Filters: Tags: San Francisco Bay-Delta (X)
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Field data for fishes sampled using mid-water trawls, otter trawls, and the SmeltCam during day and night in San Pablo Bay, CA. This data release includes all measured environmental parameters and fish taxa included in the analysis.
Categories: Data,
Data Release - Revised;
Tags: Aquatic Biology,
California,
Fish Ecology,
Longfin Smelt,
San Francisco Bay-Delta,
Field and laboratory data collected for fishes sampled by boat electrofishing in the Sacramento-San Joaquin delta, CA. This data release includes all measured environmental parameters, body composition analyses, otoliths, and fish taxa included in the analysis.
This dataset contains 212 samples from 8 Oenothera deltoides subsp. howellii occurrences, 3 occurrences of the unknown taxon- clade X, and 3 occurrences of related Oenothera deltoides subsp. cognata. Genomic markers were generated from ddRAD loci (Peterson and others, 2012) and analyzed using the Stacks v2.53 (Catchen and others, 2013) pipeline. The genotypes for all samples are provided in a VCF file with 2,693 independent loci and 15 percent missing data. A companion file is provided with sample names and occurrence designations. These files may be opened and edited in a text editor program, such as Notepad (PC) or BBEdit (Mac). The .vcf file can be loaded into the Stacks population program (Catchen and others,...
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