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This data release is provided in support of Arismendi, I., Dunham, J.B., Heck, M.P., Schultz, L.D., Hockman-Wert, D.P., 2017, A statistical method to predict flow permanence in dryland streams from time series of stream temperature: Water, v. 9, no. 12, p. 946, https://doi.org/10.3390/w9120946. This code release contains all of the source code from the "Hidden Markov Model" sections of the associated manuscript. The source code was written using the R programming language (www.r-project.org, version 3.3.1). Running the code requires knowlege of the R programming language. The code snippet requires the folder location containing the data, and the site being processed, to be updated. The code requires certain R packages,...
These data represent the extent of urbanization (for the year indicated) predicted by the model SLEUTH, developed by Dr. Keith C. Clarke, at the University of California, Santa Barbara, Department of Geography and modified by David I. Donato of the United States Geological Survey (USGS) Eastern Geographic Science Center (EGSC). Further model modification and implementation was performed at the Biodiversity and Spatial Information Center at North Carolina State University
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Locating meadow study sitesMeadow centers as recorded in the ‘Copy of sitecords_areaelev from Caruthers thesis.xls’ file delivered by Debinski in November 2012 were matched to polygons as recorded in files ‘teton97map_area.shp’ and ‘gallatin97map_area.shp’ both also delivered by Debinski in November 2012.In cases where the meadow center did not fall within a meadow polygon, if there was a meadow polygon of the same meadow TYPE nearby (judgment was used here), the meadow center was matched with the meadow polygon of same meadow TYPE. In total, 29 of 30 Gallatin meadow sites and 21 of 25 Teton meadow sites were positively located.Identifying meadow pixels for analysisThe native MODIS 250-meter grid was reprojected...
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Locating meadow study sitesMeadow centers as recorded in the ‘Copy of sitecords_areaelev from Caruthers thesis.xls’ file delivered by Debinski in November 2012 were matched to polygons as recorded in files ‘teton97map_area.shp’ and ‘gallatin97map_area.shp’ both also delivered by Debinski in November 2012.In cases where the meadow center did not fall within a meadow polygon, if there was a meadow polygon of the same meadow TYPE nearby (judgment was used here), the meadow center was matched with the meadow polygon of same meadow TYPE. In total, 29 of 30 Gallatin meadow sites and 21 of 25 Teton meadow sites were positively located.Identifying meadow pixels for analysisThe native MODIS 250-meter grid was reprojected...
This dataset is a continuous parameter grid (CPG) of normal (average) annual precipitation data for the years 1981 through 2010 in the Pacific Northwest. Source precipitation data was produced by the PRISM Climate Group at Oregon State University.
These datasets are continuous parameter grids (CPG) of permeability (and impermeability) of surface geology in the Pacific Northwest. Source data come from work by Chris Konrad, U.S. Geological Survey (USGS), and geologic map databases produced by USGS scientists.
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This dataset includes electrical resistance data from a network of 50 data loggers that was installed throughout the Willow-Whitehorse watershed of SE Oregon in September 2014. Data loggers were downloaded in August 2015 and September 2016. These data loggers were used as “electrical resistance” (ER) sensors, following Chapin et al. 2014. The sensors were Onset HOBO Pendant temperature data loggers that were modified to monitor streamflow intermittency and determine the timing of stream drying.
In the Southeastern U.S. rapid urbanization is a major challenge to developing long-term conservation strategies. The SAMBI DSL project used predicted urban growth models described herein to inform future landscape conditions that were also based climate change impacts and vegetative community succession. These future landscape conditions were then applied as a context for land use and management decisions in conservation planning. SLEUTH, named for the model input datasets (Slope, Land use, Excluded, Urban, Transportation and Hillshade) is the evolutionary product of the Clarke Urban Growth Model that uses cellular automata, terrain mapping and land cover change modeling to address urban growth (Jantz et al, 2009;...
In the Southeastern U.S. rapid urbanization is a major challenge to developing long-term conservation strategies. The SAMBI DSL project used predicted urban growth models described herein to inform future landscape conditions that were also based climate change impacts and vegetative community succession. These future landscape conditions were then applied as a context for land use and management decisions in conservation planning. SLEUTH, named for the model input datasets (Slope, Land use, Excluded, Urban, Transportation and Hillshade) is the evolutionary product of the Clarke Urban Growth Model that uses cellular automata, terrain mapping and land cover change modeling to address urban growth (Jantz et al, 2009;...
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This dataset includes stream temperatures from two data loggers installed at one site in the Little Blitzen River of SE Oregon as part of a redband trout (Oncorhynchus mykiss gairdnerii) study. The site was used as an undisturbed reference in comparison with similar temperature monitoring sites in the Willow-Whitehorse watershed that experienced a 2012 fire that burned nearly the entire watershed.
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The files in the sub-folder "1. Juvenile coho salmon abundance and survival" consist of fish survey data and the associated analysis. The file "02_Fish survey data_all events_2019-11-27.csv" contains the actual fish survey data that was collected in Mason Creek, tributary of East Fork Lewis River, SW Washington, during summer of 2017. The protocol for the fish surveys are outline in the file "Fish Rescue Field Protocol_2017_FINAL VERSION_2017-06-01.pdf". The abundance and survival analysis can be found in the file "Juvenile MR abundance_Coho_02Contraints_2019-12-02.R". This file should be loaded through the .Rproj file "Fish Abundance.Rproj". There are many files needed to run the analysis that consist of summaries...
