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Background Deoxyribonucleic acid (DNA) is the hereditary material in organisms that contains the biological instructions for building and maintaining them. The chemical structure of DNA is the same for all organisms, but differences exist in the order of the DNA building blocks, known as base pairs. Unique sequences provide a means to identify individual species and detect their presence within aquatic or terrestrial environments. Environmental DNA (eDNA) is nuclear or mitochondrial DNA that is shed from an organism into the environment. Sources of eDNA include feces, mucous, and gametes; shed skin; and carcasses. In aquatic environments, eDNA is diluted and distributed by currents and other hydrological processes....
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Background The invasive diatom Didymosphenia geminata (didymo) has historically been a wide-spread, but rare, micro algae found in moderately flowing cold-water streams of North America, Europe, Asia, and (more recently) New Zealand. Demographic patterns of didymo have recently changed resulting in greater spatial coverage and temporal persistence (e.g. blooms) in streams worldwide. Didymo blooms can form dense “woven fabric” aggregate up to 20 cm think, that trap algae, macroinvertebrates, detritus and other debris. The recent discovery of didymo in parts of New York State, including the Upper Esopus Creek in 2009, is concerning because blooms can affect benthic habitat, river hydraulics, the structure and function...
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Background Past water-quality issues in the St. Lawrence River at Massena, NY resulted in a determination that selected beneficial uses were impaired in a surrounding Area of Concern (AOC) and on the Canadian side of the international boundary (Cornwall, Ontario). The benthic macroinvertebrate community or “benthos” Beneficial Use Impairment (BUI) was designated degraded because impairment metrics were unavailable or inconclusive. Recent sampling efforts by New York State Department of Environmental Conservation (NYSDEC) as part of their Rotating Integrated Basin Studies (RIBS) program indicate that macroinvertebrate communities in some sections of the St. Lawrence River and its tributaries in the Massena AOC are...
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Background : Contaminated bed sediments in much of the Buffalo River AOC (Figure 1A, 1B) were removed (dredged) between 2011 and 2015. Plans to monitor and assess the effectiveness of this management action on 8 of 9 beneficial-use-impairments (BUI), included the benthic macroinvertebrate (benthos) BUI, were revised by the Buffalo Niagara Riverkeeper (Riverkeeper, 2014). Funds needed to implement various monitoring efforts proposed in this plan, however, were not available at that time. The USGS-New York Water Science Center (NYWSC) and the NYSDEC propose a collaborative study to evaluate multiple lines of evidence (toxicity of sediments and the condition of benthic macroinvertebrate communities) to determine...
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Background The Esopus Creek is located in the Catskill Mountains of New York State and is part of the New York City (NYC) drinking water supply system. The basin was dammed in 1915 to form the Ashokan Reservoir splitting the creek into Upper (upstream of the reservoir) and Lower segments. The drainage area of Upper Esopus Creek, between the source (Winisook Lake) and the Ashokan Reservoir is approximately 192 mi2. The Schoharie Reservoir, located 27 miles north of the Ashokan Reservoir, also supplies water to Upper Esopus Creek (and to the Ashokan Reservoir) via the Shandaken tunnel. Waters from the Schoharie watershed enter Upper Esopus Creek at the Shandaken portal and travel 18 km before entering the Ashokan...
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Background Past water-quality issues in the St. Lawrence River at Massena, NY resulted in a determination that selected beneficial uses may be impaired in a surrounding Area of Concern (AOC) and on the Canadian side of the international boundary (Cornwall, Ontario). The plankton (phytoplankton zooplankton) Beneficial Use Impairment (BUI) was so designated because impairment metrics were unavailable or inconclusive. Recent investigations, however, suggest that plankton communities are relatively healthy and no longer threaten the local ecosystem. Thus, the BUI for plankton may now be outdated in all, or parts of, the St. Lawrence River in the Massena AOC. The primary goal for the Massena (and Cornwall) Remedial Action...
