Filters: Tags: Population genetics (X)
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A central question of invasion biology is how an exotic species invades new habitats following its initial establishment. Three hypotheses to explain this expansion are: (1) the existence of ‘general purpose’ genotypes, (2) the in situ evolution of novel genotypes, and (3) the dispersal of existing specialized genotypes into habitats for which they are pre-adapted. Bromus tectorum is a selfing exotic winter annual grass that has achieved widespread dominance in semiarid western North America and that is actively invading salt desert habitats. We examined mechanisms driving this invasion in three complementary studies. In reciprocal seeding experiments with ten populations from saline playa, salt desert shrubland,...
Categories: Publication;
Types: Citation,
Journal Citation;
Tags: Evolutionary Ecology,
SSR marker,
cheatgrass,
downy brome,
invasion,
Fragment data from 11 nuclear microsatellite loci and sequence data from the mitochondrial cytochrome b gene were gathered from Arctic cod (Boreogadus saida) in the Beaufort and Chukchi seas. Mitogenomic analyses of Arctic cod and three other co-distributed gadoids (Polar cod [Arctogadus glacialis], Saffron cod [Eleginus gracilis], Walleye Pollock [Gadus chalcogrammus]) were also completed. Transcriptomic analyses of Arctic cod were used to identify genes associated with environmental perturbations. Genome-wide scans using RAD-Seq of Arctic cod and the co-distributed Polar Cod were collected.
Categories: Data;
Tags: Alaska,
Aleutian Islands,
Aquatic Biology,
Aquatic ecosystems,
Aquatic sciences,
This data set describes nuclear microsatellite genotypes derived from six autosomal loci (AgCA222, Age7.1JT, BV13, BV20, NVH206, NVH195-2) in Cooper's Hawks. Samples originated from blood samples collected from live trapped birds. Version History: First release: December 2020 Revised: February 2022 (ver. 2.0)
Categories: Data,
Data Release - Revised;
Tags: Accipiter cooperii,
AgCA222,
Age7.1JT,
Alleles,
Animals/Vertebrates,
These are genetic data collected from replicated samples of 21 Enteroctopus (E. dofleini or a cryptic lineage) in Prince William Sound Alaska to evaluate tissue type, DNA extraction method, and time until analyses are completed on data reliability. Data collected from all samples include two microsatellites identified as possible lineage indicators, and nine microsatellite loci previously identified as polymorphic in both lineages. DNA sequence data from 528 bp of the octopine dehydrogenase (OCDE) gene were also collected.
Categories: Data;
Tags: Alaska,
Amino Acid Oxidoreductases,
Animals/Invertebrates,
Biodiversity,
Biodiversity,
This data set contains genetic information collected from eelgrass (Zostera marina) populations along the Pacific coast of North America from Alaska to Baha California. A total of 447 samples were collected comprising 401 unique individuals (genets) and 46 clones (ramets) from which 10 microsatellite DNA loci were obtained.
Categories: Data;
Types: Citation;
Tags: Alleles,
Angiosperms (Flowering Plants),
Aquatic Biology,
Aquatic ecosystems,
Bahia Magdelena,
Genetic diversity levels, effective population size estimates, and population structure of the endangered Hawaiian hoary bat (Lasiurus semotus, also known as Aeorestes semotus) were examined across the islands of Hawai‘i, Maui, O‘ahu, and Kaua‘i using eighteen nuclear microsatellite loci and one mitochondrial gene from 339 individuals collected between 1988 and 2020. The study extracted DNA for population genetic analyses from tissue samples, collected from live bats captured as part of ongoing field studies or under rehabilitation care, from bat carcasses collected by local federal and state wildlife agencies and wind energy facilities, and from dried skin specimens at the Bernice Pauahi Bishop Museum. Eighteen...
Population genetic structure of boreal toad (Bufo boreas boreas) in Utah: A basis for defining units of conservation, credited to Hogrefe, Todd C, published in 2001.
Categories: Publication;
Types: Citation,
Thesis Citation;
Tags: Boreal toad,
Conservation biology,
Population genetics
This data set provides sample information, microsatellite genotype, and NCBI accession numbers for mitochondrial DNA sequences of peregrine falcons (Falco peregrinus) from North America and Russia. Version History: First release: January 2020 Revised: June 2022 (ver. 2.0)
Categories: Data,
Data Release - Revised;
Tags: Alaska,
Alberta,
Alleles,
Animals/Vertebrates,
Biodiversity,
This dataset contains sampling information and genetic data of 12 novel microsatellite loci developed and polymorphic in the Sea Sandwort (Honckenya peploides) and screened in Merckia (Wilhelmsia physodes) from Alaska. The allele sizes for the 12 microsatellite loci developed in this study are included for two populations of Sea Sandwort (Fossil Beach, Kodiak and Egg Bay, Atka) and one population of Merckia (upper Coleen River, Brooks Range).
