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Data are time series of substrate grain size, remotely sensed water column turbidity, and measures of abundance (e.g., density, percent cover) of the nearshore subtidal (3-17 m depth) benthic community (vegetation, invertebrates, and fish) collected before (2008-2011) and during dam removal (2012-2014).
This Benthic Invertebrate Community Analysis dataset, a conceptual subgroup of the Lake Erie Ecological Investigations (LEEI) dataset, focuses on the benthic invertebrates sampled at Areas of Concern (AOCs) on Lake Erie. Per the Quality Assurance Project Plan (QAPP), the invertebrate samples were taken from sediments remaining from the sediment analysis. Identification of the invertebrates was completed by the same invertebrate taxonomist for both the 1998-2000 evaluation and 1986-87 historical evaluation (Smith et al. 1994) for increased consistency. Oligochaetes were identified to species if possible, chironomids were identified to genus, as adult specimens are needed for specific identification, and other taxa...
All gillnet data represented here expand upon vessel operations (OP table) data, all of which are collected by the United States Geological Survey, Great Lakes Science Center and its partners. The Gillnet Tables contain data collected from the research vessel deploying various gear used for gillnet data collection. The database uses sample_type to indicate the gear deployed. The tables relating to Gillnet are: GN_Annulus.csv, GN_Catch.csv, GN_Effort.csv, GN_Fish.csv, GN_L, GN_LF.csv, GN_OP.csv, GN_Prey.csv, GN_Stomach.csv, LMMB_Fish_Prey.csv, and LMMB_Invert_Prey.csv Data Quality: Note that the following data release is a snapshot of the database at the time of release. Some data quality checks are still being...
Deep-sea corals can create a highly complex, three-dimensional structure that facilitates sediment accumulation and influences adjacent sediment environments through altered hydrodynamic regimes. Infaunal communities adjacent to different coral types, including reef-building scleractinian corals and individual colonies of octocorals, are known to differ from background non-coral soft-sediment communities, often exhibiting higher macrofaunal densities and distinct community structure. However, the coral types have different morphologies, which may modify the adjacent sediment communities in discrete ways. Here we address two main questions: 1) how infaunal communities adjacent to deep-sea corals and their associated...
Deep-sea corals create complex habitats that support distinct sediment communities. Several deep-sea coral habitats were impacted by the 2010 Deepwater Horizon spill, and recovery of associated sediment communities may take several years. While spill-associated organic enrichment may lead to increased abundances of tolerant taxa, toxic effects of the spill may lead to declines in sensitive groups. However, temporal variability in coral-associated sediment macrofauna is unknown and represents an important consideration for post-spill community assessments. Here we examine how the macrofaunal communities change over time at impacted and reference sites. From 2010 to 2016, we examined macrofaunal communities at multiple...
Meiofauna higher taxa density (abundance per m2), and Nematode genera counts (100-150 individuals per slice) from multiple corer samples (0-5 cm sediment depth, Ocean Instruments MC800) taken during 2019 Research Vessel Point Sur expedition (#PS20-8) to the West Florida Slope and Escarpment, Eastern Gulf of Mexico. Conducted under the auspices of the NOAA funded (NA180AR0110285) project: Combining habitat suitability and physical oceanography for targeted discovery of new benthic communities on the west Florida slope (Hydrosmac). This dataset contains the original files submitted to the OBIS-USA IPT, the processed files that are published in the OBIS-USA IPT, and the scripts that were used in processing.
Categories: Data;
Tags: Gulf of Mexico,
Nematoda,
West Florida Slope and Escarpment,
benthos,
deep-sea,
Data to support the site characterization of locations sampled along the continental shelf and slope of the western U.S. coast off Washington, Oregon and California during the EXPRESS RL1905 expedition in 2019. Data consisted of tissue samples from fauna, sediments and particulate organic matter. These samples were analyzed for stable carbon and nitrogen isotopes to examine food web ecology. Additional observational data were collected through video analyses with efforts focused on documenting counts of fauna other than corals, sponges and fishes, as well as general habitat characteristics.
