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This product is the result of a comprehensive compilation of site-specific ground photographs taken where tectonic faulting and ground failure produced visible deformation that fractured and disturbed the ground surface. The resultant data is distributed as a tab-delimited text file. All post-earthquake photographs taken by investigators working for public agencies are in the public domain, including data that have been published in summary reports elsewhere.
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Hillshade of lidar-derived, bare earth digital elevation model, with 235-degree azimuth and 20-degree sun angle, 0.25m resolution, depicting earthquake effects following the August 24, 2014 South Napa Earthquake.
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Note: This dataset has been revised and superseded by version 2.0, available here: https://doi.org/10.5066/P90PG34S. Remote sensing based maps of tidal marshes, both of their extents and carbon stocks, have the potential to play a key role in conducting greenhouse gas inventories and implementing climate mitigation policies. Our objective was to generate a single remote sensing model of tidal marsh aboveground biomass and carbon that represents nationally diverse tidal marshes within the conterminous United States (CONUS). To meet this objective we developed the first national-scale dataset of aboveground tidal marsh biomass, species composition, and aboveground plant carbon content (%C) from six CONUS regions:...
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This product is the result of a comprehensive compilation of site-specific ground photographs taken where tectonic faulting and ground failure produced visible deformation that fractured and disturbed the ground surface. The resultant data is distributed as collection of JPEG image files. All post-earthquake photographs taken by investigators working for public agencies are in the public domain, including data that have been published in summary reports elsewhere. These photographs are best viewed in context with fault rupture and other observations from the related KMZ file of summary field observations and photographs (https://www.sciencebase.gov/catalog/item/5c1d7ae0e4b0708288ca1322), or from the associated open-file...
Although San Francisco Bay has a “Golden Gate”, it may be argued that it is the “Silver Estuary”. For at one time the Bay was reported to have the highest levels of silver in its sediments and biota, along with the only accurately measured values of silver in solution, of any estuarine system. Since then others have argued that silver contamination is higher elsewhere (e.g., New York Bight, Florida Bay, Galveston Bay) in a peculiar form of pollution machismo, while silver contamination has measurably declined in sediments, biota, and surface waters of the Bay over the past two to three decades. Documentation of those systemic temporal declines has been possible because of long-term, ongoing monitoring programs,...
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New active-source shallow seismic (shear-wave and acoustic-wave) measurements were obtained at 18 prioritized seismic monitoring station locations in the north San Francisco Bay area to measure site-specific ground motion amplification effects, soil depth, depth to bedrock (Z1.0 Vs=1 km/s), calculate site specific velocity-depth profiles and Vs30, and develop NEHRP site classifications for each location. This study was led by Principal Investigators Jamey Turner, Cooper Brossy, and Daniel O’Connell and field data were acquired by Glendon Adams and Lincoln Steele. Seismic monitoring sites that recorded high PGA values during the M6.0 Napa earthquake, proximal to higher population densities, and sites recommended...
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San Francisco Bay, California is considered a mercury-impaired watershed. Elevated concentrations of mercury are found in water and sediment as well as fish and estuarine birds. Sources of mercury to the watershed since 1845 include sediment-associated mercury from mercury mining, mercury losses from gold amalgamation activities in mines of the Sierra Nevada, aerial deposition of mercury from global and regional emissions to air, and the direct discharge of mercury to Bay waters associated with the urbanization and industrialization of the estuary. We assessed historical trends in mercury bioaccumulation by measuring mercury concentrations in feathers of the endangered California Ridgway’s rail (formerly California...
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As part of the hydrodynamic and sediment transport investigations in San Pablo Bay and China Camp Marsh, California, particle size distributions of bed sediments were measured at most instrumented stations and are presented in a comma-delimited values spreadsheet. This portion of the data release presents San Pablo Bay and China Camp Marsh sediment particle size distributions from samples collected during multiple instrument deployments. Users are advised to check the data carefully for sampling time, location, and reference information.
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Measurements of suspended sediment concentration, water velocity, suspended-sediment particle size, and suspended-sediment particle settling velocity were collected to estimate suspended-sediment flux and investigate sediment transport processes at Dumbarton Bridge in San Francisco Bay (NWIS station 373015122071000) from calendar year 2018 to 2019. Data were collected using: stationary and boat-mounted acoustic Doppler current meters (ADCP, a 1 MHz Nortek Aquadopp and a 1200kHz Teledyne RiverPro, respectively), four stationary and one profiling multiparameter water quality profiling sondes (YSI 6920), a stationary acoustic backscattering sensor (ABS, Sequoia LISST-ABS), a stationary laser diffraction particle size...
