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This file contains results from the project "Assessing climate-sensitive ecosystems in the southeastern U.S.", funded by the Department of Interior's Southeast Climate Science Center. Metrics required to use the Habitat Climate Change Vulnerability Index (HCCVI) framework, as developed by NatureServe are reported in this spreadsheet. The ecosystems are: East Gulf Coastal Plain Near-Coast Pine Flatwoods, and the Nashville Basin Limestone Glade and Woodland.
This part of DS 781 presents data for the acoustic-backscatter map of Offshore of Pigeon Point map area, California. Backscatter data are provided as three separate grids depending on mapping system. This metadata file refers to the data included in "BackscatterB_7125_OffshorePigeonPoint.zip," which is accessible from https://doi.org/10.5066/F7513W80. These data accompany the pamphlet and map sheets of Cochrane, G.R., Watt, J.T., Dartnell, P., Greene, H.G., Erdey, M.D., Dieter, B.E., Golden, N.E., Johnson, S.Y., Endris, C.A., Hartwell, S.R., Kvitek, R.G., Davenport, C.W., Krigsman, L.M., Ritchie, A.C., Sliter, R.W., Finlayson, D.P., and Maier, K.L. (G.R. Cochrane and S.A. Cochran, eds.), 2015, California State Waters...
Categories: Data;
Types: Downloadable,
GeoTIFF,
Map Service,
Raster;
Tags: Acoustic Reflectivity,
Ano Nuevo,
Backscatter,
CMHRP,
Coastal and Marine Hazards and Resources Program,
This dataset contains the physical collection information (e.g., sample location, date, gear type) and microsatellite DNA genotype of egg and larval Lake Sturgeon collected in the St. Clair and Detroit rivers in 2015 and 2016. Individuals were genotyped for 18 microsatellite loci (13 disomic and 5 polysomic). Alleles (base pair sizes) were recorded as presence absence scores (1:present, 2:absent, 0:missing data) for all previously observed alleles. Thus individual genotypes were recorded as pseudo diploid dominant phenotypes resulting in individual vectors of length n=205 for each genotyped egg or larval individual.
Categories: Data;
Tags: Acipenser,
Acipenser fulvescens,
Acipenseridae,
Anthropogenic,
Anthropogenic Rock,
The Gulf Coastal Plains and Ozarks (GCPO) Landscape Conservation Cooperative (LCC) has conducted an ecological assessment of various landscape characteristics, or endpoints, outlined in the LCC Integrated Science Agenda. This data layer addresses the forested wetland amount desired landscape endpoint for the forested wetland ecosystem in the Mississippi Alluvial Valley subgeography of the GCPO LCC. This data was created by reclassification of the 2011 National Land Cover Dataset (NLCD) to pull out only the woody wetlands class (90) from the NLCD dataset.
Categories: Data;
Types: ArcGIS REST Map Service,
ArcGIS Service Definition,
Downloadable,
Map Service;
Tags: AQUATIC ECOSYSTEMS,
AQUATIC ECOSYSTEMS,
BIOSPHERE,
BIOSPHERE,
BIOSPHERE,
Limited midstory density was also identified in the Integrated Science Agenda as an important component of upland hardwood systems in the GCPO geography, with midstory coverage ≤20% indicating a healthy additional vertical strata in the system. Midstory is an important habitat component for several ISA priority species, particularly those avian species who require midstory structure for nesting such as the wood thrush (Hylocichla mustelina). We again used plot-level Forest Inventory and Assessment data imputed at 250 m resolution across the GCPO LCC to assess tree density. The USFS imputed tree density data product provides raster maps for the conterminous U.S. generated using 250 m resolution MODIS satellite imagery,...
Categories: Data;
Types: ArcGIS REST Map Service,
ArcGIS Service Definition,
Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: BIOSPHERE,
BIOSPHERE,
Data,
EARTH SCIENCE,
EARTH SCIENCE,
This data layer summarizes ecological systems and land cover classes described in state-level and national-level maps as Broadly Defined Habitats for groups of species of conservation concern. Each grid cell in the raster is assigned a Condition Index value based on desired condition metrics using ancillary datasets and a decision tree approach for each assessed habitat. Grid cells are also assigned bar code descriptors indicating which metrics contributed to the Condition Index score for that cell. This layer also contains information about potential habitats based on the LANDFIRE Biophysical Settings data layer. This layer was developed to support the next iteration of the Conservation Blueprint developed by the...
