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Natural cave passages penetrating a coastal aquifer in the Yucatan Peninsula (Mexico) were accessed to test the hypothesis that chemoclines associated with salinity gradients (haloclines) within the flooded cave networks of the karst subterranean estuary are sites of methane oxidation. Two field trips were carried out to the fully-submerged cave system located 6.6 km inland from the coastline in January 2015 and January 2016. Vertical chemical profiles across the water column haloclines were obtained using the OctoPiPi (OPP), a high-resolution water sampler built by the U.S. Geological Survey (USGS). The sampling efforts resulted in cm-scale profiles of major ions (e.g., chloride and sulfate), as well as concentrations...
The accretion history of fringing salt marshes located on the south shore of Cape Cod is reconstructed from sediment cores collected in low and high marsh vegetation zones. These marshes are micro-tidal, with a mean tidal range of 0.442 m. Their location within protected embayments and the absence of large rivers results in minimal sediment supply and a dominance of organic matter contributions to sediment peat. Age models based on 210-lead and 137-cesium are constructed to evaluate how vertical accretion and carbon burial rates have changed over the past century. The continuous rate of supply age model was used to age date 11 cores (10 low marsh and 1 high marsh) across four salt marshes. Both vertical accretion...
Categories: Data;
Tags: 137-cesium,
210-lead,
Barnstable County,
Cape Cod,
Commonwealth of Massachusetts,
The Hamilton Wetland Restoration Project (HWRP) is a joint venture between the US Army Corps of Engineers (USACE; San Francisco District) and the California State Coastal Conservancy. The site is located on the property of the former Hamilton Army Airfield in Novato, California, along the western edge of San Pablo Bay, which is part of northern San Francisco Bay. The initial stages of wetland restoration, which included dredged sediment reuse, took place during 2009–2011. From 2011 until April 2014, the site was maintained as partially flooded through a temporary one-way culvert that allowed bay water onto the site. On April 25th, 2014, the outboard levee towards the north-eastern corner of the site was breached...
Categories: Data,
Data Release - Revised;
Tags: Novato,
San Francisco Bay,
San Pablo Bay,
USGS Science Data Catalog (SDC),
biochemistry,
These datasets are from an incubation experiment with a combination of two minerals (feldspar or amorphous aluminum hydroxide), one living species of bacteria (Escherichia coli), and one added form of C (Arthrobacter crystallopoietes necromass). We characterized the sorptive properties of the minerals with batch sorption experiments using four low molecular weight C substrates (glucose, oxalic acid, glutamic acid, p-hydroxybenzoic acid): this data is provided in the SterileSorptionData file. We then conducted a 3-wk long incubation in serum vials or imaging chambers. In both incubations, feldspar (200 mg) or amorphous aluminum hydroxide (100 mg) was given 1 of 4 different treatments: (1) a water control with autoclaved...
Categories: Data;
Tags: Mineralogy,
Raman spectroscopy,
Soil Sciences,
USGS Science Data Catalog (SDC),
biota,
Re-vegetation of mining wastes is difficult due to the inhospitable conditions for plant growth. Our aim was to determine whether the combined addition of municipal waste compost and plant growth promoting endophytes (i.e., microorganisms that live within plants) could improve plant growth, organic matter accumulation, and phytostabilization of metal contaminants across multiple types of hard rock mine waste. We grew a widespread perennial grass, Bouteloua curtipendula, for 45 days in tailings (Ag-Pb-Au mine) and waste rock (porphyry copper mine) sourced from southeastern Arizona, USA. We quantified organic matter accumulation, microbial biomass, plant growth rates, biomass yields, plant metal concentrations, and...
Note: This data release has been superseded by version 3.0, available here: https://doi.org/10.5066/P9Q2YP9K. The Hamilton Wetland Restoration Project (HWRP) is a joint venture between the US Army Corps of Engineers (USACE; San Francisco District) and the California State Coastal Conservancy. The site is located on the property of the former Hamilton Army Airfield in Novato, California, along the western edge of San Pablo Bay, which is part of northern San Francisco Bay. The initial stages of wetland restoration, which included dredged sediment reuse, took place during 2009–2011. From 2011 until April 2014, the site was maintained as partially flooded through a temporary one-way culvert that allowed bay water onto...
