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These data include a row for each duck nest equipped with a small video camera. We present the location of the nest, the timing of the start of hatch, the timing of the end of hatch, and the timing of the departure of the hen and ducklings from the nest. Additionally, this table includes any predators that were observed at the nest depredating eggs prior to hatch and any predators that were observed at the nest between hatch and departure from the nest. These data support the following publication: "Sitting ducklings: Timing of hatch, nest departure, and predation risk for dabbling duck broods" by Sarah H. Peterson, Joshua T. Ackerman, Mark P. Herzog, C. Alex Hartman, Rebecca Croston, Cliff L. Feldheim, and Michael...
We conducted a radio telemetry study of adult western spadefoots (Spea hammondii) at 2 sites in southern California to characterize their survival, behavior, and movements from breeding through aestivation to inform conservation and management for the species. These data support the following publication: Halstead, B.J., Baumberger, K.L., Backlin, A.R., Kleeman, P.M., Wong, M.N., Gallegos, E.A., Rose, J.P., and Fisher, R.N., 2021. Conservation implications of spatiotemporal variation in the terrestrial ecology of an ephemeral pool-breeding amphibian. The Journal of Wildlife Management.
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This dataset describes mesopredator locations (raccoons and striped skunks), dabbling duck nest locations (mallard, gadwall, and cinnamon teal), northern harrier nest locations, and random locations in relation to a set of habitat features in Suisun Marsh, California during 2016 through 2019. We designed a series of questions to link fine-scale predator movements and vulnerability of dabbling duck nests to predator encounters and egg predation. We conducted our study over a 4-year period using 41 GPS-collared raccoons and striped skunks, two of the most widespread mammalian predators of waterfowl eggs in North America, and more than 2000 monitored duck nests. Each night of movement for mesopredators contains the...
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These data represent trapping effort and captures of deer mice at Point Reyes National Seashore, Marin County, California. Deer mice were captured and marked with ear tags to allow identification of individuals. The location of captures can be used in a spatially explicit capture recapture model to estimate density of mice and how mouse density varies by site and habitat type.
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We used free-ranging northern elephant seals as a model species to investigate maternal transfer of mercury (Hg) to pups in relation to maternal traits, including maternal blood mercury concentrations, and to quantify the links between pup lanugo mercury concentrations and maternal mesopelagic foraging behavior during gestation. We satellite tracked known-age adult females at sea during their seven-month-long foraging trip to determine maternal foraging strategies (geographic locations and diving depths) and quantified mercury concentrations in maternal blood and their pups’ blood and lanugo (which is defined as pup hair grown in utero) early in lactation when seals were hauled out. We then tested how the maternal...
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These data represent an annotated training data for machine learned life history classification of the daily activity of dabbling ducks (f. Anatidae sf. Anatinae) using hourly GPS data. Each row of data represents a single GPS location for one of 5 species of dabbling duck. Note: the machine learned model was developed to be general across sf. Anatinae and does not include specific reference to the species included. That information is obtainable from the point of contact upon request. Each data record contains unique identifiers for individual bird, individual date of locations for an individual bird, and for individual location. Each record contains spatial, temporal and associated habitat information. Each record...
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We used a hierarchical Bayesian modeling framework to estimate resource selection functions and survival for early and late brood-rearing stages of sage-grouse in relation to a broad suite of habitat characteristics evaluated at multiple spatial scales within the Great Basin from 2009 to 2019. Sage-grouse selected for greater perennial grass cover, higher relative elevations, and areas closer to springs and wet meadows during both early and late brood-rearing. Terrain characteristics, including heat load and aspect, were important in survival models, as was variation in shrub height. We also found strong evidence for higher survival for both early and late broods within previously burned areas, but survival within...
This dataset contains mercury concentrations and locations of wintering red-legged kittiwakes in the western subartic Pacific Ocean. These data support the following publication: Fleishman, AB, RA Orben, N Kokubun, A Will, R Paredes, JT Ackerman, A Takahashi, AS Kitaysky, and SA Shaffer. 2019. Wintering in the Western Subarctic Pacific increases mercury contamination of red-legged kittiwakes. Environmental Science and Technology, in press.
