological complications, with moderate to severe rhinitis or pneumonia being the primary cause of morbidity in all but one of the examined animals. Improved methods for health assessments are an important element of monitoring tortoise population recovery and can support the...
Categories: Data;
Tags: Clark County, Nevada,
Hidden Valley,
USGS Science Data Catalog (SDC),
biota,
health
This data release contains coastal wetland synthesis products for the geographic region from Jamaica Bay to western Great South Bay, located in southeastern New York State. Metrics for resiliency, including unvegetated to vegetated ratio (UVVR), marsh elevation, and mean tidal range, are calculated for smaller units delineated from a Digital Elevation Model, providing the spatial variability of physical factors that influence wetland health. Through scientific efforts initiated with the Hurricane Sandy Science Plan, the U.S. Geological Survey has been expanding national assessment of coastal change hazards and forecast products to coastal wetlands with the intent of providing Federal, State, and local managers with...
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Atlantic Ocean,
Environmental Health,
Hydrology,
Jamaica Bay,
LTER,
(i) This dataset presents macroscopic and microscopic pathological findings and bacteriology of 178 tadpoles diagnosed with Severe Perkinsea Infections. (ii) Specimen were collected and submitted to the NWHC as part of mortality investigations and collection of specimen from apparently healthy populations as part of ongoing amphibian health monitoring. (iii) Necropsies and gross evaluation of carcasses were carried out under a dissecting microscope. (iv) Severe Perkinsea Infection was confirmed in each specimen by histological observation of pathological changes in tissues with presence of Perkinsea-like organisms in at least one organ, including brain, eyes, gastrointestinal tract, gills, heart, liver, lungs, kidney,...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: USGS Science Data Catalog (SDC),
Unites States of Ameica,
amphibian,
biota,
case definition,
These data were compiled to evaluate the reproductive ecology of Agassiz's desert tortoises (Gopherus agassizzi) in the Sonoran Desert of California using two populations within Joshua Tree National Park, including five reproductive seasons that spanned 20 years (1997-1999, 2015-2016). Compared to their conspecifics inhabiting the Mojave Desert, the reproductive ecology of G. agassizii in the Sonoran Desert is understudied. Climatic variation between the two deserts can affect reproductive ecology, including fecundity and clutch phenology. Mature female tortoises (straight-line carapace length ≥ 20 cm) outfitted with radiotransmitters were located and X-radiographed approximately every 10-14 days during the reproductive...
Categories: Data;
Tags: Agassiz's desert tortoise,
California,
Ecology,
Geography,
Gopherus agassizii,
We collected detailed spatial data on the density and size distribution of intertidal snails as part of a broader effort to understand food webs in California estuaries. The survey area was Carpinteria Salt Marsh, California USA, which comprises 9 Ha tidal channels, 2 Ha salt flats, 17 Ha upland habitat, 6 Ha tidal pans, 52 Ha vegetated marsh, 2 Ha tidal flats. Using nearly 4,000 transects in potential snail habitat, we mapped snails throughout the estuary. Specifically, we systematically placed transects at intervals stratified within targeted habitat types: channels, pans, or marsh (or planar habitat that was mixed marsh and pan). At a quarter of the quadrats, we also estimated snail size-frequency distributions....
Categories: Data;
Tags: California,
Carpinteria,
Carpinteria Salt Marsh Reserve,
Santa Barbara County,
USGS Science Data Catalog (SDC),
The data set contains the results of experimental challenge of captive zebra finches with an American crow isolate of West Nile virus (WNV). Data include infectivity, mortality, viremia, oral shedding of virus, and serology for anti- WNV antibodies. Australian and Timor zebra finches were used in this study and both are useful as a laboratory model of an avian species with moderate susceptibility to WNV.
Categories: Data;
Types: Citation;
Tags: National Wildlife Health Center,
USGS Science Data Catalog (SDC),
West Nile virus,
immunoassay,
qRT-PCR,
This dataset represents an archived record of annual California sea otter surveys from 1985-2014. Survey procedures involve counting animals during the "spring survey" -- generally beginning in late April or early May and usually ending in late May early June but may extend into early July, depending on weather conditions. Annual surveys are organized by survey year and within each year, three shapefiles are included: census summary of southern sea otter, extra limit counts of southern sea otter, and range extent of southern sea otter. The surveys, conducted cooperatively by scientists of the U.S. Geological Survey, California Department of Fish and Wildlife, U.S. Fish and Wildlife Service and Monterey Bay Aquarium...