Categories: Data,
Map;
Types: ArcGIS REST Map Service,
ArcGIS Service Definition,
Downloadable,
Map Service;
Tags: Arkansas,
Ecological Systems,
Ecosystems,
Habitats,
Species of Concern,
Soils are a vast reservoir of organic carbon (C), rendering the fate of soil C an important control on the global climate system. Widespread changes in soil C storage capacity present a potentially strong feedback to global change. Yet, a comprehensive understanding of how soil C will respond to climate and/or land use disturbance remains illusive, resulting in major uncertainties in global climate models. Our working group will synthesize information on the processes controlling soil C storage across different spatial scales and develop new procedures to translate local measurements to the regional and global scale datasets used by models. These activities will improve our ability to map the vulnerability of soil...
Geographically Isolated Wetlands (GIWs) occur along gradients of hydrologic and ecological connectivity and isolation, even within wetland types (e.g., forested, emergent marshes) and functional classes (e.g., ephemeral systems, permanent systems, etc.). Within a given watershed, the relative positions of wetlands and open-waters along these gradients influence the type and magnitude of their chemical, physical, and biological effects on downgradient waters. In addition, the ways in which GIWs connect to the broader hydrological landscape, and the effects of such connectivity on downgradient waters, depends largely upon climate, geology, and relief, the heterogeneity of which expands with increasing scale. Developing...
Categories: Data,
Project;
Types: Downloadable,
GeoTIFF,
Map Service,
Raster;
Tags: Active,
All Working Groups,
Ecosystems,
Geographically isolated wetlands, depressional wetlands, perimeter,
Water,
River ecosystems support a wide diversity of biota, including thousands of fish species, which are variously adapted to the dynamic environments provided by flowing-water habitats. One of the primary ways that human activities diminish the biological capacity of rivers is by altering the natural hydrologic variability of river systems through regulation and diversion of streamflow for other uses. Managers may be able to avoid some of the worst effects of flow management on aquatic biota if we understand the mechanisms by which streamflow components, such as unusually high and low flow events, affect populations (e.g., by influencing recruitment and mortality). Numerous past studies have described correlative associations...
Wetlands provide many important ecosystem services, including wildlife habitat, water purification, flood protection, and carbon metabolism. Our ability to manage these services and predict the long-term health of wetlands is strongly linked to their carbon fluxes, of which methane (CH4) is a key component. Natural wetlands emit approximately 30% of global CH4 emissions, as their waterlogged soils create ideal conditions for CH4 production. They are also the largest, and potentially most uncertain, natural source of CH4 to the atmosphere. To understand and predict CH4 fluxes across wetlands globally, we propose the first synthesis of CH4 flux tower data accompanying a global database of CH4 emissions. By taking...
Categories: Project;
Tags: Active,
All Working Groups,
Ecosystems,
Energy and Minerals,
Land Resources,
The grizzly bear distribution boundary represents the estimated geographic extent of occupied range of the Yellowstone grizzly bear population for the period 2008-2022. The distribution boundary was delineated to provide reliable estimations of grizzly bear occupancy throughout time and for use as a monitoring tool in grizzly bear management and conservation.The boundary was delineated by the Interagency Grizzly Bear Study Team (IGBST) using an interpolation method based on grizzly bear VHF telemetry and GPS locations as well as verified observations and signs of grizzly bears inside the Greater Yellowstone Ecosystem during 2008 to 2022.
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Beaverhead-Deerlodge,
Bridger-Teton,
Caribou-Targhee,
Custer-Gallatin,
Ecology,
This data set shows Level I, II, and III ecological regions (ecoregions) of North America, and is an update and revision of files developed by Canada, Mexico, and the United States of America in the late 1990’s in a cooperative project for the Commission for Environmental Cooperation (CEC). These revised ecological regions were developed in a meeting between representatives of the three nations and CEC in April 2006 in Newport, Oregon. Ecoregions are areas of general similarity in ecosystems and in the type, quality, and quantity of environmental resources. The ecoregions in this data set are based on the premise that a hierarchy of ecological regions can be identified through the analysis of the patterns and...
