Filters: Tags: genetic diversity (X)
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These data represent a digital map of the average diversity genetic landscape for 10 species: Anaxyrus punctatus, Chionactis occipitalis, Chaetodipus penicillatus, Crotophytus bicinctores, Crotalus cerastes, Homalonychus selenopoides, Homalonychus theologus, Lichanura trivirgata, Sceloporus magister, and Xantusia vigilis in the Mojave and Sonoran Deserts. Utility scale renewable energy development projects are currently proposed across the deserts of the Southwestern United States. Agencies that manage biological resources must understand the potential impacts of these projects and infrastructure (e.g., transmission corridors, substations, access roads, etc.) in order to select appropriate development sites and...
This data release comprises a dataset that contains sample collection information and microsatellite genotypes, and another dataset that contains single nucleotide polymorphism (SNP) genotypes with sample collection information for populations of white-tailed ptarmigan across the species' range. There is also an additional file (accession numbers.xlsx) linking samples to accession numbers in Genbank. This data was collected in order to address the following: The delineation of intraspecific units that are evolutionarily and demographically distinct is an important step in the development of species-specific management plans. Neutral genetic variation has served as the primary data source for delineating units for...
This dataset includes microsatellite genotypes for 44 collections of Habroscelimorpha dorsalis dorsalis and 14 collections of H. d. media distributed from Massachusetts to Florida, United States.
These data were compiled to provide seed transfer and native plant materials development guidance to managers and practitioners across the Colorado Plateau and in adjacent regions. This data release contains empirical seed transfer zones derived from molecular genetic data for Cleome lutea (syn. Peritoma lutea) and Machaeranthera canescens (syn. Dieteria canescens). These species show distinct population structure (i.e., genetic differentiation) across their ranges; as such, seed transfer zones reflect both patterns of genetic differentiation and information on each species' unique adaptations to climatic gradients. These shapefile data may support successful restoration outcomes if, for example, seed transfer follows...
We investigated fine-scale genetic patterns of the federally threatened Eastern Massasauga Rattlesnake (Sistrurus catenatus) on a relatively undisturbed island in northern Michigan, USA. This species often persists in habitat islands throughout much of its distribution due to extensive habitat loss and distance-limited dispersal. These data are from 102 individual Eastern Massasauga Rattlesnakes sampled at Bois Blanc Island, Michigan and genotyped at 15 microsatellite loci. Samples were collected as part of a study to examine functional connectivity for the Eastern Massasauga. We found that the entire island population exhibited weak genetic structuring with spatially segregated variation in effective migration...
The data release details the samples, methods, and raw data used to generate high-quality genome assemblies for greater sage-grouse (Centrocercus urophasianus), white-tailed ptarmigan (Lagopus leucura), and trumpeter swan (Cygnus buccinator). The raw data have been deposited in the Sequence Read Archive (SRA) of the National Center for Biotechnology Information (NCBI), the authoritative repository for public biological sequence data, and are not included in this data release. Instead, the accessions that link to those data via the NCBI portal (www.ncbi.nlm.nih.gov) are provided herein. The release consists of a single file, sample.metadata.txt, which maps NCBI accessions to the samples sequenced and the different...
Utility scale renewable energy development projects are currently proposed across the deserts of the Southwestern United States. Agencies that manage biological resources must understand the potential impacts of these projects and infrastructure (e.g., transmission corridors, substations, access roads, etc.) in order to select appropriate development sites and to mitigate for anticipated effects. Of major concern is determining how future development will impact wildlife movement and genetic exchange among core protected areas and whether increased fragmentation will impact species' abilities to adapt to changing environmental conditions. The adaptive and evolutionary potential of a species is ultimately dependent...
Little is known about the population biology of midget faded rattlesnakes, a sensitive subspecies of the Western Rattlesnake, despite conservation efforts to protect them. We conducted a molecular genetic study of midget faded rattlesnakes in southwestern Wyoming to investigate population genetic structure in this area, particularly with reference to Flaming Gorge Reservoir and its associated human activities, and to document levels of genetic diversity. We genotyped 229 snakes from 11 sampling sites using 9 microsatellite loci. We found significant levels of genetic structure among sites that were better explained by geographic region and isolation by distance than by position relative to waterways. Sites on either...
Categories: Publication;
Types: Citation,
Journal Citation;
Tags: Conservation Genetics,
Crotalus oreganus concolor,
Gene flow,
Genetic diversity,
Microsatellites,
Utility scale renewable energy development projects are currently proposed across the deserts of the Southwestern United States. Agencies that manage biological resources must understand the potential impacts of these projects and infrastructure (e.g., transmission corridors, substations, access roads, etc.) in order to select appropriate development sites and to mitigate for anticipated effects. Of major concern is determining how future development will impact wildlife movement and genetic exchange among core protected areas and whether increased fragmentation will impact species' abilities to adapt to changing environmental conditions. The adaptive and evolutionary potential of a species is ultimately dependent...
Utility scale renewable energy development projects are currently proposed across the deserts of the Southwestern United States. Agencies that manage biological resources must understand the potential impacts of these projects and infrastructure (e.g., transmission corridors, substations, access roads, etc.) in order to select appropriate development sites and to mitigate for anticipated effects. Of major concern is determining how future development will impact wildlife movement and genetic exchange among core protected areas and whether increased fragmentation will impact species' abilities to adapt to changing environmental conditions. The adaptive and evolutionary potential of a species is ultimately dependent...