Categories: Data;
Tags: California,
Central California Coastal,
Coast,
Southern California Coastal,
USGS Science Data Catalog (SDC),
Data pertaining to mapping the approximate inland extent of saltwater at the base of the Biscayne Aquifer in the Model Land Area of Miami-Dade County, Florida in 2016. The inland extent of saltwater at the base of the Biscayne aquifer in the Model Land area of Miami-Dade County, Florida, was last mapped in 2011. Since that time, the saltwater interface has continued to move inland. The interface is near several active well fields; therefore, an updated approximation of the inland extent of saltwater and an improved understanding of the rate of movement of the saltwater interface are necessary. A geographic information system was used to create a map using the data collected by the organizations that monitor water...
Categories: Data;
Tags: Biscayne aquifer,
Florida,
Miami-Dade County,
Model Land area,
USGS Science Data Catalog (SDC),
This dataset consists of measurements of the digestive gland in the freshwater snail Lymnaea stagnalis orally exposed to uranium. The objective of the study was to assess the morphological effects of uranium on the snail digestive gland by light microscopy. Laboratory-cultured L stagnalis were exposed to either synthetic or natural solid phases of uranium and a subset (6 controls and 6 exposed) were euthanized and fixed in 10% neutral buffered formalin for histopathological assessment. Slides were processed and stained with hematoxalin and eosin as per standard procedure (Luna 1968). The size of each sample, the length and width of digestive gland tubules (5 random glands per sample) and height of digestive cells...
Categories: Data;
Tags: Environmental Health,
Lymnaea stagnalis,
Madison, Wisconsin,
USGS Science Data Catalog (SDC),
Wildlife Biology,
The point data file ("Soda Fire Point and Pasture Data (2016).Point Data.csv") includes 2016 vegetative cover values of exotic annual grass and perennial grass measured within three different types of plots for 75 pastures in the Soda Fire, which burned in 2015: 6m² plot using a grid-point intercept photo software, SamplePoint (Booth et al. 2006), 1m² quadrat using an unguided rapid ocular estimate in the field, 531m² circular plot using an unguided rapid ocular estimate in the field. Smaller plots were nested within larger plots. The pasture data file ("Soda Fire Point and Pasture Data (2016).Pasture Data.csv") includes pasture level metrics of area, elevation, precipitation, slope, heatload, soils, and herbicide...
Located in the northern tropical Pacific Ocean, Majuro is the capital of the Republic of the Marshall Islands. Majuro Atoll consists of a large, narrow landmass and a set of smaller perimeter islands surrounding a lagoon that is over 100 square miles in size. The waters surrounding the Majuro Atoll land areas are relatively shallow with poorly mapped bathymetry. However, the Pacific Ocean on the exterior of the coral atoll and the lagoon within its interior consist of deep bathymetry with steep slopes. The highest elevation of the Majuro Atoll is estimated at only 3-meters above sea level, which is the island community of Laura located on the western part of the atoll. At the eastern edge of the atoll lies the capital...
Categories: Data;
Tags: 3D Elevation Program,
3DEP,
American Society of Photogrammetry and Remote Sensing,
Base Maps,
Bathymetric,
The U.S. Geological Survey collected topographic data in cooperation with the U.S. Army Corps of Engineers to assist in the management of two recreation areas at Blue Mountain Lake and near Nimrod Lake in Arkansas. Data were collected March 3-4, 2020 using terrestrial light detection and ranging (T-lidar) surveying equipment, Global navigation Satellite System (GNSS) surveying equipment, and conventional surveying techniques. The surveyed locations had a parking area, boat ramp, and some small recreational structures. Each site was surveyed using a FARO 3D tripod-mounted T-lidar unit. Additionally, a topographic survey was conducted in order to georeference the lidar survey. These topographic data were collected...
Polygon locations of fire perimeters in the Sky Island mountain ranges in the Madrean Archipelago Ecoregion of the southwestern United States and northern Mexico. These fires occurred from 1985 to 2011 and were mapped using Landsat satellite imagery.
