Filters: Tags: Landscape Genetics (X)
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Stream fragmentation alters the structure of aquatic communities on a global scale, generally through loss of native species. Among riverscapes in the Great Plains of North America, stream fragmentation and hydrologic alteration (flow regulation and dewatering) are implicated in the decline of native fish diversity. This study documents the spatio–temporal distribution of fish reproductive guilds in the fragmented Arkansas and Ninnescah rivers of south-central Kansas using retrospective analyses involving 63 years of fish community data. Pelagic-spawning fishes declined throughout the study area during 1950–2013, including Arkansas River shiner (Notropis girardi) last reported in 1983, plains minnow (Hybognathus...
Categories: Data,
Publication;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: CATFISHES/MINNOWS,
Colorado,
Colorado,
FISH,
Federal resource managers,
Genetic, demographic, and environmental processes affect natural populations synergistically, and understanding their interplay is crucial for the conservation of biodiversity. Stream fishes in metapopulations are particularly sensitive to habitat fragmentation because persistence depends on dispersal and colonization of new habitat but dispersal is constrained to stream networks. Great Plains streams are increasingly fragmented by water diversion and climate change, threatening connectivity of fish populations in this ecosystem. We used seven microsatellite loci to describe population and landscape genetic patterns across 614 individuals from 12 remaining populations of Arkansas darter ( Etheostoma cragini) in...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: CATFISHES/MINNOWS,
Climate Change,
Colorado,
Colorado,
Data,
Within grassland communities of the GPLCC one such key indicator species is the Lesser Prairie-chicken (Tympanuchus pallidinctus). Lesser Prairie-chicken range extends across the southern portion of the GPLCC area throughout Texas, Oklahoma, New Mexico, and Kansas. Lesser Prairie-chickens are a good target species because they are widely distributed across the southern GPLCC, are a species of conservation concern, have large home ranges, and are likely sensitive to anthropogenic disturbances. Similarly, the Greater Prairie-chicken (Tympanuchus cupido), is a species of conservation concern, with large home range, distributed across the northern portion of the GPLCC including portions of Oklahoma, Kansas, Nebraska,...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: BIRDS,
Climate Change,
Federal resource managers,
Final Report,
GPLCC,
Biodiversity in stream networks is threatened globally by interactions between habitat fragmentation and altered hydrologic regimes. In the Great Plains of North America, stream networks are fragmented by 19,000 anthropogenic barriers, and flow regimes are altered by surface water retention and groundwater extraction. We documented the distribution of anthropogenic barriers and dry stream segments in five basins covering the central Great Plains to assess effects of broad-scale environmental change on stream fish community structure and distribution of reproductive guilds. We used an information-theoretic approach to rank competing models in which fragmentation, discharge magnitude, and percentage of time streams had...
Categories: Data,
Publication;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: CATFISHES/MINNOWS,
Colorado,
Colorado,
FISH,
Federal resource managers,
Genetic, demographic, and environmental processes affect natural populations synergistically, and understanding their interplay is crucial for the conservation of biodiversity. Stream fishes in metapopulations are particularly sensitive to habitat fragmentation because persistence depends on dispersal and colonization of new habitat but dispersal is constrained to stream networks. Great Plains streams are increasingly fragmented by water diversion and climate change, threatening connectivity of fish populations in this ecosystem. We used seven microsatellite loci to describe population and landscape genetic patterns across 614 individuals from 12 remaining populations of Arkansas darter ( Etheostoma cragini) in...
Categories: Data,
Publication;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Climate Change,
Colorado,
Colorado,
Fisheries Management,
GPLCC,
Biodiversity in stream networks is threatened globally by interactions between habitat fragmentation and altered hydrologic regimes. In the Great Plains of North America, stream networks are fragmented by 19,000 anthropogenic barriers, and flow regimes are altered by surface water retention and groundwater extraction. We documented the distribution of anthropogenic barriers and dry stream segments in five basins covering the central Great Plains to assess effects of broad-scale environmental change on stream fish community structure and distribution of reproductive guilds. We used an information theoretic approach to rank competing models in which fragmentation, discharge magnitude, and percentage of time streams...