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The dataset consists of two csv files one for adult snakes and one for captive-reared juvenile snakes. The data contains start times (when snakes entered the study) and end times (when snakes died or were censored from the study) for survival analysis. The data also contains general information about the individual snakes (id, snout-vent length, treatment group, whether or not they were translocated), sex (juveniles only since adults were all female), surface activity (and data needed to calculate surface activity), and average distance moved between telemetry resighting. The above information was used as covariates in the survival models. These data support the following publication: Nguyen, A.M., Todd, B.D....
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Data presented are results of vegetation sampling conducted in 2019-20 and 2023 in 24 survey plots to document the status of infestation by shot hole borers (Euwallacea sp.) on the riparian vegetation at the San Diego River. This dataset presents location, percent cover of different vegetation types, and number of seedlings for each survey plot. In addition, for each tree and sapling in each plot we present species, size, tree status (live, resprouting, recently dead from shot hole borer, or dead from another cause or unknown cause), infestation status (infested by shot hole borer, not infested by shot hole borer, or infestation not confirmed as shot hole borer), and crown condition. For every tree we also present...
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This dataset provides spatial predictions of habitat suitability for current (1950 – 2000 yr) and mid-Holocene (8.3 ka – 4.2 ka) intervals using hindcasting, and three separate paleo-distributions calibrated on the packrat midden archive: those without bias correction (naïve), those created with a standard method (standard), and those created with a novel alternative (modeled) incorporating a three-stage model of bias. The raster layers contained here accompany the manuscript Inman et al. 2018 and were used to evaluate utility of a novel bias correction method (modeled) over classic methods. Spatial predictions of habitat suitability were created using MaxEnt version 3.4.0 (Phillips et al., 2006), a widely-used...
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Identifying migration routes and fall stopover sites of cinnamon teal (Spatula cyanoptera septentrionalium) can provide a spatial guide to management and conservation efforts, and address vulnerabilities in wetland networks that support migratory waterbirds. Using high spatio-temporal resolution GSM-GPS transmitters, we tracked the fall migration of 61 cinnamon teal across western North America over three years (2017-2019). We marked cinnamon teal primarily during spring/summer in important breeding and molting regions across seven states (California, Oregon, Washington, Idaho, Utah, Colorado, and Nevada). We assessed migration routes and timing, detected 261 fall stopover sites, and identified specific ecoregions...
Observations (reduced to detected/not detected) of 45 vertebrate species (seven mammals, seven amphibians, and 31 reptiles) across Southern California pitfall sampling projects conducted between 1995 through 2015. Habitat patch locations of every pitfall sampling project presented in a shapefile. Habitat patches were measured based on the size when pitfall sampling began within each. Sampling projects within the same geographic area may have different sized patches based on date of project sampling and if patch erosion occurred. A matrix of whether each species was expected within each habitat patch's species pool based on range maps and published records is also included. These data support the following publication:...
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Conversion and fragmentation of wildlife habitat often leads to smaller and isolated populations and can reduce a species’ ability to disperse across the landscape. As a consequence, genetic drift can quickly lower genetic variation and increase vulnerability to extirpation. For species of conservation concern, quantification of population size and connectivity can clarify the influence of genetic drift in local populations and provides important information for conservation management and recovery strategies. Here, we used genome-wide single nucleotide polymorphism (SNP) data and capture-mark-recapture methods to evaluate the population structure, genetic diversity and abundance of seven focal sites of the endangered...
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Technological advancements in Global Positioning System (GPS) telemetry markers allow almost real-time observation of waterfowl movements and habitat selection. Telemetry data on ducks marked with GPS transmitters can be used to evaluate performance of remote sensing data (for example, dynamic open-water maps produced by Point Blue Conservation Science) for classifying habitats that are flooded and available for waterfowl. Translating dynamic open-water maps to waterfowl-relevant habitat maps provides a major improvement for wildlife researchers and managers to assist in their assessments of the areas and habitats used by waterfowl as hydrologic conditions change, both temporally and spatially. Suitable habitat...