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Background: The USGS propose a collaborative investigation with the NYSDEC and NOAA to evaluate the current condition of benthic macroinvertebrate communities and toxicity of bed sediments in the Niagara River Area of Concern (AOC). Using a probabilistic study design, sediment-toxicity data compiled by the USGS, invertebrate community data collected by NYSDEC, and sediment-chemistry data collected by NOAA will be assimilated using a Sediment Quality Triad approach (Chapman et al., 1992; USEPA, 1992) to provide a sediment-quality baseline needed to gauge changes expected to follow remediation of contaminated sediments in parts of the AOC. These data will also be used directly to confirm that the macroinvertebrate...
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Background With few exceptions, the contemporary and past effects of acidification on fish populations and communities in streams across acid-sensitive regions of NY have not been documented. The pervasive lack of information only permits anecdotal insight into the spatial effects of acidification on stream-fish assemblages and essentially precludes any broad effort to quantify temporal trends and potential recovery of fish assemblages in less acidic or less toxic streams. Though the effects of acidification on fish assemblages have been qualified in several streams of the eastern Adirondacks during 1979, the 1980s, and early 2000s, (Schofield and Driscoll 1987; Simonin et al. 2005) quantitative impacts were...
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Background - Turbid waters originating in the Schoharie Reservoir allegedly impair habitat and resident trout populations in Upper Esopus Creek; however, to date no scientific studies have documented adverse affects of altered thermal, suspended sediment (turbidity), and flow regimes on survival, growth, or behavior of trout or the health of their populations. The 424 mi2 Esopus Creek watershed is a tributary to the Hudson River in the south-central Catskill Mountains of New York State and is often considered to be two systems separated by the Ashokan Reservoir. The Upper Esopus Creek is considered the reach between its source, Winisook Lake, and the reservoir. Flows in the Upper Esopus Creek are supplemented by...
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Problem - The New York City Department of Environmental Protection (NYCDEP) Stream Management Program, in cooperation with local Soil and Water Conservation Districts, is implementing stream-restoration demonstration projects to decrease channel bed and bank erosion and improve water quality (lower suspended sediment and turbidity) in several priority streams of the Catskill Mountain Region (Fig. 1). A variety of issues relating to (a) the hydraulic geometry of stable and unstable stream channels, (b) validation of underlying assumptions used to characterize channel stability and design, and (c) the effects of restoration on stream-channel geomorphology, stability, biota, and sediment transport have not been...
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American Eel (Anguilla Rostrata) Background The U.S. Geological Survey (USGS) has worked in cooperation with The Nature Conservancy (TNC) over the past 11 years to study the effects of channel geomorphology and impoundments on the distribution of common and rare mussels in the Neversink River and to characterize fish assemblages in tributaries to the Upper Delaware River in New York, Pennsylvania, and New Jersey. The focus of this research and monitoring program has recently shifted toward studies of the rapidly declining American eel (Anguilla rostrata) populations in rivers of the tri-state region. There are many factors that could potentially cause the observed declines in local and continental populations of...
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Project Summary. The Western Adirondack Stream Survey (WASS), conducted in 2003-2005, showed that acidic deposition was causing toxic forms of Al to move from soils to streams in 66% of the 565 watersheds assessed in the study region. The WASS encompassed only 20% of the Adirondack region, and for the remaining 80% (referred to hereafter as the East-Central Adirondack region), there is little information on the extent of soil and stream acidification. Based on lake-chemistry data, acidification in the East-Central Adirondack region has been considered minimal relative to the Western Adirondack region. However, some lake acidification has been identified, and WASS results showed that lake acidification under...
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Background: The USGS propose a collaborative investigation with the NYSDEC to evaluate the current condition of benthic macroinvertebrate communities and toxicity of bed sediments in the Eighteenmile Creek Area of Concern (AOC). Sediment-toxicity data provided by the USGS and benthic-community data provided by the NYSDEC from inside the AOC will be compared to similar data from non-AOC sites in Eighteenmile Creek or nearby reference streams (of comparable drainage areas) to determine if the benthos-BUI (Beneficial-Use Impairment) designation is appropriate or if the BUI could be removed in Eighteenmile Creek. The remainder of this pre-proposal addresses only the direct USGS (sediment toxicity assessment) contribution...