This part of DS 781 presents data for the habitat map of the seafloor of the Offshore of Santa Cruz map area, California. The vector data file is included in "Habitat_OffshoreSantaCruz.zip," which is accessible from https://doi.org/10.5066/F7TM785G. These data accompany the pamphlet and map sheets of Cochrane, G.R., Dartnell, P., Johnson, S.Y., Erdey, M.D., Golden, N.E., Greene, H.G., Dieter, B.E., Hartwell, S.R., Ritchie, A.C., Finlayson, D.P., Endris, C.A., Watt, J.T., Davenport, C.W., Sliter, R.W., Maier, K.L., and Krigsman, L.M. (G.R. Cochrane and S.A. Cochran, eds.), 2016, California State Waters Map Series—Offshore of Santa Cruz, California: U.S. Geological Survey Open-File Report 2016-1024, pamphlet 40 p.,...
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: CMHRP,
Coastal and Marine Hazards and Resources Program,
Continental/Island Shelf,
Fisheries,
Marine Nearshore Subtidal,
Hydroacoustic (sonar) data were collected for the Mississippi, St. Croix, and Minnesota Rivers for the development of high-resolution bathymetry and sidescan imagery. Small areas containing priority mussel habitat had additional collection efforts to map water velocities and bottom composition. Combining these data in a GIS can provide key components to characterizing physical benthic habitat for native mussels in a riverine environment. This information is highly desired by the National Park Service to more accurately assess environmental factors that influence native mussel distribution. The collaborative effort was funded by the Legislative-Citizen Commission on Minnesota Resources (LCCMR) Environment and Natural...
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Minnesota,
St. Croix River,
USGS-EMA-LOW-SB SMC: Freshwater mussels,
Wisconsin,
benthic ecosystems,
This dataset records Cladophora and associated benthic algae, collectively Cladophora community or submerged aquatic vegetation (SAV), biomass collected during the growing season of 2021 at stations located along the U.S. shoreline of Lakes Michigan, Huron, Erie, and Ontario. It also records a variety of supporting data collected at Cladophora measurement stations. These supporting data include: - seasonal time series of light, currents, wave action, temperature, specific conductivity, turbidity, pH, phycocyanin, chlorophyll, and dissolved oxygen from moored sensors at a subset of stations; - measurements of Secchi disk depth and water chemistry; - water column profiles of PAR, temperature, specific conductivity,...
This data release contains cyanotoxin concentrations for microcystins, cylindrospermopsins, anatoxins, and saxitoxins assessed using Enzyme-Linked Immunosorbent Assays (ELISA) on 363 samples collected from 82 surface-water sites located in the Cascade Range in Oregon, and eight sites located outside of the Oregon Cascade Range in Washington and California, during 2016-2020. Three sample types were assessed: 1) benthic colonies and mats of cyanobacteria (n=109), 2) plankton net tows (n=90), and 3) Solid Phase Adsorption Toxin Tracking samplers (SPATTs)(n=164).
Categories: Data;
Tags: Anderson Lake,
Aquatic Biology,
California,
Clackamas River,
Coast Fork Willamette River,
This is a tabular data set that includes intensity and saturation measurements of benthic invertebrates, sample residue, and preservative from samples stained with three fluorescent dyes for the development of a fluorescent staining method to enhance picking efficiency. This data set also contains data evaluating a selected fluorescent method's effects on picking efficiency and comparison to standard non-fluorescent methods for sorting benthic invertebrates.
Categories: Data;
Types: Citation;
Tags: Michigan,
USGS Science Data Catalog (SDC),
Washtenaw,
benthos,
environment,
This Sediment Analysis dataset, a conceptual subgroup of the Lake Erie Ecological Investigations (LEEI) dataset, focuses on the sediments sampled at Areas of Concern (AOCs) on Lake Erie. Per the Quality Assurance Project Plan (QAPP), sediment collections were a composite of at least five randomly selected samples collected from each site. Per an internal summary report, sediment samples were collected using a stainless steel Eckman dredge. Analytical methods and QA/QC were directed by the Patuxent Analytical Control Facility (PACF) of the US Fish and Wildlife Service. Per Dora Passino-Reader, the Geochemical & Environmental Research Group at Texas A&M University, College Station performed the analytical chemistry...
