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USGS scientists often face computationally intensive tasks that require high-throughput computing capabilities. Several USGS facilities use HTCondor to run their computational pools but are not necessarily connected to the larger USGS pool. This project demonstrated how to connect HTCondor pools by flocking, or coordinating, within the USGS. In addition to flocking the Upper Midwest Environmental Science Center and the Wisconsin Water Science Center, we have flocked with the USGS Advanced Research Computing Yeti supercomputing cluster and other water science centers. We also developed tutorials on how to sandbox code using Docker within the USGS environment for use with high-throughput computing. A main accomplishment...
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Increasingly, USGS scientists seek to share and collaborate while working on data and code. Furthermore, these scientists often require advanced computing resources. Jupyter Notebooks are one such tool for creating these workflows. The files are interactive, code “notebooks” which allow users to combine code and text in one document, enabling scientists to share the stories held within their data. Recently, USGS launched an instance of Pangeo—a community platform for Big Data geoscience—as a tool for internally hosting and executing these notebooks. Few examples exist on how to use Pangeo and no formal documentation exists for USGS scientists to use Pangeo. We will create and curate examples of using Jupyter Notebooks...