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Background Deoxyribonucleic acid (DNA) is the hereditary material in organisms that contains the biological instructions for building and maintaining them. The chemical structure of DNA is the same for all organisms, but differences exist in the order of the DNA building blocks, known as base pairs. Unique sequences provide a means to identify individual species and detect their presence within aquatic or terrestrial environments. Environmental DNA (eDNA) is nuclear or mitochondrial DNA that is shed from an organism into the environment. Sources of eDNA include feces, mucous, and gametes; shed skin; and carcasses. In aquatic environments, eDNA is diluted and distributed by currents and other hydrological processes....
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Background: The waters of the Mohawk River and its tributaries are inhabited by some of the most diverse fish communities in the Northeast. The construction of the Erie Canal in 1825, and later the Barge Canal in 1918, enabled the westward expansion of fishes from the Hudson River drainage as well as the eastward expansion of fishes indigenous to the Great Lakes drainage. Today, almost half of the fish species in the Mohawk River are nonnative (Carlson and Daniels, 2004) and George et al (2016), yet the fish community still fulfills many important economic and ecological functions. The Round Goby (Neogobius melanostomus) is an invasive benthic fish indigenous to Ponto-Caspian region of Eurasia that is invading eastward...
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Problem - Plastic debris pollution in freshwater ecosystems is becoming a major ecosystem and public health concern. Plastic pollution is now identified as the most abundant anthropogenic debris and it is found throughout all marine environments, comprising 60-80% of all floating debris (Eriksen et al., 2013). This debris can have a lasting effect on marine life through ingestion or entanglement (Laist, 1987). Recent studies in small tributaries and freshwater environments (Baldwin, 2016) indicate microplastic pollution is pervasive across all hydrologic environments. Mike Antidormi using a net sampler to collect a microplastic sample Microscope used for size, colors, and count for microplastics analyisis...
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Background Heavy metals, phosphorus, and organic contaminants in water and sediments of the lower Genesee River, resulted in the designation of fourteen beneficial uses as impaired in the Rochester Embayment Area of Concern (AOC). The benthic macroinvertebrate community or “benthos” Beneficial Use Impairment (BUI) was designated as degraded in the Genesee River because the New York State Department of Environmental Conservation (NYSDEC) impairment metrics generally identified slight to moderate impacts through the 1990s and 2000s. Accumulation of “sediments on more suitable substrates” and “contaminants in sediment of the Genesee River related to past municipal and industrial waste-water treatment plant discharges...
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Background Past water-quality issues in the St. Lawrence River at Massena, NY resulted in a determination that selected beneficial uses were impaired in a surrounding Area of Concern (AOC) and on the Canadian side of the international boundary (Cornwall, Ontario). The benthic macroinvertebrate community or “benthos” Beneficial Use Impairment (BUI) was designated degraded because impairment metrics were unavailable or inconclusive. Recent sampling efforts by New York State Department of Environmental Conservation (NYSDEC) as part of their Rotating Integrated Basin Studies (RIBS) program indicate that macroinvertebrate communities in some sections of the St. Lawrence River and its tributaries in the Massena AOC are...
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Background The Esopus Creek is located in the Catskill Mountains of New York State and is part of the New York City (NYC) drinking water supply system. The basin was dammed in 1915 to form the Ashokan Reservoir splitting the creek into Upper (upstream of the reservoir) and Lower segments. The drainage area of Upper Esopus Creek, between the source (Winisook Lake) and the Ashokan Reservoir is approximately 192 mi2. The Schoharie Reservoir, located 27 miles north of the Ashokan Reservoir, also supplies water to Upper Esopus Creek (and to the Ashokan Reservoir) via the Shandaken tunnel. Waters from the Schoharie watershed enter Upper Esopus Creek at the Shandaken portal and travel 18 km before entering the Ashokan...
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Background Acidification of lotic and lentic environments has been found to adversely affect the integrity of resident biological assemblages. These effects have been particularly severe in poorly buffered regions like the Western Adirondacks. Although the Clean Air Act and its amendments have greatly reduced levels of atmospheric deposition, many streams in this region are still chronically or episodically acidified. In-stream and watershed-wide liming are two directed-mitigation techniques which could be used to accelerate ecosystem recovery and help restore the condition of biological assemblages. The costs and abilities (as well as effective duration) of these techniques to improve water and soil chemistry,...
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Background Fish communities of the mainstem Mohawk River and Barge Canal have been well-documented (Carlson, 2015; George et al., 2016) but comparatively less information is available regarding the current status of fish communities in tributaries to the Mohawk River. This information gap is problematic because long-term shifts in species distributions or abundances due to climate change, eutrophication, or other anthropogenic stressors may go unnoticed in the absence of baseline data. More importantly, an approaching invasive fish species, the Round Goby (Neogobius melanostomus), is expected to colonize much of the Mohawk River and the lower portion of many major tributaries. Introductions of Round Goby have had...
