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These data consist of a multi-trophic, day vs. night, nearshore to offshore transect approach for data collection for this Cooperative Science and Monitoring Initiative effort at two northwestern Lake Huron sites near Hammond Bay and Thunder Bay, Michigan. Zooplankton and Mysis samples were collected monthly from April-October while benthos and prey fish samples were collected seasonally during Spring, Summer, and Fall. Invertebrate taxa (zooplankton, Mysis, benthic macroinvertebrates) were identified, enumerated, and measured using a dissecting microscope. Diet items of the prey fish were processed similarly to the other samples in terms of taxonomy. These data were used to calculate densities of fish prey items...
From 2 April - 29 April 2022, a Virginia Tech team of 2-3 sampled the macroinvertebrate community in 30 Coastal Plain streams (Delaware, Maryland and Virginia, USA) as part of a larger stream-health study including other teams who surveyed geomorphology, water quality, flow, temperature,fish community, and fish health at the same 30 streams. Macroinvertebrates were sampled using a 250 micrometer mesh slack sampler on a known area. At each stream, samples were collected in two ways. 1) Five slack samples were taken in riffles according to the USGS National Water-Quality Assessment protocol, and 2) Five additional slack samples were collected in the most productive available habitat types such as woody debris, undercut...
These data consist of larval fish and water profile data collected with a nearshore to offshore transect approach at 9 transects throughout Lake Huron. Larval fish and their stomach contents were identified, enumerated, and measured (if possible) using a dissecting microscope. These data were used to calculate densities of potential fish prey items (what is available in the environment) and compare that to what the fishes ate for selectivity analysis. Larval fish age estimation based on daily growth rings from otoliths was also conducted. These data are in raw form. The water profile data were collected using a bathythermograph and bin-averaged at the 1 m level. Environmental prey data are available at the following...
This is a child item of the USGS Data Release: https://doi.org/10.5066/P9QF8RR5 This dataset is a single comma-delimited text file (.csv). Data include the name of lakes where samples were obtained, the historical dynamics of that lake, the sampled community type, and the dry mass of annual new growth. Shrub community measurements are a combination of understory mass from quadrat harvests and shrub stem mass derived from published allometric equations.
This is a child item of the USGS Data Release: https://doi.org/10.5066/P9QF8RR5 This dataset is a single comma-delimited text file (.csv). Data include the name of lakes where samples were obtained, soil pH, electrical conductivity (EC), water content (VWC), and bulk density (BD) of soil core samples within organic soil horizon in lake-margin wetland plant communities.
This is a child item of the USGS Data Release: https://doi.org/10.5066/P9QF8RR5 Total and organic carbon values from soil samples taken from the Yukon River Basin, Alaska. These samples were used to create a relationship between total carbon and organic carbon for samples which were only run for total carbon.
Datasets for Evaluation and Review of Ecology-Focused Stream Studies, Fountain Creek Basin, Colorado
These data were used to describe temporal trends in fish and invertebrate communities in the Scientific Investigators Report: Evaluation and Review of Ecology-Focused Stream Studies to Support Cooperative Monitoring, Fountain Creek Basin, Colorado. This data release consists of invertebrate data collected between 1985 and 2022, fish data collected between 2003 and 2022, and the input and output files from the trend analyses.
Data includes satellite derived pre-fire functional group cover of annual and perennial herbaceous, shrubs, bareground and litter across four rangeland megafires in the Western US, as well as field estimated invasive annual grass measurements from the 2nd to 3rd years post-fire. Additional landscape and restoration treatment covariates hypothesized to influence post-fire invasive annual grass cover are included.
Fifteen fires from the Chronosequence dataset (see Knutson et al. 2014) were visited in 2012 and 2013 and surveyed for cover of lichens and mosses. Fires were selected to cover the range of average precipitation for each of three water years following fire, fire severity, time since fire, season of ignition, total acres burned and grazing intensity. Cattle grazing was characterized by distance from water sources for cattle, cow dung density counts and Animal Unit Months from the Rangeland Administration System of the Bureau of Land Management. Fire was characterized by whether or not a site burned, time since fire, the area burned, and an estimated amount of shrub cover consumed by the fire as compared to seemingly...
This is a child item of the USGS Data Release: https://doi.org/10.5066/F7513WCB. These data are part of the Gulf Watch Alaska (GWA) long-term monitoring program, nearshore monitoring component. The dataset has five comma separated values (.csv) file exported from a Microsoft Access relational database. The data consist of percent cover and point contact data from algae and invertebrates at intertidal rocky substrate sampling sites. Tables include: 1) intertidal cover, 2) intertidal percent cover, 3) intertidal top layer percent cover, 4) intertidal substrate percent cover, and 5) taxonomic classification table. Version History: First release: September 2022 Revised: October 2023 (ver. 2.0) Revised: October 2024...
Categories: Data,
Data Release - Revised;
Tags: Alaska,
Alaska Peninsula,
Algae,
Algae,
Animals/Invertebrates,
Twenty quadrats within the burn perimeter of a September 2021 wildfire outside of Boise, Idaho were surveyed for the abundance of fire effects, biocrusts and vascular plants immediately post-fire. The fire was too small to be named. Char was measured as a proxy for fire intensity. Biocrusts were surveyed by morphogroup (crustose lichens, cup lichens, fruticose lichens, gelatinous lichens, short moss, tall moss) and vascular plants were surveyed by functional group (annual forbs, perennial grasses). Char was measured ocularly and biocrust/plant abundance was measured via point-vertex intercept at 40 points per quadrat. These data support the following publication: Condon, L.A., Shinneman, D.J., Rosentreter, R. and...