Categories: Data,
Data Release - Revised;
Tags: Geochemistry,
Novato,
San Francisco Bay,
San Pablo Bay,
USGS Science Data Catalog (SDC),
Coastal wetlands are major global carbon sinks, however, they are heterogeneous and dynamic ecosystems. To characterize spatial and temporal variability in a New England salt marsh, static chamber measurements of greenhouse gas (GHG) fluxes were compared among major plant-defined zones (high marsh dominated by Distichlis spicata and a zone of invasive Phragmites australis) during 2013 and 2014 growing seasons. Two sediment cores were collected in 2015 from the Phragmites zone to support previously reported core collections from the high marsh sites (Gonneea and others 2018). Collected cores were up to 70 cm in length with dry bulk density ranges from 0.04 to 0.33 grams per cubic centimeter and carbon content 22.4%...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: 137-cesium,
210-lead,
Cape Cod (606914),
Commonwealth of Massachusetts (606926),
Constant Rate of Supply (CRS) model,
All samples were collected within a 9km stretch of the Santa Fe River in northern Florida, USA. In 2019 and 2020 we sampled claw tissue from Macrochelys suwanniensis, Chelydra serpentina, and Trachemys scripta scripta, from three different sampling locations. We collected Vegetation and potential prey tissue samples within close proximity of turtle captures from two of the three capture locations. All tissues were used for stable carbon and nitrogen isotope analysis.
Categories: Data;
Tags: Ecology,
Florida,
Lower Suwannee,
USGS Science Data Catalog (SDC),
Wildlife Biology,
Eelgrass (Zostera marina) characteristics, sediment grain size distributions, sediment total organic carbon contents (TOC), carbon isotope ratios of sediment organic matter, and total carbon to total nitrogen ratios were measured at four lower intertidal sites in Bellingham Bay, Washington, July 2-5, 2019.
This dataset contains stable isotope (δ13C) and radioisotope (Δ14C) compositions of dissolved inorganic carbon, dissolved organic carbon, particulate organic carbon, and bed material organic carbon samples collected from rivers in the Upper Mississippi River Basin between October 2014 and February 2016. Rivers were sampled at USGS gaging stations: Minnesota River at Fort Snelling State Park, MN (gage #05330920), Mississippi River at Hwy 610 in Brooklyn Park, MN (gage #05288500), St. Croix River at Prescott, WI (gage #05344490), Mississippi River at Prescott, WI (gage #05344500), and Chippewa River at Durand, WI (gage #05369500). One site was also sampled at a location that is not co-located with a gaging station:...
Categories: Data;
Types: Citation;
Tags: Chippewa River (1578997),
Geochemistry,
Hydrogeology,
Minnesota River (659759),
Mississippi River (1629903),
The San Juan Bay Estuary, Puerto Rico, contains mangrove forests that store significant amounts of organic carbon in soils and biomass. There is a strong urbanization gradient across the estuary, from the highly urbanized and clogged Caño Martin Peña in the western part of the estuary, a series of lagoons in the center of the estuary, and a tropical forest reserve (Piñones) in the easternmost part with limited urbanization. We collected sediment cores to determine carbon burial rates and vertical sediment accretion from five sites in the San Juan Bay Estuary. Cores were radiometrically-dated using lead-210 and the Plum age model. Sites had soil C burial rates ranging from 50 grams per meter squared per year (g m-2...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: 137-cesium,
210-lead,
Caño de Martín Peña (1613013),
Commonwealth of Puerto Rico (1779808),
Geochemistry,
Eelgrass and substrate characteristics in Bellingham Bay, Washington, July 2019 and July-August 2020
Eelgrass (Zostera marina) characteristics, sediment grain size distributions, sediment total organic carbon contents (TOC), carbon isotope ratios of sediment organic matter, and total carbon to total nitrogen ratios were measured at four lower intertidal sites in Bellingham Bay, Washington, July 2-5, 2019, and three subtidal sites (grain-size and TOC only) on July 11, 2019.
The Herring River estuary in Wellfleet, Cape Cod, Massachusetts, has been tidally restricted for more than a century by a dike constructed near the mouth of the river. Upstream from the dike, the tidal restriction has caused the conversion of salt marsh wetlands to various other ecosystems including impounded freshwater marshes, flooded shrub land, drained forested upland, and brackish wetlands dominated by Phragmites australis. This estuary is now managed by the National Park Service, which plans to replace the aging dike and restore tidal flow to the estuary. To assist National Park Service land managers with restoration planning, the U.S. Geological Survey collected fourteen sediment cores from different ecosystems...
Categories: Data;
Tags: 137-cesium,
210-lead,
Barnstable County (606927),
Cape Cod (606914),
Cape Cod National Seashore (606900),
These data represent stem growth from whitebark pine at 27 sites in the Sierra Nevada of California. Values for stem growth were derived from increment cores, processed following standard methods. Samples were also compared against a genomic data collected at the same trees. These data support the following publication: van Mantgem, P.J., Milano, E.R., Dudney, J., Nesmith, J.C.B, Vandergast, A.G., and Zald, H.S.J., 2023. Growth, drought response, and climate-associated genomic structure in whitebark pine in the Sierra Nevada of California. Ecology and Evolution. https://doi.org/10.1002/ece3.10072.
