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Background Deoxyribonucleic acid (DNA) is the hereditary material in organisms that contains the biological instructions for building and maintaining them. The chemical structure of DNA is the same for all organisms, but differences exist in the order of the DNA building blocks, known as base pairs. Unique sequences provide a means to identify individual species and detect their presence within aquatic or terrestrial environments. Environmental DNA (eDNA) is nuclear or mitochondrial DNA that is shed from an organism into the environment. Sources of eDNA include feces, mucous, and gametes; shed skin; and carcasses. In aquatic environments, eDNA is diluted and distributed by currents and other hydrological processes....
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Background: The waters of the Mohawk River and its tributaries are inhabited by some of the most diverse fish communities in the Northeast. The construction of the Erie Canal in 1825, and later the Barge Canal in 1918, enabled the westward expansion of fishes from the Hudson River drainage as well as the eastward expansion of fishes indigenous to the Great Lakes drainage. Today, almost half of the fish species in the Mohawk River are nonnative (Carlson and Daniels, 2004) and George et al (2016), yet the fish community still fulfills many important economic and ecological functions. The Round Goby (Neogobius melanostomus) is an invasive benthic fish indigenous to Ponto-Caspian region of Eurasia that is invading eastward...
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Background Heavy metals, phosphorus, and organic contaminants in water and sediments of the lower Genesee River, resulted in the designation of fourteen beneficial uses as impaired in the Rochester Embayment Area of Concern (AOC). The benthic macroinvertebrate community or “benthos” Beneficial Use Impairment (BUI) was designated as degraded in the Genesee River because the New York State Department of Environmental Conservation (NYSDEC) impairment metrics generally identified slight to moderate impacts through the 1990s and 2000s. Accumulation of “sediments on more suitable substrates” and “contaminants in sediment of the Genesee River related to past municipal and industrial waste-water treatment plant discharges...
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Background Past water-quality issues in the St. Lawrence River at Massena, NY resulted in a determination that selected beneficial uses were impaired in a surrounding Area of Concern (AOC) and on the Canadian side of the international boundary (Cornwall, Ontario). The benthic macroinvertebrate community or “benthos” Beneficial Use Impairment (BUI) was designated degraded because impairment metrics were unavailable or inconclusive. Recent sampling efforts by New York State Department of Environmental Conservation (NYSDEC) as part of their Rotating Integrated Basin Studies (RIBS) program indicate that macroinvertebrate communities in some sections of the St. Lawrence River and its tributaries in the Massena AOC are...
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Background The Esopus Creek is located in the Catskill Mountains of New York State and is part of the New York City (NYC) drinking water supply system. The basin was dammed in 1915 to form the Ashokan Reservoir splitting the creek into Upper (upstream of the reservoir) and Lower segments. The drainage area of Upper Esopus Creek, between the source (Winisook Lake) and the Ashokan Reservoir is approximately 192 mi2. The Schoharie Reservoir, located 27 miles north of the Ashokan Reservoir, also supplies water to Upper Esopus Creek (and to the Ashokan Reservoir) via the Shandaken tunnel. Waters from the Schoharie watershed enter Upper Esopus Creek at the Shandaken portal and travel 18 km before entering the Ashokan...
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Background Acidification of lotic and lentic environments has been found to adversely affect the integrity of resident biological assemblages. These effects have been particularly severe in poorly buffered regions like the Western Adirondacks. Although the Clean Air Act and its amendments have greatly reduced levels of atmospheric deposition, many streams in this region are still chronically or episodically acidified. In-stream and watershed-wide liming are two directed-mitigation techniques which could be used to accelerate ecosystem recovery and help restore the condition of biological assemblages. The costs and abilities (as well as effective duration) of these techniques to improve water and soil chemistry,...
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Background With few exceptions, the contemporary and past effects of acidification on fish populations and communities in streams across acid-sensitive regions of NY have not been documented. The pervasive lack of information only permits anecdotal insight into the spatial effects of acidification on stream-fish assemblages and essentially precludes any broad effort to quantify temporal trends and potential recovery of fish assemblages in less acidic or less toxic streams. Though the effects of acidification on fish assemblages have been qualified in several streams of the eastern Adirondacks during 1979, the 1980s, and early 2000s, (Schofield and Driscoll 1987; Simonin et al. 2005) quantitative impacts were...
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Background The New York State Department of Environmental Conservation (NYSDEC) and Adirondack Lakes Survey Corporation (ALSC) repeatedly surveyed fish assemblages and characterized water chemistry from 44 to 52 lakes during the periods 1984-1987 and 1994-2005, and 2008-2012 to document the regional effects of acidic deposition and potential recovery associated with the 1990 Clean Air Act Amendment (CAAA) under the Adirondack Long-Term Monitoring (ATLM) Project. An initial analysis of changes in fish assemblages between the periods 1984-1987 and 1994-2005 noted modest and mixed recoveries, identified five fish-community response/recovery classes, and helped to devise a fish-community index based on species acid...
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Background Forested watersheds in the southwestern Adirondack Mountains of New York received some of the most acidic deposition in North America from the 1970s through much of the 1990s (NADP 2005). Thus it is not surprising that associated effects on surface-water quality and ecosystems in lakes and streams of the southwestern Adirondack Mountains of New York were investigated to various extents over the past 35 years; first to document acidification effects and then to evaluate potential recovery. In fact, evidence of adverse impacts on water quality and aquatic ecosystems across the region provided much support for implementation of the Clean Air Act (CAA) of 1990. Although the underlying effect mechanisms were...
