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Genomic Determination of Hoary Bat Population History and Trend Observing and counting bats is extremely difficult. Bats hide during the day, fly in darkness, and most species in the United States (US) become inactive and inaccessible in cryptic hibernation sites for 7-8 months each year. More than 40 different species of bats occur year-round in the US, yet reasonable population estimates exist for very few. Populations of US bats face new and unprecedented threats from white-nose syndrome (WNS) and industrial wind turbines. Like WNS, wind energy development might adversely affect entire populations of bats. Species of bats dying at wind turbines in the greatest numbers rank among the most cryptic, elusive, and poorly understood. Hoary bats (Lasiurus cinereus) compose approximately... Categories: Data, Project; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: EARTH SCIENCE > LAND SURFACE > LANDSCAPE, Hoary bat, Midwest R3 Science Applications, Project, environment, All tags... funded, genetics, genomics, population dynamics, Fewer tags Genotypes for six rare plant species found in San Diego County in 2016-2017 To understand the genetic structure of six rare plant species (Acanthomintha ilicifolia, Baccharis vanessae, Chloropyron maritimum ssp. maritimus, Deinandra conjugens, Dicranostegia orcuttiana, Monardella viminea), we obtained samples from known occurrences in San Diego County, prepared and sequenced ddRAD genomic libraries, and developed and analyzed a panel of genetic markers to assess population diversity and divergence. We provide this SNP genotype dataset in Structure format, produced in Stacks v2.0b8, for future monitoring efforts and population genetic analysis. These data support the following publication: Milano, E.R., and Vandergast, A.G., 2018, Population genomic surveys for six rare plant species in... Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Botany, Genetics, San Diego, USGS Science Data Catalog (SDC), biological population management, All tags... ddRADseq, endangered species, genetic diversity, plants (organisms), Fewer tags Genetic and Habitat Data for Plantago ovata in the Mojave Desert These datasets were developed to represent the genetic diversity, population structure, and geographic distribution of Plantago ovata in the Mojave Desert. This data release consists of two tab-delimited text files representing the genetic diversity and structure of Plantago ovata (.genepop and .vcf), and two raster spatial datasets (GeoTIFF) reflecting predicted habitat for the species within the Mojave Desert. The genetic datasets record genetic variation at an individual level, with the file structures varying based on the programs within which the files are intended to be edited. Each file contains 13,111 SNPs genotyped in 748 individuals. The genepop file can be viewed in GENEPOP software (Rousset 2008) or... Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Arizona, Botany, California, Genetics, Mojave, All tags... Nevada, USGS Science Data Catalog (SDC), Utah, biogeography, biota, evolution, genetic diversity, habitats, maps and atlases, native plant materials development, native species, species distribution model, Fewer tags USGS Earthmap Capacity Assessment Dataset The U.S. Geological Survey provides a wide range of scientific information to an even wider group of stakeholders. Understanding what capacities are needed and if and or where these capacities exist across the USGS landscape is critical in moving science to the next level of use, implementation, and visualization. The concept behind the groups organized to conduct and interpret the survey that collected these data took advantage of the USGS’s position as a science organization with expertise spanning a wide range of science disciplines, stakeholders, and responsibilities. A survey was conducted of USGS employees (Sep 20-Nov 20) to get a current sample of the capacities that exist across the USGS. Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Aquatic Biology, Botany, Climatology, Ecology, Economic Geology, All tags... Energy Resources, Environmental Health, Forestry, Genetics, Geochemistry, Geography, Geomorphology, Geophysics, Glaciology, Hydrology, Information Sciences, Land Use Change, Limnology, Marine Geology, Mineral Resources, Planetary Sciences, Remote Sensing, Sedimentology, Seismology, Soil Sciences, Stratigraphy, Structural Geology, USGS Science Data Catalog (SDC), United States, Volcanology, Water Quality, Water Resources, Wildlife Biology, Wildlife Disease, capability, capacity, survey, Fewer tags Information tables associated with a risk assessment for bull trout introduction into Sullivan Lake, northeastern, Washington including population donor sources and resident species, April 2021 Introduction and translocation programs require thoughtful planning to increase the likelihood of success and to understand the benefits, risks, and constraints of such programs. A risk assessment was completed for bull trout introduction into the Sullivan Lake and Harvey Creek watershed, northeastern Washington. The risk assessment was designed to evaluate potential risks to resident fish species, to bull trout introduced into Sullivan Lake, and to bull trout donor source populations. The risk assessment describes the potential risks associated with pathogens, genetics, and ecological interactions. Literature reviews were completed for fish species composition and abundance in Sullivan Lake watershed to assess... Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Aquatic Biology, British Columbia, Ecology, Genetics, Idaho, All tags... Montana, USGS Science Data Catalog (SDC), Washington, Fewer tags Cyanotoxin, chlorophyll-a, and cyanobacterial toxin genetic data for samples collected at twelve large river sites throughout the United States, June through October 2019 This U.S. Geological Survey (USGS) data release provides discretely measured cyanotoxin, chlorophyll-a, and cyanobacterial toxin genetic data for samples collected from twelve large river sites throughout the United States, from June through October 2019. Discrete water-quality samples were analyzed for cyanotoxins (anatoxin, cylindrospermopsin, microcystin, and saxitoxin), chlorophyll-a, and cyanobacterial toxin genetics as part of a National Water-Quality Assessment Project pilot study to describe cyanobacteria and cyanotoxin occurrence in the Nation's large rivers. The data release contains the genetic data (in .csv and .xlsx formats), qPCR standard curve information (in .csv and .xlsx formats), and a readme... Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Anatoxin, California, Chattahoochee River near Whitesburg, GA, Chlorophyll-a, Connecticut, All tags... Connecticut River at Thompsonville, CT, Contaminants, HABS, Cyanotoxin genetics, Cyanotoxins, Cylindrospermopsin, Delaware River at Trenton, NJ, Discretely measured, Dolichospermum (formerly Anabaena), Enzyme-linked immunosorbent assay (ELISA), Genetics, Georgia, Hudson River near Poughkeepsie, NY, Kansas, Kansas River at De Soto, KS, Maryland, Microcystin, Microcystis, Minnesota, Mississippi River at Hastings, MN, Missouri, Missouri River at Hermann, MO, New Jersey, New York, Ohio, Ohio River at Cannelton Dam at Cannelton, IN, Oregon, Pheophytin-a, Phytoplankton community composition, Planktothrix, Quantitative polymerase chain reaction (qPCR), Sacramento River at Freeport, CA, Saxitoxin, Susquehanna River at Conowingo, MD, Texas, Trinity River below Dallas, TX, USGS Science Data Catalog (SDC), USGS Station ID 01184000, USGS Station ID 01372043, USGS Station ID 01463500, USGS Station ID 01578310, USGS Station ID 02338000, USGS Station ID 03303280, USGS Station ID 05331580, USGS Station ID 06892350, USGS Station ID 06934500, USGS Station ID 08057410, USGS Station ID 11447650, USGS Station ID 14211720, United States, Water, Water Quality, Water quality, Willamette River at Portland, OR, anaC gene, cyrA gene, mcyE gene, sxtA gene, Fewer tags Quantitative polymerase chain reaction (qPCR) cyanotoxin data for eight mesocosm experiments in the Caloosahatchee River, Florida from May 2019 through August 2021 An interdisciplinary and multiagency study was conducted in southern Florida to examine harmful algal bloom (HAB) dynamics on the Caloosahatchee River, which drains from Lake Okeechobee to the west into the Gulf of Mexico. Using in-situ mesocosm experiments, ammonium, nitrate, phosphate, and urea were altered from ambient conditions to determine the effects on cyanotoxin biosynthesis gene presence and quantity as measured via quantitative polymerase chain reaction (qPCR). Eight experiments were conducted seasonally from May 2019 through July 2021 at the W.P. Franklin Lock and Dam. The experimental installations consisted of three floating metal cradles each containing four opaque fiberglass chambers filled with... Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Caloosahatchee, Environmental Health, Genetics, Limnology, USGS Science Data Catalog (SDC), All tags... W.P. Franklin Lock and Dam, Water Resources, algal blooms, biota, cyanobacteria ["blue-green algae"], hazards, polymerase chain reaction, toxin research, Fewer tags From Genotype to River Basin: The combined impacts of climate change on bio-control on a dominant riparian invasive tree/shrub (Tamarisk spp.) Delivering adequate water supplies to support expanding human enterprise while maintaining the necessary flow regimes to support desired riparian ecosystems and formally protected wildlife species that depend upon them is increasingly difficult in the arid western United States. Many riparian systems have undergone dramatic alteration over the last 50 - 100 years, exacerbating the conflicts between resource use and biodiversity protection. One of the most visible changes that is in part due to altered flow regimes is the establishment of invasive plant species in riparian ecosystems. The highest priority invasive riparian plant is the Eurasian tree/shrub, tamarisk (or saltcedar, Tamarix spp.) the third most abundant... Categories: Data, Project; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: 2012, AZ-01, AZ-02, AZ-03, AZ-04, All tags... AZ-05, AZ-06, AZ-07, AZ-08, AZ-09, Arizona, BIOSPHERE, CA-08, CA-36, CA-51, COMMUNITY DYNAMICS, Conservation NGOs, Conservation Planning, Datasets/Database, Desert Landscape Conservation Cooperative, EARTH SCIENCE, ECOLOGICAL DYNAMICS, Federal resource managers, INVASIVE SPECIES, LCC, LCC Network Science Catalog, Lower Colorado River Basin, Map, Methodology/Protocol, Mojave Desert Pilot Area, NM-02, NM-03, NV-04, Nevada, Population & Habitat Evaluation/Projection, Project, State agencies, UT-02, United States, Utah, Virgin River watershed, Vulnerability Assessment, biota, climate change, completed, drought, genetics, invasive species, phenology, riparian, stream flow, tamarisk, tamarisk leaf beetles, water supply, woody plants, Fewer tags Burmese python environmental DNA data, and environmental covariates, collected from wading bird aggregations and control sites in the Greater Everglades Ecosystem, United States, in 2017 Environmental DNA (eDNA) water samples were collected at 15 tree islands containing wading bird breeding colonies (order Pelecaniformes) and 15 empty control islands in the central Everglades of Florida in spring of 2017 (April through June) and analyzed for the presence of eDNA from invasive Burmese pythons (Python bivittatus). The Burmese python is now established as a breeding population throughout south Florida, USA. Pythons can consume large quantities of prey and may be a particular threat to wading bird breeding colonies in the Everglades. To quantify python occupancy rates at tree islands where wading birds breed, we utilized environmental DNA (eDNA) analysis—a genetic tool which detects shed DNA in water... Categories: Data; Types: Downloadable, GeoTIFF, Map Service, Raster; Tags: Aquatic Biology, Broward, Everglades, Genetics, Miami-Dade, All tags... Python, USGS Science Data Catalog (SDC), Wildlife Biology, droplet digital PCR, environmental DNA, invasive species, multi-scale occupancy model, non-invasive detection, wildlife biology, Fewer tags Concentrations of environmental DNA (eDNA) during sockeye salmon spawning in 2016, Hansen Creek, Alaska, USA This dataset contains environmental DNA (eDNA) concentrations and spawning adult abundances for sockeye salmon (Oncorhynchus nerka) in Hansen Creek, a small tributary in the Wood River watershed, southeast Alaska, USA. We took temporally- and spatially-replicated eDNA samples during the spawning period (mid-July through August), along with fish counts (live, naturally dead, and killed), dissolved oxygen (DO), discharge, and temperature data at each time of sampling. Samples were collected at each site before adults entered the stream, and then continued to be collected daily or every other day for the next three weeks. Categories: Data; Types: Downloadable, Map Service, OGC WFS Layer, OGC WMS Layer, Shapefile; Tags: Alaska, Aleknagik Lake, CO3, DNeasy, Hansen Creek, All tags... TaqMan MGB, USGS Science Data Catalog (SDC), United States, Wood River watershed, biota, cellulose nitrate, conservation genetics, filtration, freshwater ecosystems, genetics, inlandWaters, qPCR, water sampling, Fewer tags Genetically informed seed transfer zones for Astragalus lonchocarpus, Cleome serrulata, and Heliomeris multiflora across the Colorado Plateau and adjacent regions These data were compiled to provide seed transfer and native plant materials development guidance to managers and practitioners across the Colorado Plateau and in adjacent regions. This data release contains empirical seed transfer zones derived from molecular genetic data for Cleome serrulata (syn. Peritoma serrulata), Heliomeris multiflora, and Astragalus lonchocarpus. These species show distinct population structure (i.e., genetic differentiation) across their ranges; as such, seed transfer zones reflect both patterns of genetic differentiation and information on each species' unique adaptations to climatic gradients. These shapefile data may support successful restoration outcomes if, for example, seed transfer... Categories: Data; Types: Downloadable, Map Service, OGC WFS Layer, OGC WMS Layer, Shapefile; Tags: Arizona, Astragalus lonchocarpus, Botany, Cleome serrulata (syn. Peritoma serrulata), Colorado, All tags... Colorado Plateau, Ecology, Genetics, Geography, Heliomeris multiflora, Information Sciences, Intermountain West, Nevada, New Mexico, North America, USGS Science Data Catalog (SDC), United States, Utah, Wyoming, adaptation, air temperature, biogeography, biota, climatic gradients, data release, differentiation, effects of climate change, environment, environmental restoration, field inventory and monitoring, flora restoration, genetic differentiation, genetic diversity, genetic resources, genetic variation, mean annual precipitation, molecular biology, molecular genetic data, native plant, native species, natural resource management, plants (organisms), population and community ecology, population differentiation, population dynamics, precipitation (atmospheric), precipitation seasonality, restoration, seed accessions, seed strategies, seed transfer, seed transfer zones, species diversity, species' adaptations, temperature seasonality, Fewer tags Final Report and Publication: From Genotype to River Basin: The combined impacts of climate change on bio-control on a dominant riparian invasive tree/shrub Executive summary: Tamarisk control and removal has become a priority of riparian ecosystem management, due in part to its potential negative impacts on stream flow and groundwater recharge. Among the most controversial, and potentially most effective tamarisk control approaches is the introduction of the tamarisk leaf beetle, Diorhabda carinulata. The beetle has spread throughout virtually the entire upper Colorado River Basin, established major populations at Lake Mead in 2012, and is now poised to expand into the lower Colorado River Basin concordant with documented evolutionary change in beetle developmental response that may enable survival in southern regions. Superimposed on this direct plant/herbivore relationship... Categories: Data, Publication; Types: Citation, Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: 2012, AZ-01, AZ-02, AZ-03, AZ-04, All tags... AZ-05, AZ-06, AZ-07, AZ-08, AZ-09, Arizona, BIOSPHERE, CA-08, CA-36, CA-51, COMMUNITY DYNAMICS, Conservation NGOs, Conservation Planning, Data.gov Desert LCC, Datasets/Database, EARTH SCIENCE, ECOLOGICAL DYNAMICS, Federal resource managers, INVASIVE SPECIES, LCC Network Science Catalog, Lower Colorado River Basin, Map, Methodology/Protocol, Mojave Desert Pilot Area, NM-02, NM-03, NV-04, Nevada, Population & Habitat Evaluation/Projection, Publication, Report, State agencies, UT-02, United States, Utah, Virgin River watershed, Vulnerability Assessment, biota, climate change, completed, drought, genetics, invasive species, phenology, riparian, stream flow, tamarisk, tamarisk leaf beetles, water supply, woody plants, Fewer tags Quantitative polymerase chain reaction (qPCR) cyanotoxin data for 21 sites on Lake Okeechobee and the Okeechobee waterway, Florida, USA collected monthly from March 2019 through October 2021 Quantitative polymerase chain reaction (qPCR) data were compiled for the biosynthesis genes of five toxins of interest produced by cyanobacteria as well as an internal control. Sample deoxyribonucleic acid (DNA) were collected from 21 sites which includes 17 sites from Lake Okeechobee, and four sites from the Caloosahatchee River and the St. Lucie River. Samples were collected on a monthly basis from March 2019 through October 2021, provided water levels were high enough for a sample to be collected. Samples from Lake Okeechobee were collected by the South Florida Water Management District (SFWMD) and samples from the Caloosahatchee and St. Lucie Rivers were collected by the U.S. Geological Survey (USGS). Environmental... Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Caloosahatchee River, Environmental Health, Genetics, Lake Okeechobee, Limnology, All tags... St. Lucie River, USGS Science Data Catalog (SDC), Water Resources, algal blooms, biota, cyanobacteria ["blue-green algae"], polymerase chain reaction, toxin research, Fewer tags