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This R code (Nest_Cards_QC.R) is used to process the raw legacy nest card data (1985 - 2019) and produce the quality controlled legacy nest card data for analysis and sharing. This code does not quality control the double searched plots (R2 plots in 1995-99), which is done in the file ‘PrepData.R’. Basic operations include transforming missing value to a common code, transforming other variable to match the data dictionary for nest cards, and resolving non-unique observer initials. The code requires the raw data (“1985-2019_Nest Cards_10-24-19_cleaned.xlsx”) and the table of observer names (“Observer Names_1985-2019_10-24-19.xlsx”). The code writes the QC nest card file “Nest_Cards_1985_2019_QC.csv”. Mostly obseration...
Categories: Data,
Software;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
The Desert Landscape Conservation Cooperative Land Cover Map shows land cover at a regional scale (1:2,500,000). The files provided are graphic design files that can be used to plot a publication-quality, poster-size map.Scale: 1:2,500,000 Map poster dimensions: 34 x 44 inches Data sources:Land cover from North American Environmental Atlas by the Commission for Environmental Cooperation, 2010. Physiographic regions from Natural Earth 1:10 million scale Physical Labels (3.0.0) derived from Patterson’s Physical Map of the World, 2008. Hydrography, populated places, and political boundaries from National Atlas of the United States, 2004. File descriptions: DLCC_LandCover.ai is an Adobe Illustrator file. DLCC_LandCover.pdf...
Categories: Data;
Types: ArcGIS REST Map Service,
ArcGIS Service Definition,
Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Academics & scientific researchers,
Conservation NGOs,
DATA ANALYSIS AND VISUALIZATION,
Data,
Data.gov Desert Landscape Conservation Cooperative,
The Gulf Coast Prairie Landscape Conservation Cooperative needed seamless landcover data for the south-central United States. This information is essential for developing computer modeling tools related to the conservation of many terrestrial species and determining the quality of vegetation to assess current and desired conditions.
Categories: Data,
Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: 2012,
Conservation NGOs,
DATA ANALYSIS AND VISUALIZATION,
DATA ANALYSIS AND VISUALIZATION,
Data Acquisition and Development,
Desert Landscape Conservation Cooperative Boundary delineates the spatial extent of the DLCC. The vector boundary is available as both a shapefile and KML file. This is a derivative product of the LCCs shapefile produced by the U.S. Fish and Wildlife Service, accessed from http:/http://www.fws.gov/GIS/data/national/ in 2014.To access the KML file, click on the ScienceBase URL and then select Open in Google Earth (KML). To access the shapefile (FWS_LCC_DLCC.shp), click on FWS_LCC_DLCC.zip linked from this product profile.
The Missouri Resource Assessment Partnership (MoRAP) of the University of Missouri, in conjunction with the Oklahoma Biological Survey of the University of Oklahoma, produced a vegetation and landcover GIS data layer for the eastern portions of Oklahoma. This effort was accomplished with direction and funding from the Oklahoma Department of Wildlife Conservation and state and federal partners (particularly the Gulf Coast Prairie and Great Plains Landscape Conservation Cooperatives of the U. S. Fish and Wildlife Service). The legend for the layer is based on NatureServe’s Ecological System Classification, with finer thematic units derived from land cover and abiotic modifiers of the System unit. Data for development...
abstract
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: EARTH SCIENCE > ATMOSPHERE,
EARTH SCIENCE > CLIMATE INDICATORS,
EARTH SCIENCE > HUMAN DIMENSIONS,
EARTH SCIENCE SERVICES,
map,
abstract
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: EARTH SCIENCE > ATMOSPHERE,
EARTH SCIENCE > CLIMATE INDICATORS,
EARTH SCIENCE > HUMAN DIMENSIONS,
EARTH SCIENCE SERVICES,
map,
abstract
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: EARTH SCIENCE > ATMOSPHERE,
EARTH SCIENCE > CLIMATE INDICATORS,
EARTH SCIENCE > HUMAN DIMENSIONS,
EARTH SCIENCE SERVICES,
map,
abstract
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: EARTH SCIENCE > ATMOSPHERE,
EARTH SCIENCE > CLIMATE INDICATORS,
EARTH SCIENCE > HUMAN DIMENSIONS,
EARTH SCIENCE SERVICES,
map,
abstract
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: EARTH SCIENCE > ATMOSPHERE,
EARTH SCIENCE > CLIMATE INDICATORS,
EARTH SCIENCE > HUMAN DIMENSIONS,
EARTH SCIENCE SERVICES,
map,
R code that takes in the nest capture history data (chdata.csv), reformats it for model fitting in Program Mark via the R package RMark. A series of models of increasing complexity are fit and compared using AIC. Output is written to text files for each model but is generally not used or saved. Code can be run to generate model results and R workspaces/ object to inspect parameter estimates. The primary purpose of this code is to explore model structures for predicting detection and as an attempt to reproduce historically used parameter estimates in past nest plot reports (e.g., Fischer et al. 2017 and earlier). Results from ‘Model 7’ are most similar to detection estimates used in the past.
