Ocean Biodiversity Information System (OBIS) - USA Dataset Collection

OBIS-USA brings together marine biological occurrence data – recorded observations of identifiable marine species at a known time and place, collected primarily from U.S. Waters or with U.S. funding. Coordinated by the Science Analytics and Synthesis (SAS) Program of the United States Geological Survey (USGS), OBIS-USA, strives to meet national data integration and dissemination needs for marine data about organisms and ecosystems. OBIS-USA is part of an international data sharing network (Ocean Biodiversity Information System, OBIS) coordinated by the Intergovernmental Oceanographic Commission, of UNESCO (United Nations Educational, Science and Cultural Organization) International Oceanographic Data and Information...

Tags: Arctic Ocean, Atlantic Ocean, Bay of Fundy, Beaufort Sea, Bering Sea, All tags... Bering Strait, Biodiversity, Biological Production, Birds, Bristol Bay, Canada, Caribbean Sea, Census of Marine Life, Chukchi Sea, Commericial Leases, Cook Inlet, Cruise Ships, Distributions, Fishes, Flora, Great Lakes, Gulf of Alaska, Gulf of California, Gulf of Maine, Gulf of Mexico, Habitat, Harvesting Living Resources, Invasive Species, Invertebrates, Kotzebue Sound, Kuskokwim Bay, Mammals, Marine Protected Areas (MPAs), North America, Norton Sound, OBIS, Ocean Biogeographic Information System, Offshore Oil and Gas Production, Pacific Ocean, Puget Sound, Reptiles, Sargasso Sea, Shelikof Strait, South Atlantic Bight, Southern Ocean, Straits of Florida, United States, Wind Energy Production, Yucatan Channel, abundance, algae, animal and plant census, aquatic biology, aquatic ecosystems, benthic ecosystems, benthic habitat, benthos, biodiversity, biogeography, biological productivity, biology, biota, biota, coastal habitat, consumers (organisms), coral reefs, decomposers, ecosystem diversity, ecosystem functions, endemic species, estuarine ecosystems, fisheries management, fishery resources, invasive species, macroinvertebrates, marine animals, marine biology, marine ecosystems, marine mammals, microbes, migratory species, native species, nekton, nonindigenous species, oceans, pelagic habitat, phytoplankton, plankton, plants, plants (organisms), producers (organisms), protected species, reef ecosystems, reef habitat, sea birds, sea turtles, shellfish, species diversity, vegetation, vertebrates, wildlife, zooplankton, Fewer tags

Detection of Seagrass Pathogens Using Environmental DNA (eDNA), North Pacific, 2016-present

This data set is comprised of one table with sampling information and NCBI BioProject accession numbers for sequence information of this amplicon-based study targeting Labyrinthula, Phytophthora, and Halophytophthora of known pathogenic and non-pathogenic [to eelgrass (Zostera marina)] strains from eDNA samples. eDNA samples included water, sediment, and eelgrass from Notsuke Wan (Cove) Japan, Safety Sound, Izembek Lagoon, Port Moller, Chignik Lagoon, and Frederick Sound, Alaska and cloacal swabs from waterfowl hunted near Cold Bay Alaska. Replicate samples and multiple sampling dates of the same location were included. Highly conserved primers which could differentiate species of interest were developed for four...

Categories: Data, Data Release - Revised; Tags: Alaska, Animals/Vertebrates, Aquatic Biology, Aquatic ecosystems, Biological informatics, All tags... Biota, Birds, DNA Primers, DNA, Mitochondrial, Databases, Nucleic acid, Decline (Plant disease), Disease detection, Disease spread, Disease vectors, Ducks/Geese/Swans, Ecological processes, Ecosystem, Ecosystem diversity, Environment, Environmental DNA, Environmental DNA, Feasibility studies, Field sampling, Genetics, Halophytophthora, Hokkaido, Izembek National Wildlife Refuge, Japan, Labyrinthula sp., Labyrinthula zosterae, Marine biology, Marine environment monitoring, Mitochondrial DNA, Ocean circulation, Oceans and Seas, Phytophthora gemini, Plants, Species/Population Interactions, USGS Science Data Catalog (SDC), Zostera marina, eDNA, Fewer tags

Prioritization of areas for open pine ecosystem restoration in the Southeastern United States: All Species

We used NLCD 2011, SSURGO, and SEGAP data to map the density of desired resources for open pine ecosystems and six focal species of birds and 2 reptiles within the historic range of longleaf pine east of the Mississippi River. Binary rasters were created of sites with desired characteristics such as land form, hydrology, land use and land cover, soils, potential habitat for focal species, and putative source populations of focal species. Each raster was smoothed using a kernel density estimator. Rasters were combined and scaled to map priority locations for the management of each focal species. Species’ rasters were combined and scaled to provide maps of overall priority for birds and for birds and reptiles. For...