Data are from biological and physical environmental assessments conducted during 2018 in the lower Rouge River, MI. Sites were located upstream, downstream, and within the concrete channel section of the lower Rouge River. Water quality parameters, riparian zone characteristics, reptiles and amphibians, fishes, invertebrates, and river channel characteristics (water depth, flow, velocity) were assessed during 2018 from June-October. Previously established standardized sampling methods were used during all assessments.
This part of the data release lists 18 localities where the shells of the tiger lucine Codakia orbicularis, a large marine bivalve, have been found on Anegada. Typically the shells were encountered a few tens of centimeters below ground in pits dug into sand. Most of the examples listed in the dataset were previously reported in https://doi.org/10.1130/GES01356.l -- field occurrences described p. 322, provenance interpreted p. 324, discordant radiocarbon ages discussed p. 324, and examples illustrated and mapped in Figure A9. The radiocarbon ages from lucines tabulated in this data set range across six radiocarbon centuries.
Marine biodiversity is a key component of ocean health. Monitoring and understanding marine biodiversity is essential for our ability to forecast and respond to changes. The goal of the Arctic Marine Biodiversity Observing Network (AMBON) project is to demonstrate and build an operational marine biodiversity observing network from microbes to whales, integrating diversity levels from genetic to organismal. AMBON field region is located on the Chukchi Sea continental shelf in the US Arctic as a region exposed to climatic changes and anthropogenic influences. This dataset contains biomass and abundance data collected in the Chukchi Sea during the August 2017 Arctic Marine Biodiversity Observing Network (AMBON) research...
Categories: Data;
Tags: AMBON,
Amphipoda,
Annelida,
Arctic Marine Biodiversity Observation Network,
Arctic Ocean,
Data are time series of substrate grain size, vertical relief, and measures of abundance (e.g., density, percent cover) of the nearshore subtidal (5-16 m depth) benthic community (vegetation, invertebrates, and fish) collected before (2008-2011), during (2012-2014), and after dam removal (2015-2022).
This dataset records Cladophora and associated benthic algae, collectively Cladophora community or submerged aquatic vegetation (SAV), biomass collected during the growing season of 2020 at stations located along the U.S. shoreline of Lakes Michigan, Huron, and Erie. It also records a variety of supporting data collected at Cladophora measurement stations. These supporting data include: - measurements of Secchi disk depth and water chemistry; - water column profiles of temperature, specific conductivity, turbidity, pH, phycocyanin, chlorophyll, and dissolved oxygen; - diver observations of SAV, dreissenid mussels, round goby abundance, and substrate properties; - measurements of dreissenid mussel abundance and size...
Categories: Data,
Data Release - Revised;
Tags: CTD measurement,
Great Lakes Region,
Lake Erie,
Lake Huron,
Lake Michigan,
Hydroacoustic (sonar) data were collected for the Mississippi, St. Croix, and Minnesota Rivers for the development of high-resolution bathymetry and sidescan imagery. Small areas containing priority mussel habitat had additional collection efforts to map water velocities and bottom composition. Combining these data in a GIS can provide key components to characterizing physical benthic habitat for native mussels in a riverine environment. This information is highly desired by the National Park Service to more accurately assess environmental factors that influence native mussel distribution. The collaborative effort was funded by the Legislative-Citizen Commission on Minnesota Resources (LCCMR) Environment and Natural...
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Minnesota,
Mississippi River,
USGS-EMA-LOW-SB SMC: Freshwater mussels,
Wisconsin,
benthic ecosystems,
This dataset records Cladophora and associated benthic algae, collectively Cladophora community or submerged aquatic vegetation (SAV), biomass collected during the growing season of 2018 at stations located along the U.S. shoreline of Lakes Michigan, Huron, Erie, and Ontario. It also records a variety of supporting data collected at Cladophora measurement stations. These supporting data include: - seasonal time series of light, currents, wave action, temperature, specific conductivity, turbidity, pH, phycocyanin, chlorophyll, and dissolved oxygen from moored sensors at a subset of stations; - measurements of Secchi disk depth and water chemistry; - water column profiles of temperature, specific conductivity, turbidity,...
Categories: Data,
Data Release - Revised;
Tags: Aquatic Biology,
CTD measurement,
Ecology,
Great Lakes Region,
Lake Erie,
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