Categories: Data;
Tags: Alaska,
Aleutian Islands,
Angiosperms (Flowering Plants),
Biogeography,
Biota,
These data are comprised of two tables, one table containing wolverine (Gulo gulo) sample and genetic information for 20 microsatellite loci (Gg10-1, Gg25, Gg37-2, Gg42-1, Gg192-1, Gg443, Gg452, Gg454, Gg465, Gg471, Gg473, Gg-3-1, Gg-4, Gg-7-1, Ggu_216-1, Lut604, Ma-3-1, Mvis075, Tt-1, and Tt-4) and genetic sex determination results from North America and one Russian wolverine. All samples were obtained from collections at the University of Alaska Museum of the North or the University of New Mexico’s Museum of Southwestern Biology. The second table provides complete primer information for the genetic markers since several were redesigned from their originally-published sequences for this study.
This data set describes nuclear microsatellite genotypes derived from eight autosomal loci (Aph02, Aph11, Aalµ1, Sfiµ4, Smo4, Smo7, Smo12, and Sfiµ8) and accession numbers for double digest restriction-site associated DNA (ddRAD) sequences.
This data package is comprised of three tables with data from wintering Harlequin Ducks (Histrionicus histrionicus) from Alaska, British Columbia, Washington, Maine, Greenland, and Iceland. The first table contains available allele sizes for 7 microsatellite loci (Sfiµ1, Sfiµ4, Sfiµ9, Sfiµ10, Bcaµ10, Hhiµ2, Hhiµ5) and mtDNA control region haplotypes. The second table contains the mtDNA control region sequences used to assign haplotypes. The third table provides the geographic locations of sampling sites.
These are genetic data collected from over 700 individual coho salmon (Oncorhynchus kisutch) from 17 streams and rivers within Glacier Bay Alaska and 2 rivers outside the bay. Data collected from all samples include one nuclear gene intron, Growth Hormone-1, and eight microsatellite loci.
Categories: Data;
Tags: Alaska,
Animals/Vertebrates,
Aquatic Biology,
Aquatic ecosystems,
Aquatic sciences,
These data were compiled to investigate the evolutionary history of Hilaria jamesii, Hilaria mutica, and Hilaria rigida. The data release consists of two tab delimited text files that may be used to infer population structure (viva_structure.stru) or relationships among sampling localities (viva.phylip). Files record genetic variation on an individual (.stru) or sampling locality (.phylip) level. These files may be opened and edited in a text editor program, such as Notepad ++ (PC) or BBEdit (Mac). The .phylip file can be uploaded to phyML or SVDQuartets to generate a tree-based visualization of relationships ( http://www.atgc-montpellier.fr/phyml/ or https://paup.phylosolutions.com, repectively). The .stru file...
This data set describes nuclear microsatellite genotypes derived from eight autosomal loci (BCA6, BCA9, BCA11, BCA5, CRG, OXY13, TSP1.20.09 and TSP1.20.46) and a 366 base pair portion of the mitochondrial control region. A total of 665 Greater White-fronted Geese were examined by genotyping and 518 by sequencing with samples coming from its circumpolar range representing multiple flyways (Midcontinent, Pacific, Greenland, Palearctic). The sex of most samples was determined in the field by morphology or cloacal examination. Version History: First release: June 2018 Revised: July 2018 (ver. 2.0)
Categories: Data,
Data Release - Revised;
Tags: Alaska,
Alleles,
Anadyr,
Anderson River,
Animals/vertebrates,
This data package is comprised of one table with genetic data from Brant (Branta bernicla). Data include sampling location and allele sizes of 14 microsatellite loci.
This data set contains allele sizes for 8 previously published and 16 novel microsatellite loci, and one microsatellite redesigned for amplification in Merlins (Falco columarius) associated with circadian clock control and polymorphism that has been associated with juvenile dispersal and migratory behavior in some avian species for Merlin (Falco columbarius) from North America (n=21). Allele sizes for the 16 microsatellite loci developed in this study are included for 12 Gyrfalcons (F. rusticolus) and 13 Peregrine Falcons (F. peregrinus). Additional population level data for Merlins and mtDNA will be added to this data release in the future.
This data set provides sample data and NCBI accession information for genomic sequencing of ptarmigan and grouse from Alaska. Version History: First release: July 2020 Revised: December 2021 (ver. 2.0)
Categories: Data,
Data Release - Revised;
Tags: Alaska,
Animals/Vertebrates,
Biota,
Birds,
Bonasa umbellus,
This data set is comprised of one table with Steller's Eider sample information and allele sizes for 6 microsatellite loci (Sfiµ3, Sfiµ4, Sfiµ10, Sfiµ11, Bcaµ11, Smo10).
Gene flow and potential for Sin Nombre virus (SNV) trafficking of the deer mouse (Peromyscus maniculatus) was studied in Delta and Mesa counties of western Colorado (USA). The study areas included Grand Mesa and surrounding grazing and agricultural areas. This area has several natural potential barriers to rodent gene flow, including rivers, cliffs, and mountains. Ten study sites were utilized in a spatially nested design ranging from 0.65-81 km apart; four of these sites were at or near human hantavirus pulmonary syndrome (HPS) case-patient residences. One HPS case occurred on the north side of Grand Mesa in 1993; the other three (two confirmed, one presumptive) occurred on the south side of Grand Mesa between...
Categories: Publication;
Types: Citation,
Journal Citation;
Tags: Journal of Wildlife Diseases,
Peromyscus maniculatus,
Sin Nombre virus,
deer mouse,
hantavirus pulmonary syndrome,
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