This dataset is a continuous parameter grid (CPG) of normal (average) annual maximum air temperature data for the years 1981 through 2010 in the Pacific Northwest. Source temperature data was produced by the PRISM Climate Group at Oregon State University.
These datasets are continuous parameter grids (CPG) of topography data in the Pacific Northwest. Datasets include stream slope, basin slope, elevation, contributing area, and topographic wetness index. Source data come from the U.S. Geological Survey National Elevation Dataset.
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This dataset includes spatial location information from 167 temperature data loggers that were installed throughout the Willow/Rock/Frazer watersheds of northern Nevada between July 30 and August 14, 2015. One hundred twelve data loggers were installed in stream channels (some of which were dry), 50 data loggers were installed outside the stream channel to measure air temperature, and 5 data loggers were installed on ridgetops to measure air temperature across the watershed.
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Locating meadow study sitesMeadow centers as recorded in the ‘Copy of sitecords_areaelev from Caruthers thesis.xls’ file delivered by Debinski in November 2012 were matched to polygons as recorded in files ‘teton97map_area.shp’ and ‘gallatin97map_area.shp’ both also delivered by Debinski in November 2012.In cases where the meadow center did not fall within a meadow polygon, if there was a meadow polygon of the same meadow TYPE nearby (judgment was used here), the meadow center was matched with the meadow polygon of same meadow TYPE. In total, 29 of 30 Gallatin meadow sites and 21 of 25 Teton meadow sites were positively located.Identifying meadow pixels for analysisThe native MODIS 250-meter grid was reprojected...
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This dataset includes stream temperatures from a network of 112 data loggers that was installed in stream channels throughout the Willow/Rock/Frazer watersheds of northern Nevada between July 31 and August 15, 2015. Ninety-seven data loggers were recovered and downloaded in late July 2016.
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This dataset represents the extent of urbanization (for the year indicated) predicted by the model SLEUTH, developed by Dr. Keith C. Clarke, at the University of California, Santa Barbara, Department of Geography and modified by David I. Donato of the United States Geological Survey (USGS) Eastern Geographic Science Center (EGSC). Further model modification and implementation was performed at the Biodiversity and Spatial Information Center at North Carolina State University. Purpose: Urban growth probability extents throughout the 21st century for the Southeast Regional Assessment Project, which encompasses the states of Alabama, Florida, Georgia, Kentucky, Mississippi, North Carolina, South Carolina, Tennessee...
map background search result map search result map Hydrological Analysis of Greater Yellowstone Ecosystem Montane Meadow Condition using MODIS data Data set for Developing Long-term Urbanization Scenarios for the Caribbean LCC as Part of the Southeast Regional Assessment Project Stream Temperature Data in the Little Blitzen watershed of SE Oregon, 2009-15 An analysis of montane meadow drying in the Greater Yellowstone Ecosystem using remotely sensed NDVI from the MODIS period of record (hq_nvdi) An analysis of montane meadow drying in the Greater Yellowstone Ecosystem using remotely sensed NDVI from the MODIS period of record (lsp metrics) Electrical resistance data from the Willow-Whitehorse watersheds of southeast Oregon, USA, 2014-2016 Stream temperature data in Willow/Rock/Frazer watersheds of northern Nevada, 2015-16 Temperature data loggers in Willow/Rock/Frazer watersheds of northern Nevada, 2015 Esri Service Definition file containing all SPC rasters (PROSPER) Streamflow Permanence Probability rasters, 2004-2011, Version 2.0 (PROSPER) Juvenile coho salmon stream survey data and associated analysis to estimate abundance and survival in Mason Creek, tributary of East Fork Lewis River, SW Washington, during summer of 2017 Stream Temperature Data in the Little Blitzen watershed of SE Oregon, 2009-15 Juvenile coho salmon stream survey data and associated analysis to estimate abundance and survival in Mason Creek, tributary of East Fork Lewis River, SW Washington, during summer of 2017 Hydrological Analysis of Greater Yellowstone Ecosystem Montane Meadow Condition using MODIS data An analysis of montane meadow drying in the Greater Yellowstone Ecosystem using remotely sensed NDVI from the MODIS period of record (hq_nvdi) An analysis of montane meadow drying in the Greater Yellowstone Ecosystem using remotely sensed NDVI from the MODIS period of record (lsp metrics) Electrical resistance data from the Willow-Whitehorse watersheds of southeast Oregon, USA, 2014-2016 Temperature data loggers in Willow/Rock/Frazer watersheds of northern Nevada, 2015 Stream temperature data in Willow/Rock/Frazer watersheds of northern Nevada, 2015-16 Esri Service Definition file containing all SPC rasters (PROSPER) Streamflow Permanence Probability rasters, 2004-2011, Version 2.0 (PROSPER) Data set for Developing Long-term Urbanization Scenarios for the Caribbean LCC as Part of the Southeast Regional Assessment Project