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Background Discharges from non-point sources, municipal and industrial point sources, and combined sewage overflows over the last century resulted in elevated levels of heavy metals, conventional pollutants, phosphorus, and toxic organic contaminants in water and sediments of the Lower Genesee River and Rochester Embayment. As a result, the zooplankton and phytoplankton or “plankton” communities were designated as one of fourteen Beneficial Use Impairments (BUI); i.e., the resource was either impaired or in need of assessment in the Rochester Embayment Area of Concern (AOC). The Rochester Embayment Remedial Action Committee (RAC) was formed by the New York State Department of Environmental Conservation (NYSDEC)...
Categories: Data, Project; Types: Downloadable, Map Service, OGC WFS Layer, OGC WMS Layer, Shapefile; Tags: Aquatic Community Health, Aquatic Community Health, Biogeochemical and Hydrologic Assessment, Biogeochemical and Hydrologic Assessment, BiogeochemicalandHydrologicAssessment, All tags...
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Background With few exceptions, the contemporary and past effects of acidification on fish populations and communities in streams across acid-sensitive regions of NY have not been documented. The pervasive lack of information only permits anecdotal insight into the spatial effects of acidification on stream-fish assemblages and essentially precludes any broad effort to quantify temporal trends and potential recovery of fish assemblages in less acidic or less toxic streams. Though the effects of acidification on fish assemblages have been qualified in several streams of the eastern Adirondacks during 1979, the 1980s, and early 2000s, (Schofield and Driscoll 1987; Simonin et al. 2005) quantitative impacts were...
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Background The New York State Department of Environmental Conservation (NYSDEC) and Adirondack Lakes Survey Corporation (ALSC) repeatedly surveyed fish assemblages and characterized water chemistry from 44 to 52 lakes during the periods 1984-1987 and 1994-2005, and 2008-2012 to document the regional effects of acidic deposition and potential recovery associated with the 1990 Clean Air Act Amendment (CAAA) under the Adirondack Long-Term Monitoring (ATLM) Project. An initial analysis of changes in fish assemblages between the periods 1984-1987 and 1994-2005 noted modest and mixed recoveries, identified five fish-community response/recovery classes, and helped to devise a fish-community index based on species acid...
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Background Forested watersheds in the southwestern Adirondack Mountains of New York received some of the most acidic deposition in North America from the 1970s through much of the 1990s (NADP 2005). Thus it is not surprising that associated effects on surface-water quality and ecosystems in lakes and streams of the southwestern Adirondack Mountains of New York were investigated to various extents over the past 35 years; first to document acidification effects and then to evaluate potential recovery. In fact, evidence of adverse impacts on water quality and aquatic ecosystems across the region provided much support for implementation of the Clean Air Act (CAA) of 1990. Although the underlying effect mechanisms were...
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Background Although New York State has more than 70,000 miles of streams and rivers, little is known about the status, distribution, and trends of mercury (Hg) levels in stream fish, or the environmental drivers of these patterns. Streams and their riparian zones provide critical habitat for fish, birds, mammals, reptiles and amphibians, and serve as the interface between aquatic and terrestrial Hg transfer, transformations (most notably methylation) and bioaccumulation. Importantly, monitoring data from lakes (e.g., Simonin et al. 2006) does not transfer reliably to streams because of fundamental differences in Hg cycling and bioaccumulation processes. An assessment of fish Hg bioaccumulation focused on New...
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The current Adirondack Long-Term Monitoring Program combines monitoring of streams and soils based on a watershed design. Not only are headwater streams an important component of Adirondack ecosystems, they are closely tied to the terrestrial environment through runoff that is strongly influenced by soil and vegetation processes. This linkage makes headwater streams a useful tool for monitoring the overall condition of the watershed, and by combining stream and soil monitoring within watersheds, the response of Adirondack ecosystems to environmental disturbances such as acid rain and climate change can be better understood. For example, the unexpectedly slow reversal of stream acidification from decreased atmospheric...
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Background: Streams are ecologically, culturally, and economically important systems that are subject to impacts from a large array of human activities. There has been a relatively recent increase in efforts to manage, protect, and restore streams that have experienced physical, chemical, and biological degradation. Unfortunately, interest in any single restoration effort tends to be relatively short lived, and despite spending >$1 billion annually in the U.S. on stream restoration, little or no effort is devoted to evaluating the effectiveness or ecological success of most restoration projects (Bernhardt et al., 2005; Roni and Quimby, 2005). The limited post-restoration monitoring that occurs in many restoration...