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We examined nest survival of Greater Sage-grouse (Centrocercus urophasianus; hereafter, sage-grouse) in relation to fine-scale habitat patterns that influenced nest site selection, using data from nests of telemetered females at 17 sites across 6 years in Nevada and northeastern California, USA. Importantly, sites spanned mesic and xeric average precipitation conditions and concomitant vegetation community structure across cold desert ecosystems of the North American Great Basin. Vegetative cover immediately surrounding sage-grouse nests was important for both nest site selection and nest survival, but responses varied between mesic and xeric sites. For example, while taller perennial grass was selected at xeric...
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A study comparing reintroduction scenarios for the San Francisco gartersnake (Thamnophis sirtalis tetrataenia), an endangered subspecies native to San Mateo County and Santa Cruz County in northern California. Models for snake survival, growth, fecundity, and reproductive status were used to construct a demographic population model. Data are posterior distributions for demographic parameters from Markov Chain Monte Carlo sampling in hierarchical Bayesian models. These data support the following publication: Rose, J.P., Kim, R., Schoening, E.J., Lien, P.C., and Halstead, B.J., 2023. Comparing reintroduction strategies for the endangered San Francisco gartersnake (Thamnophis sirtalis tetrataenia) using demographic...
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This data relase is a product of Atlas of Breeding Seabirds of the Main Hawaiian Islands Kīlauea Point National Wildlife Refuge (KPNWR) is an important seabird breeding site located at the northeastern tip of Kauaʻi in the main Hawaiian Islands (MHI). Despite the regional significance of KPNWR as one of the most important breeding sites for Red-tailed Tropicbirds (Phaethon rubricauda), Red-footed Boobies (Sula sula), and Wedge-tailed Shearwaters (Ardenna pacifica) in MHI, robust and accurate population surveys have not been consistently conducted and recent information is lacking. In this study, we completed comprehensive population surveys for these three species during the 2019 breeding season. Using direct censusing...
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These data represent predicted common raven (Corvus corax) density (ravens/square-km) derived from random forest models given field site unit-specific estimates of raven density that were obtained from hierarchical distance sampling models at 43 field site units within the Great Basin region, USA. Fifteen landscape-level predictors summarizing climate, vegetation, topography and anthropogenic footprint were used to predict average raven density at each unit. A raven density of greater than or equal to 0.40 ravens/square-km corresponds to below-average survival rates of sage-grouse (Centrocercus urophasianus) nests. We mapped areas which exceed this threshold within sage-grouse concentration areas to determine where...
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The dataset includes three separate excel spreadsheets which provides waterbird (and predator) observations within individual survey units during the May 2019 breeding waterbird survey of south San Francisco Bay (2019WaterbirdSurveyFullData.xlsx), the total number of American avocets, black-necked stilts, and Forster's terns within each pond unit surveyed during the May 2019 survey (2019WaterbirdSurveyPondModel.xlsx), and the annual total number of nests for American avocets, black-necked stilts, and Forster's terns in south San Francisco between 2005 and 2019 (SouthBayWaterbirdNests2005-2019.xlsx). These data support the following publication: Hartman, C.A., Ackerman, J.T., Schacter, C.R., Herzog, M.P., Tarjan,...