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The Hamilton Wetland Restoration Project (HWRP) is a joint venture between the US Army Corps of Engineers (USACE; San Francisco District) and the California State Coastal Conservancy. The site is located on the property of the former Hamilton Army Airfield in Novato, California, along the western edge of San Pablo Bay, which is part of northern San Francisco Bay. The initial stages of wetland restoration, which included dredged sediment reuse, took place during 2009–2011. From 2011 until April 2014, the site was maintained as partially flooded through a temporary one-way culvert that allowed bay water onto the site. On April 25th, 2014, the outboard levee towards the north-eastern corner of the site was breached...
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This U.S. Geological Survey Data Release contains the data and metadata associated with the journal article. Parental incubation behavior largely influences nest survival, a critical demographic process in avian population dynamics, and behaviors vary across species with different life history breeding strategies. Although research has identified nest survival advantages of mixing colonies, behavioral mechanisms that might explain these effects is largely lacking. We examined parental incubation behavior using video-monitoring techniques on Alcatraz Island, California, of black-crowned night-heron Nycticorax nycticorax (hereinafter, night-heron) in a mixed-species colony with California gulls Larus californicus...
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We conducted a multi-year study (2010–2012) to investigate diel patterns of specific incubation behaviors of nesting black-crowned night-herons Nycticorax nycticorax (hereinafter night-herons) on Alcatraz Island, California. This dataset includes hourly percentages of specific incubation behaviors (i.e. inactivity, vigilance, preening, and nest maintenance) from ~230 video-monitored nest days across 83 nests (18 in 2010, 30 in 2011, and 35 in 2012).
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Collection of low sun angle hillshade images of lidar-derived, bare earth digital elevation models, 0.25m resolution, that depict fault rupture and ground deformation features, collected following the August 24, 2014 South Napa Earthquake.
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Linework representing fault rupture and ground deformation features interpreted from airborne imagery, lidar, and InSAR interferograms, are combined with digitized field mapping into a single KMZ file.
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Benthic invertebrate communities are monitored because the composition of those communities can affect and be affected by the water quality of an aquatic system. Benthic communities use and sometimes regulate the cycling of essential elements (for example, carbon). Benthic invertebrate taxa may also indicate acute and chronic stressors in an environment because they accumulate contaminants and can respond – sometimes dramatically - to oligotrophic and eutrophic conditions. Benthic communities affect water quality by grazing pelagic food resources and increasing the rate of nutrient regeneration through feeding and bioturbating sediments. South San Francisco Bay is a system dependent on phytoplankton as the base...
A Gust erosion chamber was used to apply horizontal shear stress to sediment cores obtained from San Pablo and Grizzly (within Suisun) Bays in California. A pair of sediment cores were collected from the same approximate locations in each bay six times between June 12th, 2019 and August 15th, 2019 for a total of 12 experiments and 24 sediment core results. Locations were chosen to capture the benthic variability along the estuarine salinity gradient, are established benthic monitoring stations, proximity to historic/restored wetlands, and practicality for field operations. Sampling dates targeted spring and neap tide conditions. An onshore experiment was conducted on each core to apply shear stresses with stepwise...
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Note: This data release has been superseded by version 3.0, available here: https://doi.org/10.5066/P9Q2YP9K. The Hamilton Wetland Restoration Project (HWRP) is a joint venture between the US Army Corps of Engineers (USACE; San Francisco District) and the California State Coastal Conservancy. The site is located on the property of the former Hamilton Army Airfield in Novato, California, along the western edge of San Pablo Bay, which is part of northern San Francisco Bay. The initial stages of wetland restoration, which included dredged sediment reuse, took place during 2009–2011. From 2011 until April 2014, the site was maintained as partially flooded through a temporary one-way culvert that allowed bay water onto...
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Lidar-derived digital elevation models often contain a vertical bias due to vegetation. In areas with tidal influence the amount of bias can be ecologically significant, for example, by decreasing the expected inundation frequency. We generated a corrected digital elevation mode (DEM) for tidal marsh areas around San Francisco Bay using the Lidar Elevation Adjustment with NDVI (LEAN) technique (Buffington et al. 2016). Survey-grade GPS survey data (6614 points), NAIP-derived Normalized Difference Vegetation Index, and original 1 m lidar DEM from 2010 were used to generate a model of predicted bias across tidal marsh areas. The predicted bias was then subtracted from the original lidar DEM and merged with the NOAA...