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Background: The waters of the Mohawk River basin are inhabited by one of the richest fish communities on the East Coast. The American Eel, Anguilla rostrata, is a unique member of this community, exhibiting a catadramous (maturing in fresh water and spawning in salt water) life history. Like many migratory fish, the American Eel has suffered a general decline across the East Coast largely attributed to barriers to migration and habitat degradation and other anthropogenic disturbances to the point that the species has been recommended for listing under the Endangered Species Act twice in the past ten years A recent study by Machut et al. (2007) and the implementation of a NYSDEC-initiated citizen science juvenile...
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Problem The mainstem of the Mohawk River extends from Lake Delta Dam near Rome, NY downstream to its confluence with the Hudson River near Cohoes, NY. It supports a diverse fishery that is used extensively by recreational anglers. Smallmouth bass (Micropterus dolomieu) and walleye (Sander vitreus) are among the most popular game species with anglers but past biological surveys have documented at least 56 fish species that inhabit the river. An extensive fish survey of the Lower Mohawk River was last conducted by the New York State Department of Environmental Conservation (NYSDEC) from 1979-1983. Some key findings of this research include: • the river supported an abundant and fast growing smallmouth bass...
    map background search result map search result map Response of Fish Assemblages to Changing Acid-base Chemistry in Adirondack Long Term Monitoring Lakes, 1984-2012 Estimating Acute and Chronic Toxicity of Waters from the Rochester Embayment Area of Concern Using Two Plankton Species Sediment toxicity and status of benthic invertebrate communities in the St. Lawrence River and its tributaries within the Massena Area-of-Concern Sediment Toxicity and Condition of Benthic Invertebrate Communities in the Rochester Embayment Area-of-Concern Spatiotemporal trends in fish assemblages of the Mohawk River Assessing Spatiotemporal Patterns in Fish Assemblages from Acid-Sensitive Streams in the Adirondack and Catskill Mountains Quantitative Assessment of Water Quality in Upper Esopus Creek: Fish, Macroinvertebrates, Periphyton, Turbidity, and Nutrients Emerging Methods for Detection and their Potential for Inventorying Brook Trout Populations in Streams of the Western Adirondacks Long-term Effects of the Clean Air Act on Water Toxicity and Brook Trout Survival in Acidified Streams of the Southwestern Adirondacks, 1984-2017 Effects of Watershed and In-stream Liming on Accelerated Recovery of Macroinvertebrate Assemblages in Tributaries to Honnedaga Lake Adirondack Long-Term Stream and Soil Monitoring Mercury Bioaccumulation in Fish in New York's Streams and Rivers Monitoring the Status and Expansion of Round Goby Populations in the Mohawk River/Barge Canal System Quantitative Fish Surveys of Mohawk River Tributaries Status of American Eel populations in the Mohawk River Basin Mohawk Microplastics Response of fish assemblages and habitat to stream restoration in the Ashokan Watershed Effects of Watershed and In-stream Liming on Accelerated Recovery of Macroinvertebrate Assemblages in Tributaries to Honnedaga Lake Sediment toxicity and status of benthic invertebrate communities in the St. Lawrence River and its tributaries within the Massena Area-of-Concern Estimating Acute and Chronic Toxicity of Waters from the Rochester Embayment Area of Concern Using Two Plankton Species Sediment Toxicity and Condition of Benthic Invertebrate Communities in the Rochester Embayment Area-of-Concern Quantitative Assessment of Water Quality in Upper Esopus Creek: Fish, Macroinvertebrates, Periphyton, Turbidity, and Nutrients Response of fish assemblages and habitat to stream restoration in the Ashokan Watershed Emerging Methods for Detection and their Potential for Inventorying Brook Trout Populations in Streams of the Western Adirondacks Long-term Effects of the Clean Air Act on Water Toxicity and Brook Trout Survival in Acidified Streams of the Southwestern Adirondacks, 1984-2017 Assessing Spatiotemporal Patterns in Fish Assemblages from Acid-Sensitive Streams in the Adirondack and Catskill Mountains Spatiotemporal trends in fish assemblages of the Mohawk River Monitoring the Status and Expansion of Round Goby Populations in the Mohawk River/Barge Canal System Quantitative Fish Surveys of Mohawk River Tributaries Status of American Eel populations in the Mohawk River Basin Response of Fish Assemblages to Changing Acid-base Chemistry in Adirondack Long Term Monitoring Lakes, 1984-2012 Adirondack Long-Term Stream and Soil Monitoring Mercury Bioaccumulation in Fish in New York's Streams and Rivers