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We will develop a set of linked models to help predict the effects of climate change on rivers and endangered species. These will include watershed- and reach-scale models to predict streamflow, water temperatures, and other fish habitat metrics under various climatic scenarios for the reaches used by species listed under the Endangered Species Act (ESA), plus a combined bioenergetics and life-cycle model (to be done by the U.S. Geological Survey [USGS]) to assess the impact of these factors on fish growth, reproduction, and survival. We propose to test the model framework at a site on the Methow River, Washington, to explore additional opportunities for collaboration and model development.
Categories: Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service,
ScienceBase Project;
Tags: Habitat,
climate change,
endangered species,
fish habitat,
food web,
All gillnet data represented here expand upon vessel operations (OP table) data, all of which are collected by the United States Geological Survey, Great Lakes Science Center and its partners. The Gillnet Tables contain data collected from the research vessel deploying various gear used for gillnet data collection. The database uses sample_type to indicate the gear deployed. The tables relating to Gillnet are: GN_Annulus.csv, GN_Catch.csv, GN_Effort.csv, GN_Fish.csv, GN_L, GN_LF.csv, GN_OP.csv, GN_Prey.csv, GN_Stomach.csv, LMMB_Fish_Prey.csv, and LMMB_Invert_Prey.csv Data Quality: Note that the following data release is a snapshot of the database at the time of release. Some data quality checks are still being...
This data set documents the dry mass energy density, distribution, and stomach contents of age-0 chum salmon (Oncorhynchus keta) captured in the Kuskokwim Bay estuary in May and June 2004. The analysis of this data was published in Burrill et al. 2018 (DOI :10.1007/s00300-018-2297-2.).
These data consist of a multi-trophic, day vs. night, nearshore to offshore transect approach for data collection for this Cooperative Science and Monitoring Initiative effort at two northwestern Lake Huron sites near Hammond Bay and Thunder Bay, Michigan. Zooplankton and Mysis samples were collected monthly from April-October while benthos and prey fish samples were collected seasonally during Spring, Summer, and Fall. Invertebrate taxa (zooplankton, Mysis, benthic macroinvertebrates) were identified, enumerated, and measured using a dissecting microscope. Diet items of the prey fish were processed similarly to the other samples in terms of taxonomy. These data were used to calculate densities of fish prey items...
These data consist of larval fish and water profile data collected with a nearshore to offshore transect approach at 9 transects throughout Lake Huron. Larval fish and their stomach contents were identified, enumerated, and measured (if possible) using a dissecting microscope. These data were used to calculate densities of potential fish prey items (what is available in the environment) and compare that to what the fishes ate for selectivity analysis. Larval fish age estimation based on daily growth rings from otoliths was also conducted. These data are in raw form. The water profile data were collected using a bathythermograph and bin-averaged at the 1 m level. Environmental prey data are available at the following...
This dataset describes mercury (Hg) stable isotope values in fish dorsal muscle from different freshwater environments across the globe. Fish were collected at numerous field sites in North America, South and Central America, Africa, and Asia from 2006-2020. Sub-samples were provided by cooperators to the U.S. Geological Survey Mercury Research Laboratory and the University of Wisconsin for mercury stable isotope analysis. Samples were analyzed for mercury stable isotopes from 2017-2021. These specimens represent multiple trophic levels and body sizes from different food webs and when adequate mass was available, multiple species from the same food web were examined. Cooperators include, but are not limited to:...
This data release includes mercury concentrations and mercury stable isotope measurements measured in sediments and biological tissues collected from the Saint Louis River located in Minnesota. Sediments and biota were collected by the U.S. Geological Survey, U.S. Environmental Protection Agency, U.S. Army Corps of Engineers, and federal contractors (Battelle) from 2017-2021. Collection regions included nearshore zones within the main estuary, remedial sites within the lower river, and upstream reservoir sites. Sediments were analyzed for total mercury, methylmercury, and mercury stable isotopes by the U.S. Geological Survey Mercury Research Laboratory (MRL, Madison, Wisconsin). Biological samples were analyzed...