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Background Although New York State has more than 70,000 miles of streams and rivers, little is known about the status, distribution, and trends of mercury (Hg) levels in stream fish, or the environmental drivers of these patterns. Streams and their riparian zones provide critical habitat for fish, birds, mammals, reptiles and amphibians, and serve as the interface between aquatic and terrestrial Hg transfer, transformations (most notably methylation) and bioaccumulation. Importantly, monitoring data from lakes (e.g., Simonin et al. 2006) does not transfer reliably to streams because of fundamental differences in Hg cycling and bioaccumulation processes. An assessment of fish Hg bioaccumulation focused on New...
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Purpose and Scope The Natural Resources Department of the Bad River Band of Lake Superior Chippewa, Odanah, Wisconsin has requested assistance with compiling existing mercury (Hg) concentration data from measurements in a variety of environmental media in an effort to evaluate risks to ecosystem and human health and to identify key data gaps that could be addressed through future sampling. These data include Hg concentrations in fish, frogs, otters, birds, wild rice, the atmosphere, surface water, and sediment. The purpose of this proposed study is to compile existing Hg data collected by the Bad River Band of Lake Superior Chippewa, evaluate the potential risks to humans and to local ecosystems, and to recommend...
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The lakes, rivers, and streams of New York State provide an essential water resource for the State. The information provided by time series hydrologic data is essential to understanding ways to promote healthy instream ecology and to strengthen the scientific basis for sound water management decision making in New York. The U.S. Geological Survey, in cooperation with The Nature Conservancy and the New York State Energy Research and Development Authority, has developed the New York Streamflow Estimation Tool to estimate a daily mean hydrograph for the period from October 1, 1960, to September 30, 2010, at ungaged locations across the State. The New York Streamflow Estimation Tool produces a complete estimated daily...
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Problem The mainstem of the Mohawk River extends from Lake Delta Dam near Rome, NY downstream to its confluence with the Hudson River near Cohoes, NY. It supports a diverse fishery that is used extensively by recreational anglers. Smallmouth bass (Micropterus dolomieu) and walleye (Sander vitreus) are among the most popular game species with anglers but past biological surveys have documented at least 56 fish species that inhabit the river. An extensive fish survey of the Lower Mohawk River was last conducted by the New York State Department of Environmental Conservation (NYSDEC) from 1979-1983. Some key findings of this research include: • the river supported an abundant and fast growing smallmouth bass...
    map background search result map search result map Response of Fish Assemblages to Changing Acid-base Chemistry in Adirondack Long Term Monitoring Lakes, 1984-2012 Sediment toxicity and status of benthic invertebrate communities in the St. Lawrence River and its tributaries within the Massena Area-of-Concern Sediment Toxicity and Condition of Benthic Invertebrate Communities in the Rochester Embayment Area-of-Concern Spatiotemporal trends in fish assemblages of the Mohawk River Assessing Spatiotemporal Patterns in Fish Assemblages from Acid-Sensitive Streams in the Adirondack and Catskill Mountains Quantitative Assessment of Water Quality in Upper Esopus Creek: Fish, Macroinvertebrates, Periphyton, Turbidity, and Nutrients Emerging Methods for Detection and their Potential for Inventorying Brook Trout Populations in Streams of the Western Adirondacks Long-term Effects of the Clean Air Act on Water Toxicity and Brook Trout Survival in Acidified Streams of the Southwestern Adirondacks, 1984-2017 Effects of Watershed and In-stream Liming on Accelerated Recovery of Macroinvertebrate Assemblages in Tributaries to Honnedaga Lake Mercury Bioaccumulation in Fish in New York's Streams and Rivers A New Tool for Estimating Daily Mean Streamflow Statistics at Rural Streams in New York State, excluding Long Island Monitoring the Status and Expansion of Round Goby Populations in the Mohawk River/Barge Canal System Compilation of Mercury Data and Associated Risk to Human and Ecosystem Health, Bad River Band of Lake Superior Chippewa Effects of Watershed and In-stream Liming on Accelerated Recovery of Macroinvertebrate Assemblages in Tributaries to Honnedaga Lake Sediment toxicity and status of benthic invertebrate communities in the St. Lawrence River and its tributaries within the Massena Area-of-Concern Sediment Toxicity and Condition of Benthic Invertebrate Communities in the Rochester Embayment Area-of-Concern Quantitative Assessment of Water Quality in Upper Esopus Creek: Fish, Macroinvertebrates, Periphyton, Turbidity, and Nutrients Compilation of Mercury Data and Associated Risk to Human and Ecosystem Health, Bad River Band of Lake Superior Chippewa Emerging Methods for Detection and their Potential for Inventorying Brook Trout Populations in Streams of the Western Adirondacks Long-term Effects of the Clean Air Act on Water Toxicity and Brook Trout Survival in Acidified Streams of the Southwestern Adirondacks, 1984-2017 Assessing Spatiotemporal Patterns in Fish Assemblages from Acid-Sensitive Streams in the Adirondack and Catskill Mountains Spatiotemporal trends in fish assemblages of the Mohawk River Monitoring the Status and Expansion of Round Goby Populations in the Mohawk River/Barge Canal System Response of Fish Assemblages to Changing Acid-base Chemistry in Adirondack Long Term Monitoring Lakes, 1984-2012 A New Tool for Estimating Daily Mean Streamflow Statistics at Rural Streams in New York State, excluding Long Island Mercury Bioaccumulation in Fish in New York's Streams and Rivers