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Ecoregions,
Ecosystem geography ,
Ecosystems,
Regional ecology
PEM_20K contains 1:20,000 PEM polygons with key and amalgamated (concatenated) attributes derived from the Resource Inventory Standards Committee (RISC) standard attributes. PEM divides the landscape into units according to a variety of ecological features including climate, physiography, surficial material, bedrock geology, soils and vegetation. PEM uses a modeling approach to ecosystem mapping, whereby existing knowledge of ecosystem attributes and relationships are used to predict ecosystem representation in the landscape. This layer is derived from the STE_TEI_ATTRIBUTE_POLYS_SP layer by filtering on the PROJECT_TYPE and PROJECT_MAP_SCALE attributes
Terrain Inventory Mapping (TIM) contains polygons with key and amalgamated (concatenated) attributes derived from the RISC (Resource Inventory Standards Committee) standard attributes. TIM is multi-purpose and divides the landscape into unit according to surficial material, surface expression and geomorphological process using the Terrain Classification System for British Columbia. Most of the inventory mapping was completed in the 1970's and 1980's on 1:50 000 scale base maps using air photo interpretation with selective field checking, and manual transfer and drafting of paper maps. These maps were later digitized and have been converted from IGDS or CAPAMP to ArcInfo to Geodatabase. This layer is derived from...
The USGS Western Ecological Research Center (WERC) comprises a dispersed science community collocated with DOI agencies, academic institutions, or proximal to critical ecosystems. WERC scientists conduct peer-reviewed research using innovative tools to provide natural resource managers with the knowledge to address challenges to ecosystem function and service in Pacific West landscapes. Four Scientific Themes define the research of WERC scientists: Species and Landscape Response to Human Activity Renewable energy development, urbanization, water abatement, prescribed fires, barriers to movement, and invasive species are among key factors that impact Pacific western US natural resources. To identify potential impacts...
Fresh water is arguably the most valuable resource on the planet, but human activities threaten freshwater ecosystems. For example, use of synthetic chemicals, such as pesticides, road salts, and nutrients, has led to the ubiquitous contamination of aquatic systems, jeopardizing the integrity of ecological communities. Given the importance biodiversity plays in maintaining ecosystem health and function and the continued decline of freshwater species, it is vital to understand the direct, indirect, and lasting effects of synthetic contaminants on biota in freshwater systems. The majority of our knowledge regarding contaminant effects is comprised of short-term, single-contaminant laboratory toxicity tests that describe...
This multi-layer GeoPackage contains the Alaska Arctic Coastal Plain Aerial Breeding Pair Survey design transects from 2007 to present. The original transects were created as shapefiles and imported to this SQLite database. Transects were saved as individual polylines named according to the year they were created (e.g., “main.ACP_2007_Trans,” “main.ACP_2008_Trans,” “main.ACP_2009_Trans,” etc.). These aerial transects were developed systematically from randomly-selected start points and created along constant lines of latitude. The inter-transect spacing in the low, medium, high, and very-high density strata varies so that areas with higher waterfowl density are surveyed more intensively. The current four-year rotating...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOSPHERE,
BIRDS,
DATA ANALYSIS AND VISUALIZATION,
R code that takes in the nest capture history data (chdata.csv), reformats it for model fitting in the Bayesian MCMC software JAGS via the R package jagsUI. Various generalized linear mixed models are fit using a Huggins two occasion capture history model structure as in Program Mark. A series of models of increasing complexity are fit and compared using DIC. Model text is written to text files for each model but is generally not used or saved. Posteriors are saved as Rworkspaces or written to text files for use in population estimation (nostpop.R). Code can be run to generate model results and R workspaces/objects to inspect parameter estimates. The primary purpose of this code is to compare various mixed model...
Categories: Data,
Software;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOLOGICAL CLASSIFICATION,
This is a geojson file that define the spatial polygon of the YKD nest plot study area. From 1998 to current, nest plot centroids are randomly selected from this area with the constraint that plots cannot overlap plots from the previous 5 years. This area also define the area of inference for design-based calculations of nest population estimates. Before 1998, larger areas were sampled, so this file does not apply to those years.
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOLOGICAL CLASSIFICATION,
This is the YKD nest card data from 1985 to 2019 produced after processing with the R script “Nest_Cards_QC.R”. This file (‘Nest_Cards_1985_2019_QC.csv’) should be used for producing population estimates and any other analyses. This file is what should generally be distributed for YKD nest card data requests.
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
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