Categories: Data;
Tags: Environmental Health,
Geochemistry,
Saint Louis River, Minnesota,
USGS Science Data Catalog (SDC),
biota,
All mensuration data represented here expand upon vessel operations (OP table) data, all of which are collected by the United States Geological Survey, Great Lakes Science Center and its partners. The Mensuration Tables contain data collected from the research vessel deploying various gear used for mensuration data collection. The database uses sample_type to indicate the gear deployed. The tables relating to Mensuration are: Mensuration.csv, MS_head_rope_depth.csv, MS_FOOT_ROPE_DEPTH, MS_Primary.csv, MS_Temperature.csv, and MS_Wingspread.csv Data Quality: Note that the following data release is a snapshot of the database at the time of release. Some data quality checks are still being undertaken after the time...
Description of Work USGS will conduct monthly samples of benthic invertebrates, zooplankton, and water quality as well as seasonal sampling of fish and fish diets. This project supports lower trophic sampling in Lake Erie and understanding food webs. An emphasis will be collecting samples from a nearshore to offshore design.
Categories: Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Accountability,
CSMI,
Ecosystem health,
Fish production,
Food Web,
This data release includes sampling location data, field-collected wetland attribute data, field-collected water chemistry data, laboratory-processed water chemistry data (anions, cations, alkalinity, nutrients, chlorophyll a concentrations, dissolved organic carbon, and specific ultraviolet absorbance, pesticide concentrations), dry mass of adult aquatic insects emerging from the surface of the wetlands, taxonomic classifications of the insects collected, and whole-body pesticide concentrations for adult aquatic insects emerging from wadeable wetlands in cropland and grassland landscapes across a salinity/hydrology gradient (N = 14 wetlands in 2015, N = 15 wetlands in 2016). Sampling was completed in late spring,...
All samples were collected within a 9km stretch of the Santa Fe River in northern Florida, USA. In 2019 and 2020 we sampled claw tissue from Macrochelys suwanniensis, Chelydra serpentina, and Trachemys scripta scripta, from three different sampling locations. We collected Vegetation and potential prey tissue samples within close proximity of turtle captures from two of the three capture locations. All tissues were used for stable carbon and nitrogen isotope analysis.
Categories: Data;
Tags: Ecology,
Florida,
Lower Suwannee,
USGS Science Data Catalog (SDC),
Wildlife Biology,
Stable isotope data of fauna, particulate organic matter, and rocks collected during the 2018 research cruise aboard the NOAA Ship Bell M. Shimada that examined benthic communities off the western U.S. coast.
Categories: Data;
Tags: Ecology,
Pacific Ocean,
USGS Science Data Catalog (SDC),
benthic ecosystems,
benthos,
Data to support the site characterization of locations sampled along the continental shelf and slope of the western U.S. coast off Washington, Oregon and California during the EXPRESS RL1905 expedition in 2019. Data consisted of tissue samples from fauna, sediments and particulate organic matter. These samples were analyzed for stable carbon and nitrogen isotopes to examine food web ecology. Additional observational data were collected through video analyses with efforts focused on documenting counts of fauna other than corals, sponges and fishes, as well as general habitat characteristics.
The dataset includes specifics on liver tissue and blood plasma anticoagulant rodenticide concentrations measured using high-performance liquid chromatography-tandem mass spectrometry. This data release supersedes Herring, G., and Eagles-Smith, C.A., 2022, Anticoagulant rodenticide concentrations in blood and tissue of California condors and turkey vultures: U.S. Geological Survey data release, https://doi.org/10.5066/P9NHPLHX. Please contact fresc_outreach@usgs.gov for access.