Categories: Data,
Software;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOLOGICAL CLASSIFICATION,
This R code (YKDsalinity_QC.R) is used to process the raw legacy salinity data for fixed and random plots (2006 - 2019) and produce the quality controlled legacy salinity data for analysis and sharing (YKDsalinity_QC.csv). Basic operations include transforming missing value to a common code, transforming other variables to match the data dictionary, and cleaning spatial location issues. Of special note is that this QC process discover significant error in location data due to a variety of reasons so the random plot centers are added to the data table and should be used for analysis. The code requires the raw data (“Official_YKD.SALINITY.DATA.MASTER.2020.csv”), a definition of the nest plot study area (“NestPlotStudyAreaBoundary.geojson”),...
Categories: Data,
Software;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: BIOSPHERE,
BIOSPHERE,
BIOSPHERE,
DATA INTEROPERABILITY,
DATA INTEROPERABILITY,
abstract
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: EARTH SCIENCE > ATMOSPHERE,
EARTH SCIENCE > CLIMATE INDICATORS,
EARTH SCIENCE > HUMAN DIMENSIONS,
EARTH SCIENCE SERVICES,
map,
The Desert LCC identified the need for a Protected Areas spatial database that showed land ownership, management designations and conservation status for lands in the United States and Mexico. However, the existing Protected Areas database was found to be particularly prone to boundary and database errors that affected its potential use. This USGS project will develop a single, seamless, error-free Protected Areas dataset for the full geographic scope of the Desert LCC. This will involve acquiring numerous spatial layers from Federal, State, and NGO organizations which are responsible for administering and/or managing areas that have a designated protected status. Protected Area will be categorized as defined by...
Categories: Data,
Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: 2012,
AZ-01,
AZ-02,
AZ-03,
AZ-04,
The Desert Landscape Conservation Cooperative Shaded Relief Map shows political and physiographic features. The files provided are graphic design files that can be used to plot a publication-quality, poster-size map. Scale: 1:2,500,000Map poster dimensions: 34 x 44 inchesData sources:Elevation and ecoregions are from the North American Environmental Atlas by the Commission for Environmental Cooperation, 2007 and 2006, respectively. Hydrography, roads, populated places, and political boundaries are from the National Atlas of the United States, 2004. Shaded relief is from Natural Earth II, 2012.File descriptions:DLCC_basemap.ai is an Adobe Illustrator file (314 MB).DLCC_basemap.pdf is a Portable Document Format file...
This multi-layer GeoPackage contains the Alaska Arctic Coastal Plain Aerial Breeding Pair Survey design transects from 2007 to present. The original transects were created as shapefiles and imported to this SQLite database. Transects were saved as individual polylines named according to the year they were created (e.g., “main.ACP_2007_Trans,” “main.ACP_2008_Trans,” “main.ACP_2009_Trans,” etc.). These aerial transects were developed systematically from randomly-selected start points and created along constant lines of latitude. The inter-transect spacing in the low, medium, high, and very-high density strata varies so that areas with higher waterfowl density are surveyed more intensively. The current four-year rotating...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOSPHERE,
BIRDS,
DATA ANALYSIS AND VISUALIZATION,
R code that takes in the nest capture history data (chdata.csv), reformats it for model fitting in the Bayesian MCMC software JAGS via the R package jagsUI. Various generalized linear mixed models are fit using a Huggins two occasion capture history model structure as in Program Mark. A series of models of increasing complexity are fit and compared using DIC. Model text is written to text files for each model but is generally not used or saved. Posteriors are saved as Rworkspaces or written to text files for use in population estimation (nostpop.R). Code can be run to generate model results and R workspaces/objects to inspect parameter estimates. The primary purpose of this code is to compare various mixed model...
Categories: Data,
Software;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOLOGICAL CLASSIFICATION,
In 2019 a pilot study was conducted to determine the feasibility of using distance sampling to estimate density and population size of goose and eider nests on the Yukon-Kuskokwim Delta (YKD). Distance sampling (Buckland et al. 2001) is a common and well-understood method to estimate wildlife population size or density, especially for sparse and hard-to-detect populations. A main advantage of distance sampling is that it accounts for imperfect detection and gives precise estimates for a given level of effort relative to other methods. The objectives for the pilot project in 2019 was to (1) determine if distance sampling is feasible on the YKD, (2) determine what aspects of the field protocol need to be changed or...
Categories: Data,
Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOLOGICAL CLASSIFICATION,
This R code (eggs.R) inputs the quality controlled nest card data and (1) performs additional quality control on the egg code data, (2) reformat the eggs data into a tidy file of egg observations, (3) summarizes egg data into yearly means of initiation and hatch date based on incubation model, and (4) writes csv files for tidy egg data (eggs.csv) and yearly nest stats (yearstats.csv).
Categories: Data,
Software;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
The Desert Landscape Conservation Cooperative Watersheds Map shows hydrographic features including watersheds, streams and lakes at a regional scale. The files provided are graphic design files that can be used to plot a publication-quality, poster-size map. Scale: 1:2,500,000Map poster dimensions: 34 x 44 inchesData sources: Watershed boundaries are from the North American Environmental Atlas by the Commission for Environmental Cooperation, 2010. Hydrography, roads, populated places, and political boundaries are from the National Atlas of the United States, 2004. Natural Earth 1:10m Physical Labels (3.0.0) are derived from Patterson’s Physical Map of the World, 2008.File descriptions: DLCC_Watersheds.ai is an...
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