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The goal of this study was to develop a suite of inter-related water quality monitoring approaches capable of modeling and estimating the spatial and temporal gradients of particulate and dissolved total mercury (THg) concentration and particulate and dissolved methyl mercury (MeHg) concentration in surface waters across the Sacramento / San Joaquin River Delta (SSJRD). This suite of monitoring approaches included: a) data collection at fixed continuous monitoring stations (CMS) outfitted with in-situ sensors, b) spatial mapping using boat-mounted, flow-through, sensors and c) satellite-based remote sensing. The focus of this specific Child Page is to present all data collected during the underway boat mapping component...


map background search result map search result map Historical methyl mercury in San Francisco Bay The Effects of Heterospecifics and Climatic Conditions on Incubation Behavior within a Mixed-Species Colony Black-crowned Night-Heron Incubation Time Budget Data from Alcatraz Island, 2010-2012 Photographs of fault rupture and ground deformation features produced by the Mw 6.0 South Napa earthquake of August 24, 2014 Airborne Lidar Hillshade Images Depicting Fault Rupture Produced by the Mw 6.0 South Napa Earthquake Hillshade raster (235-degree azimuth, 20-degree sun angle) derived from lidar data collected after the August 24, 2014 South Napa earthquake Tidal marsh biomass field plot and remote sensing datasets for six regions in the conterminous United States Sediment size distributions from San Pablo Bay and China Camp Marsh, California Benthic Community Dynamics in Coyote Creek and Artesian Slough, Southern San Francisco Bay, California, May 2016 to March 2018 LEAN-corrected San Francisco Bay Digital Elevation Model, 2018 KMZ file of fault rupture and ground deformation features produced by the Mw 6.0 South Napa Earthquake of August 24, 2014 Table of photograph metadata and links to full-resolution photographs taken at observation stations by post-earthquake reconnaissance teams, Mw 6.0 South Napa Earthquake of August 24, 2014 Sediment Concentration, Water Velocity, and Suspended Particle Size and Settling Data to Estimate Estuarine Sediment Flux at Dumbarton Bridge, San Francisco Bay, CA from 2018 - 2019 Flow through system (FTS) and spectral absorption / attenuation sensor (ACS) data from boat mapping transects within the Sacramento-San Joaquin River Delta Erodibility Data from Gust Erosion Chamber Experiments in Grizzly Bay and San Pablo Bay, California, Summer 2019 Mercury speciation and other constituent data for surface water and bed sediment associated with the Hamilton Airfield Wetland Restoration, Novato, California. USA (ver. 2.0, June 2021) Mercury speciation and other constituent data for surface water and bed sediment associated with the Hamilton Airfield Wetland Restoration, Novato, California. USA (ver. 4.0, March 2023) The Effects of Heterospecifics and Climatic Conditions on Incubation Behavior within a Mixed-Species Colony Black-crowned Night-Heron Incubation Time Budget Data from Alcatraz Island, 2010-2012 Sediment Concentration, Water Velocity, and Suspended Particle Size and Settling Data to Estimate Estuarine Sediment Flux at Dumbarton Bridge, San Francisco Bay, CA from 2018 - 2019 Mercury speciation and other constituent data for surface water and bed sediment associated with the Hamilton Airfield Wetland Restoration, Novato, California. USA (ver. 2.0, June 2021) Mercury speciation and other constituent data for surface water and bed sediment associated with the Hamilton Airfield Wetland Restoration, Novato, California. USA (ver. 4.0, March 2023) Sediment size distributions from San Pablo Bay and China Camp Marsh, California Erodibility Data from Gust Erosion Chamber Experiments in Grizzly Bay and San Pablo Bay, California, Summer 2019 Flow through system (FTS) and spectral absorption / attenuation sensor (ACS) data from boat mapping transects within the Sacramento-San Joaquin River Delta LEAN-corrected San Francisco Bay Digital Elevation Model, 2018 Historical methyl mercury in San Francisco Bay Tidal marsh biomass field plot and remote sensing datasets for six regions in the conterminous United States