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This U.S. Geological Survey (USGS) data release contains the data used in the USGS Scientific Investigations Report 2018-5053 entitled "An exploratory Bayesian network for estimating the magnitudes and uncertainties of selected water-quality parameters at streamgage 03374100 White River at Hazleton, Indiana, from partially observed data." The four datasets, which contain only ASCII characters in a column-oriented format, are: (1) sel_qw_parm_full_time_series.csv: A comma-delimited file containing an irregular time series of 713 rows of discrete water-quality measurements that start on February 21, 1973 and end on September 14, 2016. (2) baye_network_initialize.cas: This tab-delimited file can be used to initialize...
These data were compiled here to fit various versions of Bayesian population models and compare their performance, primarily the time required to make inferences using different softwares and versions of code. The humpback chub data were collected by US Geological Survey and US Fish and Wildlife service in the Colorado and Little Colorado Rivers from April 2009 to October 2017. Adult fish were captured using hoop nets and electro-fishing, measured for total length and given individual marks using passive integrated transponders that were scanned when fish were recaptured. The other three datasets were collected by US Forest Service. Owl data for the N-occupancy model was collected between 1990 and 2015. Owl data...
Desert spring wetlands host many endemic species that require aquatic habitat and are isolated by the surrounding xeric terrestrial habitat. The Dixie Valley Toad (Anaxyrus williamsi) is a recently described anuran species endemic to desert spring wetlands in the Dixie Valley, Churchill County, Nevada, USA. Given this species was only recently recognized as distinct from Anaxyrus boreas, little is known about its ecology and habitat requirements. These data represent the results of surveys for Dixie Valley Toads conducted from April 2018 to May 2021 in Churchill County, Nevada, USA and associated covariates from surveys and study sites. The potential wetland habitat for the Dixie Valley Toad was divided into 20...
The American alligator (Alligator mississippiensis) is a species of ecological and economic importance in the southeastern United States. Within South Carolina, alligators are subject to private and public harvest programs, as well as nuisance removal. These management activities can have different impacts across alligator size classes that may not be apparent through widely-used monitoring techniques such as nightlight surveys. We synthesized multiple datasets within an integrated population model (IPM) to estimate size class-specific survival and abundance estimates, that would not be estimable through separate, non-integrated modeling frameworks. The IPM framework included a multistate mark-recapture-recovery...
Estimating species response to environmental change is a key challenge for ecologists and a core mission of the USGS. Effective forecasting of species response requires models that are detailed enough to capture critical processes and at the same time general enough to allow broad application. This tradeoff is difficult to reconcile with most existing methods. We propose to extend and combine existing models that operate at different scales and with different levels of data complexity into a modeling framework that will allow robust estimation of population response to environmental change across a species’ range. This integrated modeling is now possible with the increasing development and application of population...
This dataset includes records of captures of San Francisco gartersnakes (Thamnophis sirtalis tetrataenia) collected at five sites from 2007 to 2020. The data include measurements of snake snout-vent length to estimate growth patterns, snake sex, and the record of all captures of individual snakes for estimating capture probability, availability for capture, and survival. These data support the following publication: Rose, J.P., Kim, R., Schoenig, E.J., Lien, P.C. and Halstead, B.J., 2022. Integrating growth and survival models for flexible estimation of size-dependent survival in a cryptic, endangered snake. Ecology and Evolution, 12(4), https://doi.org/10.1002/ece3.8799.
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