Categories: Data,
Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: 2012,
CATFISHES/MINNOWS,
CO-01,
CO-02,
CO-03,
Genetic, demographic, and environmental processes affect natural populations synergistically, and understanding their interplay is crucial for the conservation of biodiversity. Stream fishes in metapopulations are particularly sensitive to habitat fragmentation because persistence depends on dispersal and colonization of new habitat but dispersal is constrained to stream networks. Great Plains streams are increasingly fragmented by water diversion and climate change, threatening connectivity of fish populations in this ecosystem. We used seven microsatellite loci to describe population and landscape genetic patterns across 614 individuals from 12 remaining populations of Arkansas darter ( Etheostoma cragini) in...
Categories: Data,
Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: 2010,
CATFISHES/MINNOWS,
CO-03,
CO-04,
Climate Change,
Synopsis: This paper aimed to quantify the relative importance of habitat area and configuration, as well as the contrast in resistance between habitat and non-habitat, on genetic differentiation patterns. Using spatially explicit, individual-based simulation modeling, researchers found that habitat configuration had stronger relationships with genetic differentiation than did habitat area. The pattern of habitat in a landscape will affect the distribution of the population and the degree of connectivity across it, resulting in differential patterns of gene flow. Researchers also evaluated the predictive ability of six widely used landscape metrics and found that patch cohesion and correlation length of habitat...
Categories: Publication;
Types: Citation;
Tags: Landscape fragmentation,
Natural cover amount,
area,
configuration,
configuration,
Understanding the distribution and gaps in distribution for invertebrates that serve as prey items for waterbirds in the Great Basin is proving to be a successful way of understanding how prey availability may change as climate-induced changes to salinity in wetlands vary across the Great Basin. The molecular work for this project is coupled with a concurrent study of Great Basin wetlands, water chemistry, climate models, and waterbird use of the area to provide a robust picture of current and future conditions.
Habitat fragmentation and degradation impacts an organism's ability to navigate the landscape, ultimately resulting in decreased gene flow and increased extinction risk. Understanding how landscape composition impacts gene flow (i.e., connectivity) and interacts with scale is essential to conservation decision-making. We used a landscape genetics approach implementing a recently developed statistical model based on the generalized Wishart probability distribution to identify the primary landscape features affecting gene flow and estimate the degree to which each component influences connectivity for Gunnison sage-grouse (Centrocercus minimus). We were interested in two spatial scales: among distinct populations...
We used comparative landscape genetics to examine the relative roles of historical events, intrinsic traits and landscape factors in determining the distribution of genetic diversity of river fishes across the North American Great Plains. Spatial patterns of diversity were overlaid on a patch-based graphical model and then compared within and among three species that co-occurred across five Great Plains watersheds. Species differing in reproductive strategy (benthic vs. pelagic-spawning) were hypothesized to have different patterns of genetic diversity, but the overriding factor shaping contemporary patterns of diversity was the signature of past climates and geological history. Allelic diversity was significantly...
Categories: Data,
Publication;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: CATFISHES/MINNOWS,
Colorado,
Colorado,
FISH,
Federal resource managers,
The black‐tailed prairie dog (Cynomys ludovicianus) is considered an indicator species for the short grass prairie of North America; however, this species currently occupies an estimated 2% of its original distribution. Persistent and pervasive poisoning, and sylvatic plague have fragmented the remaining populations. It is not well understood how these population fragments are connected in a heterogeneous landscape of land use practices and land cover types, but quantifying population isolation and individual measures of dispersal across the landscape are essential to predicting both the vulnerability of extinction due to stochastic processes and the probability of disease emergence. To better understand how land...