Categories: Data; Types: Citation, Downloadable, GeoTIFF, Map Service, Raster; Tags: Bird Conservation Region 24, East Gulf Coastal Plain Joint Venture, Florida, Georgia, Louisiana, All tags... Mississippi, NCCWSC, North Carolina, South Carolina, Southeastern United States, USGS Science Data Catalog (SDC), ecosystem diversity, ecosystem functions, ecosystem management, ecosystems, restoration, Fewer tags

Ocean Biogeographic Information System (OBIS) - USA Dataset Collection

OBIS-USA brings together marine biological occurrence data – recorded observations of identifiable marine species at a known time and place, collected primarily from U.S. Waters or with U.S. funding. Coordinated by the Core Science, Analytics, Synthesis, and Libraries (CSAS&L) Program of the United States Geological Survey (USGS), OBIS-USA, strives to meet national data integration and dissemination needs for marine data about organisms and ecosystems. OBIS-USA is part of an international data sharing network (Ocean Biogeographic Information System, OBIS) coordinated by the Intergovernmental Oceanographic Commission, of UNESCO (United Nations Educational, Science and Cultural Organization International Oceanographic...

Categories: Project; Types: NSDI Cooperative Agreements Program Project; Tags: Arctic Ocean, Atlantic Ocean, Bay of Fundy, Beaufort Sea, Bering Sea, All tags... Bering Strait, Biodiversity, Biological Production, Birds, Bristol Bay, Canada, Caribbean Sea, Census of Marine Life, Chukchi Sea, Commericial Leases, Cook Inlet, Cruise Ships, Distributions, Fishes, Flora, Great Lakes, Gulf of Alaska, Gulf of California, Gulf of Maine, Gulf of Mexico, Habitat, Harvesting Living Resources, Invasive Species, Invertebrates, Kotzebue Sound, Kuskokwim Bay, Mammals, Marine Protected Areas (MPAs), North America, Norton Sound, OBIS, Ocean Biogeographic Information System, Offshore Oil and Gas Production, Pacific Ocean, Puget Sound, Reptiles, Sargasso Sea, Shelikof Strait, South Atlantic Bight, Southern Ocean, Straits of Florida, United States, Wind Energy Production, Yucatan Channel, abundance, algae, animal and plant census, aquatic biology, aquatic ecosystems, benthic ecosystems, benthic habitat, benthos, biodiversity, biogeography, biological productivity, biology, biota, biota, coastal habitat, consumers (organisms), coral reefs, decomposers, ecosystem diversity, ecosystem functions, endemic species, estuarine ecosystems, fisheries management, fishery resources, invasive species, macroinvertebrates, marine animals, marine biology, marine ecosystems, marine mammals, microbes, migratory species, native species, nekton, nonindigenous species, oceans, pelagic habitat, phytoplankton, plankton, plants, plants (organisms), producers (organisms), protected species, reef ecosystems, reef habitat, sea birds, sea turtles, shellfish, species diversity, vegetation, vertebrates, wildlife, zooplankton, Fewer tags

Detection of Multiple Fish Species Using Environmental DNA (eDNA), Alaska 2018

This release provides results of an environmental DNA (eDNA) study of fish identified in seven Alaskan lakes, three streams, and a positive control. Samples included replicates for multiple sampling dates and locations. The reference list and conserved primer sets to identify species present were developed using publicly available data (https://www.ncbi.nlm.nih.gov/genbank/). Highly conserved primers which could differentiate species of interest were developed for three portions of mtDNA genes (12S, 16S and COI).

Categories: Data; Tags: Alaska, Alaska, Animals, Animals/Vertebrates, Aquatic Biology, All tags... Aquatic Ecosystems, Biodiversity, Biota, DNA, DNA Primers, DNA, Mitochondrial, Ecosystem Diversity, Environment, Environmental DNA, Fish, Fish, Genetic Diversity, Genetics, Mitochondrial DNA, Native Species, Species composition, USGS Science Data Catalog (SDC), Fewer tags

Spatially explicit estimates of ecological resilience and resistance across the sagebrush biome under ambient and projected historical and future climate conditions

These data were compiled to provide a quantitative, spatially explicit estimate of ecological resilience and resistance (R&R) under ambient and projected future climate conditions. Objective of our study was to understand where and why climate change will alter the distribution of ecological resilience and resistance in the sagebrush biome throughout the 21st century. To accomplish this, we pursued four specific objectives: we estimated the new R&R indicators under future climate conditions and quantified changes from historical conditions; we developed a continuous R&R index that integrates probability information from the underlying predictive R&R models; we assessed the robustness of projected changes in R&R...

Tags: Arizona, Botany, California, Climatology, Colorado, All tags... Ecology, Forestry, Geography, Idaho, Information Sciences, Montana, Nebraska, Nevada, New Mexico, North Dakota, Oregon, South Dakota, USGS Science Data Catalog (SDC), Utah, Washington, Wyoming, biogeography, biota, cheatgrass, climate change, climatologyMeteorologyAtmosphere, data release, datasets, dryland, ecological processes, ecology, ecosystem diversity, ecosystem management, ecosystem resilience, environment, fires, invasive species, life sciences, modeling, natural resource management, open woodland, plants (organisms), remediation, resistance, sagebrush region, shrubland ecosystems, terrestrial ecosystems, vegetation, weeds, western United States, Fewer tags