Categories: Data;
Tags: California,
Sierra Nevada,
USGS Science Data Catalog (SDC),
biota,
carbon isotope analysis,
These data consist of sulfur and carbon isotope compositions, concentrations of selected elements, and concentrations of pyrite sulfur and organic carbon in mudstone samples collected from five cores drilled in the Howards Pass district, Yukon-Northwest Territories, Canada. The cores were drilled between 2006 and 2014, site visits and core sampling took place between 2009 and 2016, and laboratory work was conducted between 2011 and 2017. The data were obtained as part of a research project described in the following publication: Johnson, Craig A., Slack John F., Dumoulin, Julie A., Kelley, Karen D., and Falck, Hendrick, 2018, Sulfur isotopes of host strata for Howards Pass (Yukon-Northwest Territories) Zn-Pb deposits...
Categories: Data;
Tags: Canada,
Geochemistry,
Mineralogy,
Northwest Territories,
USGS Science Data Catalog (SDC),
Nineteen sediment cores were collected from five salt marshes on the northern shore of Cape Cod where previously restricted tidal exchange was restored to part of the marshes. Cores were collected in duplicate from two locations within each marsh complex: one upstream and one downstream from the former tidal restriction (typically caused by an undersized culvert or a berm). The unaltered, natural downstream sites provide a comparison against the historically restricted upstream sites. The sampled cores represent a chronosequence of restoration occurring between 2001–10. Collected cores were up to 168 cm in length with dry bulk density ranging from 0.04 to 2.62 grams per cubic centimeter and carbon content 0.12 %...
Categories: Data;
Tags: Barnstable County (606927),
Bass Creek (617465),
Boat Meadow River (616844),
Cape Cod (606914),
Cape Cod Canal (619536),
This dataset represents stable carbon and nitrogen isotopic information from tissue samples collected from diamondback terrapins, potential prey items, and vegetation from 6 salt marsh sites (4 mainland, 2 island) within a 30 km section of southern Barnegat Bay, New Jersey, USA. Red blood cells were collected from terrapins in 2011 (mature females), and whole blood samples were collected in 2015 and 2019 from mature males and females and immature females. Vegetation and invertebrates prey samples were collected within proximity of terrapin capture sites in 2015 and 2019.
A critical question for assessing global greenhouse gas budgets is how much of the methane that escapes from seafloor cold seep sites to the overlying water column eventually crosses the sea-air interface and reaches the atmosphere. The issue is particularly important in Arctic Ocean waters since rapid warming there increases the likelihood that gas hydrate--an ice-like form of methane and water stable at particular pressure and temperature conditions within marine sediments--will break down and release its methane to the overlying ocean. Some researchers have even proposed the possibility of an Arctic methane catastrophe characterized by wholesale breakdown of gas hydrates in marine sediments and release of the...
A discrete sample introduction module (DSIM) was developed and interfaced to a cavity ring-down spectrometer to enable measurements of methane and CO2 concentrations and 13C values with a commercially available cavity ring-down spectrometer (CRDS). The DSIM-CRDS system permits the analysis of limited volume (5 - 100-ml) samples ranging six orders-of-magnitude from 100% analyte to the lower limit of instrument detection (2 ppm). We demonstrate system performance for methane by comparing concentrations and 13C results obtained by the DSIM and traditional methods for a variety of sample types, including low concentration (nanomolar) seawater and high concentration (> 90%) natural gas. The expansive concentration range...
Categories: Data;
Tags: Geochemistry,
Temperate Northern Atlantic,
Temperate Northern Pacific,
U.S. Geological Survey,
USGS,
This database contains a comprehensive inventory of geologic (coral, coral reef, limestone, and sediment) cores and samples collected, analyzed, published, and/or archived by, or in collaboration with, the U.S. Geological Survey St. Petersburg Coastal and Marine Science Center (USGS SPCMSC). The SPCMSC Geologic Core and Sample Database includes geologic cores and samples collected beginning in the 1970s to present day, from study sites across the world. This database can be accessed through the CoreViewer 3.0 ArcOnline web mapping application, linked below. A copy of the data can also be downloaded from the web mapping application and the metadata is accessible through a link in the header of the application, as...
Categories: Collection,
Data;
Tags: Alabama,
Atlantic Ocean,
Bahamas,
Belize,
Biological Collection,
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