To understand the genetic structure of six rare plant species (Acanthomintha ilicifolia, Baccharis vanessae, Chloropyron maritimum ssp. maritimus, Deinandra conjugens, Dicranostegia orcuttiana, Monardella viminea), we obtained samples from known occurrences in San Diego County, prepared and sequenced ddRAD genomic libraries, and developed and analyzed a panel of genetic markers to assess population diversity and divergence. We provide this SNP genotype dataset in Structure format, produced in Stacks v2.0b8, for future monitoring efforts and population genetic analysis. These data support the following publication: Milano, E.R., and Vandergast, A.G., 2018, Population genomic surveys for six rare plant species in...
This data set contains genetic information collected from eelgrass (Zostera marina) populations along the Pacific coast of North America from Alaska to Baha California. A total of 447 samples were collected comprising 401 unique individuals (genets) and 46 clones (ramets) from which 10 microsatellite DNA loci were obtained.
Categories: Data;
Types: Citation;
Tags: Angiosperms (Flowering Plants),
AquaticEcosystems,
Bahia Magdelena,
Bahia San Quintin,
Biological Classification,
Conversion and fragmentation of wildlife habitat often leads to smaller and isolated populations and can reduce a species’ ability to disperse across the landscape. As a consequence, genetic drift can quickly lower genetic variation and increase vulnerability to extirpation. For species of conservation concern, quantification of population size and connectivity can clarify the influence of genetic drift in local populations and provides important information for conservation management and recovery strategies. Here, we used genome-wide single nucleotide polymorphism (SNP) data and capture-mark-recapture methods to evaluate the population structure, genetic diversity and abundance of seven focal sites of the endangered...
These datasets were developed to represent the genetic diversity, population structure, and geographic distribution of Plantago ovata in the Mojave Desert. This data release consists of two tab-delimited text files representing the genetic diversity and structure of Plantago ovata (.genepop and .vcf), and two raster spatial datasets (GeoTIFF) reflecting predicted habitat for the species within the Mojave Desert. The genetic datasets record genetic variation at an individual level, with the file structures varying based on the programs within which the files are intended to be edited. Each file contains 13,111 SNPs genotyped in 748 individuals. The genepop file can be viewed in GENEPOP software (Rousset 2008) or...
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Arizona,
Botany,
California,
Genetics,
Mojave,
Reported here are the metabarcoding read numbers and biomass data assessed from a fish community in a southern Florida pond in Pinecrest Gardens after invasive species eradication and native restocking in 2017 and 2018 in linear regression models. This dataframe contains the number of fish of each species identified, their measured lengths estimated population surface area, and the number of metabarcoding reads (with SD and COV) for each species observed from the sampling date.
Categories: Data;
Tags: Ecology,
Genetics,
Genetics,
Southern Florida,
USGS Science Data Catalog (SDC),
These are genetic data collected from replicated samples of 21 Enteroctopus (E. dofleini or a cryptic lineage) in Prince William Sound Alaska to evaluate tissue type, DNA extraction method, and time until analyses are completed on data reliability. Data collected from all samples include two microsatellites identified as possible lineage indicators, and nine microsatellite loci previously identified as polymorphic in both lineages. DNA sequence data from 528 bp of the octopine dehydrogenase (OCDE) gene were also collected.
Categories: Data;
Tags: Amino Acid Oxidoreductases,
Animals/Invertebrates,
Bald Head Chris Island,
Biodiversity,
Biodiversity,
The distribution and abundance of the greater sage-grouse (Centrocercus urophasianus) have declined dramatically, and as a result the species has become the focus of conservation efforts. We conducted a range-wide genetic survey of the species which included 46 populations and over 1000 individuals using both mitochondrial sequence data and data from seven nuclear microsatellites. Nested clade and STRUCTURE analyses revealed that, in general, the greater sage-grouse populations follow an isolation-by-distance model of restricted gene flow. This suggests that movements of the greater sage-grouse are typically among neighbouring populations and not across the species, range. This may have important implications if...
Categories: Publication;
Types: Citation,
Journal Citation;
Tags: Colorado,
Molecular Ecology,
allele frequency data,
centrocercus,
cladistic analysis,
Utility scale renewable energy development projects are currently proposed across the deserts of the Southwestern United States. Agencies that manage biological resources must understand the potential impacts of these projects and infrastructure (e.g., transmission corridors, substations, access roads, etc.) in order to select appropriate development sites and to mitigate for anticipated effects. Of major concern is determining how future development will impact wildlife movement and genetic exchange among core protected areas and whether increased fragmentation will impact species' abilities to adapt to changing environmental conditions. The adaptive and evolutionary potential of a species is ultimately dependent...
Utility scale renewable energy development projects are currently proposed across the deserts of the Southwestern United States. Agencies that manage biological resources must understand the potential impacts of these projects and infrastructure (e.g., transmission corridors, substations, access roads, etc.) in order to select appropriate development sites and to mitigate for anticipated effects. Of major concern is determining how future development will impact wildlife movement and genetic exchange among core protected areas and whether increased fragmentation will impact species' abilities to adapt to changing environmental conditions. The adaptive and evolutionary potential of a species is ultimately dependent...
Utility scale renewable energy development projects are currently proposed across the deserts of the Southwestern United States. Agencies that manage biological resources must understand the potential impacts of these projects and infrastructure (e.g., transmission corridors, substations, access roads, etc.) in order to select appropriate development sites and to mitigate for anticipated effects. Of major concern is determining how future development will impact wildlife movement and genetic exchange among core protected areas and whether increased fragmentation will impact species' abilities to adapt to changing environmental conditions. The adaptive and evolutionary potential of a species is ultimately dependent...
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