Vascular plant data collected at the South Unit of Theodore Roosevelt National Park, ND, USA in 1996
This data release contains three data sets. The data were collected in 1996 at the South Unit of Theodore Roosevelt National Park, ND, USA. The main data set comprises the list of plant species observed and includes the transect, plot number, plot size, and vegetation type where each species was found. A second data set has the locations of the transects, along with their IDs which can be linked to the species list. The final data set is a list of nomenclature updates and species that had duplicates in ITIS, along with the currently accepted scientific names of these species.
Categories: Data;
Tags: Botany,
Ecology,
Land Use Change,
North Dakota,
Theodore Roosevelt National Park,
Seven exclosures that were part of the original 28 Taylor Grazing Act exclosures across northern Nevada were surveyed for cover of biological soil crusts in May 2018. Surveys consisted of 15 quadrats both inside and outside of the exclosures. Quadrats were used to measure biocrust cover via point-intercept at 39 vertices within each quadrat. Cattle grazing outside of the exclosures was characterized by distance from the closest water source as well as permitted, suspended and active Animal Unit Months from the Rangeland Administration System. Abundance of cyanobacteria in the soils was assessed with the moistened soil method.
Sixty-eight monitoring plots within the Browns Park National Wildlife refuge in Northwest Colorado were surveyed in the Summer of 2007 and 2021 for vegetation-community changes after grazing cessation in 1986. Surveys consisted of line-point intercept measurements at 0.5m intervals along three 15-m transects arranged in a spoke around plot center at each plot location.
These data are part of the Gulf Watch Alaska (GWA) long-term monitoring program, nearshore monitoring component. The dataset is comprised of six comma separated values (.csv) file exported from a relational database. The data consist of 1) summer marine bird and mammal densities, 2) winter marine bird and mammal densities, 3) summer marine bird and mammal observations, 4) winter marine bird and mammal observations, 5) summer marine bird and mammal survey strip transects, and 6) winter marine bird and mammal survey strip transects. Version History: First release: December 2017 Revised: July 2024 (ver. 2.0)
Categories: Data,
Data Release - Revised;
Tags: Alaska,
Animals/Vertebrates,
Biota,
Birds,
Coastal ecosystems,
A dataset of the macroinvertebrates collected for a trout production study from August 2017- August 2018 in northern New Mexico. The invertebrates are sampled from the benthos, drift, and trout stomachs (via gastric lavage). The drift and benthic invertebrate data represent subsampled individuals. There is a separate file that documents the percent of original sample. The diet samples were not subsampled. The dataset includes individual invertebrates identified to taxonomic Order, lifestage, habitat, their measured lengths, and regressed dry masses.
This is a child item of the USGS Data Release: https://doi.org/10.5066/P9QF8RR5 This dataset is a single comma-delimited text file (.csv). Data include the name of lakes where samples were obtained, soil core dimensions, bulk density, and carbon/nitrogen content of soil core samples within the organic soil horizon in lake-margin wetland plant communities.
The 53 papers in this proceedings include a section celebrating the 25-year anniversary of the Shrub Sciences Laboratory (4 papers), three sections devoted to themes, genetics, and biodiversity (12 papers), disturbance ecology and biodiversity (14 papers), ecophysiology (13 papers), community ecology (9 papers), and field trip section (1 paper). The anniversary session papers emphasized the productivity and history of the Shrub Sciences Laboratory, 100 years of genetics, plant materials development for wildland shrub ecosystems, and current challenges in management and research in wildland shrub ecosystems. The papers in each of the thematic science sessions were centered on wildland shrub ecosystems. The field...
Categories: Publication;
Types: Citation;
Tags: biodiversity,
community ecology,
disturbance,
ecophysiology,
genetics,
Benthic invertebrate communities are monitored because the composition of those communities can affect and be affected by the water quality of an aquatic system. Benthic communities use and sometimes regulate the cycling of essential elements (for example, carbon). Benthic invertebrate taxa may also indicate acute and chronic stressors in an environment because they accumulate contaminants and can respond – sometimes dramatically - to oligotrophic and eutrophic conditions. Benthic communities affect water quality by grazing pelagic food resources and increasing the rate of nutrient regeneration through feeding and bioturbating sediments. South San Francisco Bay is a system dependent on phytoplankton as the base...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Alviso Slough,
Annelids,
Aquatic Biology,
Benthic Ecosystems,
Benthos,
To evaluate the ability of precipitation-based environmental DNA (eDNA) sample collection and mitochondrial 12S metabarcoding sequencing to reconstruct well-studied fish communities in lakes and rivers. Specific objectives were to 1) determine correlations between eDNA species detections and known community composition based on traditional field sampling, 2) compare efficiency of eDNA to detect fish biodiversity among systems with variable morphologies and trophic states, and 3) determine if species habitat preferences predicts eDNA detection. Fish community composition was estimated for seven lakes and two MIssissippi River navigation pools using sequence data from the mitochonrial 12S gene amplified from 10 to...
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