map background search result map search result map Spatial predictions of habitat suitability for present-day (1950 – 2000 yr) and mid-Holocene (8.3 ka – 4.2 ka) time intervals The timing of dabbling duckling hatch, nest departure and depredation in Suisun Marsh, California from 2015-2017 Data Maps of Predicted Raven Density and Areas of Potential Impact to Nesting Sage-grouse within Sagebrush Ecosystems of the North American Great Basin Population Estimates for Selected Breeding Seabirds at Kīlauea Point National Wildlife Refuge, Kauaʻi, in 2019 Species Observations from Pitfall Trap Arrays, Species Pool Matrices, and Patch Locations in Southern California from 1995-2015 Classification of Waterfowl Habitat, and Quantification of Interannual Space Use and Movement Distance from Primary Roosts to Night Feeding Locations by Waterfowl in California for October - March of 2015 through 2018 Breeding Waterbird Populations in South San Francisco Bay 2005-2019 Western Spadefoot Habitat Selection Based on Radio Telemetry in Orange County, California 2019 Migration stopover ecology of cinnamon teal in western North America San Francisco Gartersnake (Thamnophis sirtalis tetrataenia) Genomic and Demographic Data from San Mateo County and Northeastern Santa Cruz County Collected Between 2016 - 2018 Predator Movements and Duck Nests in Relation to Habitat Features in Suisun Marsh, CA (2016-2019) Spatially-Explicit Predictive Maps of Greater Sage-Grouse Brood Selection Integrated with Brood Survival in Nevada and Northeastern California, USA Hourly GPS Locations, Associated Habitat Condition, and Annotated Life History State for Training Machine Learned Models of Waterfowl Daily Activity Microhabitat Characteristics Influencing Sage-Grouse Nest Site Selection and Survival, Nevada and California (2012-2017) Survival Data for Translocated Adults and Captive-Reared Juvenile Giant Gartersnakes in Sacramento County, California (2018-2021) Demographic Parameter Estimates for San Francisco Gartersnakes (Thamnophis sirtalis tetrataenia) for Fitting an Integral Projection Model Captures and Trapping Effort for Deer Mice (Peromyscus sonoriensis) at Point Reyes National Seashore, California, USA from 2021 to 2022 Maternal Transfer of Mercury to Northern Elephant Seal Pups Population Estimates for Selected Breeding Seabirds at Kīlauea Point National Wildlife Refuge, Kauaʻi, in 2019 Survival Data for Translocated Adults and Captive-Reared Juvenile Giant Gartersnakes in Sacramento County, California (2018-2021) The timing of dabbling duckling hatch, nest departure and depredation in Suisun Marsh, California from 2015-2017 Captures and Trapping Effort for Deer Mice (Peromyscus sonoriensis) at Point Reyes National Seashore, California, USA from 2021 to 2022 Breeding Waterbird Populations in South San Francisco Bay 2005-2019 Predator Movements and Duck Nests in Relation to Habitat Features in Suisun Marsh, CA (2016-2019) Western Spadefoot Habitat Selection Based on Radio Telemetry in Orange County, California 2019 Species Observations from Pitfall Trap Arrays, Species Pool Matrices, and Patch Locations in Southern California from 1995-2015 Classification of Waterfowl Habitat, and Quantification of Interannual Space Use and Movement Distance from Primary Roosts to Night Feeding Locations by Waterfowl in California for October - March of 2015 through 2018 San Francisco Gartersnake (Thamnophis sirtalis tetrataenia) Genomic and Demographic Data from San Mateo County and Northeastern Santa Cruz County Collected Between 2016 - 2018 Spatially-Explicit Predictive Maps of Greater Sage-Grouse Brood Selection Integrated with Brood Survival in Nevada and Northeastern California, USA Microhabitat Characteristics Influencing Sage-Grouse Nest Site Selection and Survival, Nevada and California (2012-2017) Data Maps of Predicted Raven Density and Areas of Potential Impact to Nesting Sage-grouse within Sagebrush Ecosystems of the North American Great Basin Migration stopover ecology of cinnamon teal in western North America Spatial predictions of habitat suitability for present-day (1950 – 2000 yr) and mid-Holocene (8.3 ka – 4.2 ka) time intervals Hourly GPS Locations, Associated Habitat Condition, and Annotated Life History State for Training Machine Learned Models of Waterfowl Daily Activity Maternal Transfer of Mercury to Northern Elephant Seal Pups