Categories: Data,
Data Release - Revised;
Tags: Arizona,
California,
California condor,
Ecology,
Oregon,
This data release includes sampling location data; field-collected stream attribute data; laboratory-analyzed chemistry concentrations (total mercury, methyl mercury) and isotopic composition (total mercury, carbon, and nitrogen) for stream biota (seston, periphyton, benthic insects, emerging adult insects, riparian spiders, and fish); density, body length, and taxonomic information for benthic insects; and density, biomass, and taxonomic information for emerging adult aquatic insects for biota sampled from stream reaches up and downstream of an historical mercury mine site. Sampling took place during summer low-flow conditions in 2015 and 2016. Stream reaches were located on USFS land near the Cinnabar Mine Site...
Methylmercury (MeHg) and total mercury (HgT) stable isotope measurements were made by the USGS Mercury Research Lab (MRL) in different organs on the Giant Petrels (Macronectes spp.) to examine internal mercury cycling in these seabirds. These data were collected as a compliment to x-ray spectroscopy measurements made by the University of Grenoble, France. The tissues and feathers of the southern giant petrels exhibit large variability in mercury-202 isotope values (δ202HgT), which are typically used to ascertain Hg sources in the environment. These values follow a pattern across all individuals based on tissue type: feathers (δ202HgT = 2.74 ± 0.16‰, n =5, mean ± standard deviation) > brain (δ202HgT = 1.09 ± 0.77‰,...
Categories: Data;
Tags: Antarctica,
Ecology,
Geochemistry,
Kerguelen Islands,
USGS Science Data Catalog (SDC),
In response to the rapidly evolving conditions at the Salton Sea with the emergence of both newly formed wetland habitat and increasing hazards to wildlife, the U.S. Bureau of Reclamation and U.S. Geological Survey have funded a re-evaluation of data gaps regarding selenium concentrations in biota the region. As part of this work, selenium concentrations in biological tissue samples were compiled from published reports, public databases, and unpublished archives into a tabulated spreadsheet. Since the California Department of Water Resources summarized selenium biological data in 2005, our compilation efforts focused on the 2005 through 2020 range. The resulting dataset encompasses all records available to us from...
Categories: Data;
Tags: California,
Salton Sea,
USGS Science Data Catalog (SDC),
Wildlife Biology,
bioaccumulation,
Terrain variables extracted from bathymetry were used in combination with stable isotope datasets to construct geospatially-explicit isoscapes that predicted variation in carbon and nitrogen isotopes across the canyon-slope seascape, providing insights into the distribution and flow of energy resources, relevant to understanding whole community function.
We propose a framework for hypothesis-testing of stable isotope ratios in ecological studies. Statistical procedures are based on analysis of nested linear models and a residual permutation procedure (RPP) that is employed to evaluate probabilities associated with test statistics. We used simulated examples and a real data set to illustrate the utility and generality of the method. First, we developed a test for differences in centroid location and dispersion of delta13C and delta15N values within and among groups of isotopic data. Second, we evaluated magnitude and direction of change in centroid position (termed "path") of a pair of isotopic samples separated in space/time relative to paths of other paired sample...
Categories: Publication;
Types: Citation,
Journal Citation;
Tags: ?13C,
?15N,
Ecology,
food web,
functional groups,
Spatial patterns of resource use by small-bodied fishes in the San Juan River were examined using stable isotopes. Using δ15N of fishes as an index of trophic position, our data suggest both native and non-native fishes primarily consumed macro-invertebrates. The δ13C of these fishes further suggested a detritus-based food web, from which most species fed on chironomids in low-velocity habitats. A two-way ANOVA revealed a significant interaction between trophic level of fish species and longitudinal position in the river. This interaction was primarily attributed to a decline in trophic level of non-native red shiner Cyprinella lutrensis, relative to other species, in upstream reaches of the river. In addition,...
Categories: Publication;
Types: Citation,
Journal Citation;
Tags: Environmental Biology of Fishes,
Springer Netherlands,
food web,
introduced species,
longitudinal gradients,
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