Categories: Data,
Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: 2011,
BTPD,
BTPD,
Black-tailed Prairie Dog (Cynomys ludovicianus),
Black-tailed Prairie Dog (Cynomys ludovicianus),
On a global scale biodiversity within river networks is threatened by interactions between habitat fragmentation and altered hydrologic regimes. In the Great Plains of North America, stream networks are fragmented by >19,000 anthropogenic barriers and flow regimes are altered by surface water retention and groundwater extraction. We documented the distribution of anthropogenic barriers and dry stream segments in five basins covering the central Great Plains to assess effects of broad-scale environmental change on stream fish community structure, distribution of reproductive guilds, and genetic integrity of select populations. We used an information-theoretic approach to rank competing models involving fragmentation,...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: CATFISHES/MINNOWS,
Colorado,
Colorado,
FISH,
Federal resource managers,
Functional connectivity, quantified using landscape genetics, can inform conservation through the identification of factors linking genetic structure to landscape mechanisms. We used breeding habitat metrics, landscape attributes, and indices of grouse abundance, to compare fit between structural connectivity and genetic differentiation within five long-established Sage-Grouse Management Zones (MZ) I–V using microsatellite genotypes from 6,009 greater sage-grouse (Centrocercus urophasianus) collected across their range. We estimated structural connectivity using a circuit theory-based approach where we built resistance surfaces using thresholds dividing the landscape into “habitat” and “nonhabitat” and nodes were...
Categories: Data,
Data Release - Revised;
Tags: USGS Science Data Catalog (SDC),
Western North America,
biota,
landscape genetics
Microsatellite genotypes for American black bears collected by Gould et al. 2002 and used to assess the genetic structure of American black bear populations in the American Southwest and northern Mexico. Genotypes are for Ursus americanus individuals.
Categories: Data;
Tags: American Southwest,
American black bear,
Arizona,
Coahuila de Zaragoza,
Colorado,
The data are included in 8 separate text files: 1) "Sample_coordinates.txt". The file contains sample identifiers along with geographic coordinates associated with each sample. Coordinates are specified as UTM Zone 10 values (WGS84). 2) "Sample_genotypes.txt". The file contains a sample identifier along with microsatellite genotypes associated with each sample. 3) "uniform_conductances.asc". An ASCII text-based representation of a map containing idealized habitat for Northern Spotted Owls. 4) "1870_conductance.asc". An ASCII text-based representation of a map containing idealized habitat for Northern Spotted Owls in the 1870's. 5) "1940_conductance.asc". An ASCII text-based representation of a map containing idealized...
Landscape features such as mountains, rivers, and ecological gradients may strongly affect patterns of dispersal and gene flow among populations and thereby shape population dynamics and evolutionary trajectories. The landscape may have a particularly strong effect on patterns of dispersal and gene flow in amphibians because amphibians are thought to have poor dispersal abilities. We examined genetic variation at six microsatellite loci in Columbia spotted frogs (Rana luteiventris) from 28 breeding ponds in western Montana and Idaho, USA, in order to investigate the effects of landscape structure on patterns of gene flow. We were particularly interested in addressing three questions: (i) do ridges act as barriers...
Categories: Publication;
Types: Citation,
Journal Citation;
Tags: Columbia spotted frog,
Molecular Ecology,
Rana luteiventris,
dispersal,
effective population size,
Data used to generate figure 2 A for the cited paper. Sequence divergence was calculated as DA, Neiâs net number of nucleotide differences between each pair of collection locations, where the average number of differences between individuals among locations is corrected for the average number of differences within each location [61]. For datasets where multiple loci were sequenced, pairwise distances were averaged across loci after normalization.
The southeastern United States is a recognized hotspot of biodiversity for a variety of aquatic taxa, including fish, amphibians, and mollusks. Unfortunately, the great diversity of the area is accompanied by a large proportion of species at risk of extinction. Gap analysis was employed to assess the representation of evolutionary hotspots in protected lands where an evolutionary hotspot was defined as an area with high evolutionary potential and measured by atypical patterns of genetic divergence, genetic diversity, and to a lesser extent genetic similarity across multiple terrestrial or aquatic taxa. A survey of the primary literature produced 16 terrestrial and 14 aquatic genetic datasets for estimation of genetic...
Summary of project, results, and recommendations for the project completed by Sarah W. Fitzpatrick, Harry J. Crockett, and W. Chris Funk. Summary written by the Great Plains Landscape Conservation Cooperative (GP LCC).
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: CATFISHES/MINNOWS,
Climate Change,
Colorado,
Colorado,
Fisheries Management,
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