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Problem The mainstem of the Mohawk River extends from Lake Delta Dam near Rome, NY downstream to its confluence with the Hudson River near Cohoes, NY. It supports a diverse fishery that is used extensively by recreational anglers. Smallmouth bass (Micropterus dolomieu) and walleye (Sander vitreus) are among the most popular game species with anglers but past biological surveys have documented at least 56 fish species that inhabit the river. An extensive fish survey of the Lower Mohawk River was last conducted by the New York State Department of Environmental Conservation (NYSDEC) from 1979-1983. Some key findings of this research include: • the river supported an abundant and fast growing smallmouth bass...
    map background search result map search result map Geomorphology, Biology, & Stability of Catskill Mountain Streams, New York Assessing American Eel Populations in Tributaries to the Upper Delaware River Estimating chronic toxicity of waters from the St. Lawrence River at Massena Area-of-Concern using two plankton species Sediment toxicity and status of benthic invertebrate communities in the St. Lawrence River and its tributaries within the Massena Area-of-Concern Spatiotemporal trends in fish assemblages of the Mohawk River Didymosphenia geminata in the Upper Esopus Creek: Seasonal changes in density and distribution, controlling environmental factors, and potential ecosystem impacts Use of telemetry to assess potential effects of Schoharie Reservoir waters on trout populations in the Upper Esopus Creek Assessing Spatiotemporal Patterns in Fish Assemblages from Acid-Sensitive Streams in the Adirondack and Catskill Mountains Quantitative Assessment of Water Quality in Upper Esopus Creek: Fish, Macroinvertebrates, Periphyton, Turbidity, and Nutrients Emerging Methods for Detection and their Potential for Inventorying Brook Trout Populations in Streams of the Western Adirondacks Status of benthic macroinvertebrate communities and toxicity of sediments in the Niagara River Area of Concern, New York Status of benthic macroinvertebrate communities and toxicity of sediments in the Eighteenmile Creek Area of Concern, New York Assessment of Acidic Deposition Effects on the Chemistry and Benthos of Streams of the East-Central Adirondack Region Sediment toxicity and status of benthic macroinvertebrate communities in the remediated Buffalo River Area-of-Concern Sediment toxicity and status of benthic macroinvertebrate communities in the remediated Buffalo River Area-of-Concern Estimating chronic toxicity of waters from the St. Lawrence River at Massena Area-of-Concern using two plankton species Sediment toxicity and status of benthic invertebrate communities in the St. Lawrence River and its tributaries within the Massena Area-of-Concern Status of benthic macroinvertebrate communities and toxicity of sediments in the Eighteenmile Creek Area of Concern, New York Didymosphenia geminata in the Upper Esopus Creek: Seasonal changes in density and distribution, controlling environmental factors, and potential ecosystem impacts Use of telemetry to assess potential effects of Schoharie Reservoir waters on trout populations in the Upper Esopus Creek Quantitative Assessment of Water Quality in Upper Esopus Creek: Fish, Macroinvertebrates, Periphyton, Turbidity, and Nutrients Status of benthic macroinvertebrate communities and toxicity of sediments in the Niagara River Area of Concern, New York Emerging Methods for Detection and their Potential for Inventorying Brook Trout Populations in Streams of the Western Adirondacks Assessing American Eel Populations in Tributaries to the Upper Delaware River Assessing Spatiotemporal Patterns in Fish Assemblages from Acid-Sensitive Streams in the Adirondack and Catskill Mountains Geomorphology, Biology, & Stability of Catskill Mountain Streams, New York Spatiotemporal trends in fish assemblages of the Mohawk River Assessment of Acidic Deposition Effects on the Chemistry and Benthos of Streams of the East-Central Adirondack Region