Switchgrass (Panicum virgatum L.), a highly productive perennial grass, has been recommended as one potential source for cellulosic biofuel feedstocks. Previous studies indicate that planting perennial grasses (e.g., switchgrass) in high topographic relief cropland waterway buffers can improve local environmental conditions and sustainability. The main advantages of this land management practice include (1) reducing soil erosion and improving water quality because switchgrass requires less tillage, fertilizers, and pesticides; and (2) improving regional ecosystem services (e.g., improving water infiltration, minimizing drought and flood impacts on production, and serving as carbon sinks). In this study, we mapped...
Water-surface elevation measurements were collected in Spring, 2015 along the upper Willamette River, Oregon, between Harrisburg and Corvallis. These surveys were collected over a small range of discharges, from 6,900 cubic feet per second to 8,300 cubic feet per second, using a real-time kinematic global positioning system (RTK-GPS) on a motorboat at various cross sections along the river. These datasets were collected for equipment calibration and validation for the National Aeronautics and Space Administration’s (NASA) Surface Water and Ocean Topography (SWOT) satellite mission. This is one of multiple survey datasets that will be released for this effort.
Water-surface elevations were recorded by submerged pressure transducers in Spring, 2015 along the upper Willamette River, Oregon, between Eugene and Corvallis. The water-surface elevations were surveyed by using a real-time kinematic global positioning system (RTK-GPS) at each pressure sensor location. These water-surface elevations were logged over a small range of discharges, from 4,600 cubic feet per second to 10,800 cubic feet per second at Harrisburg, OR. These datasets were collected for equipment calibration and validation for the National Aeronautics and Space Administration’s (NASA) Surface Water and Ocean Topography (SWOT) satellite mission. This is one of multiple datasets that will be released for this...
This U.S. Geological Survey (USGS) Data Release contains tree-core, soil-gas, and soil data collected at the Vienna Wells Superfund site in Vienna, Missouri by the U.S. Geological Survey between 2011 and 2016. Concentrations of tetrachloroethylene (PCE) are reported for each sample in each medium. Tree-core sampling was conducted over two days (July 29, 2014 and May 21, 2015). Trees sampled on July 29, 2014 were used to calculate concentration centroids for each tree to compare with concentration centroids in soil samples. Tree 29 was sampled on May 21, 2015 to characterize and model tetrachloroethylene concentrations within a single tree. An interpolated soil surface was created from 1,016 soil samples (see doi:...
We report the site number and locations of 5798 streamflow gages displaying zero flow for at least one day in their daily records. 4891 of these gages are from the GRDC network, and 906 are USGS gages in the contiguous US. Additionally, provisional data for two USGS gages 1) Rio Puerco near Bernardo, NM (USGS site: 08353000) and 2) Agua Fria River Near Mayer, AZ (USGS site: 09512500) are provided to illustrate zero flow record behaviors.
Categories: Data;
Tags: Global, United States,
Hydrology,
Intermittent streams,
USGS Science Data Catalog (SDC),
Water Resources,
This dataset summarizes various sedimentary data from ten U.S. Geological Survey (USGS) surface water sites across the contiguous United States. These sites include: 01648010 Rock Creek at Joyce Road, Washington, DC 05586300 Illinois River at Florence, Illinois 06731000 Cherry Creek below Cherry Creek Lake, Colorado 06807000 Missouri River at Nebraska City, Nebraska 06935965 Missouri River at St. Charles, Missouri 08374550 Rio Grande near Castolon, Texas 08375300 Rio Grande at Rio Grande Village, Big Bend National Park, Texas 09404200 Colorado River above Diamond Creek near Peach Springs, Arizona 11447650 Sacramento River at Freeport, California 12046260 Elwha River at diversion near Port Angeles, Washington The...
These data describe the catch and biological data from 363 bottom-set gill-net lifts distributed throughout Lake Michigan (including main basin and Green Bay) between April and November in 1930–1932. Data collected from the R/V Fulmar were recorded in notebooks and are now archived at the U.S. Geological Survey’s Great Lakes Science Center. Each lift included 1–7 gangs of linen gill nets. Each gang comprised 3–5 panels each having a length of 155 m, a height of 1.5 m, and a (stretch-)mesh size of either 60, 64, 67, 70, or 76 mm. The digitization of the Fulmar data notebooks was started in the late 1990s and finished in this study.
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