Filters: Tags: mark-recapture (X)
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These data were compiled here to fit various versions of Bayesian population models and compare their performance, primarily the time required to make inferences using different softwares and versions of code. The humpback chub data were collected by US Geological Survey and US Fish and Wildlife service in the Colorado and Little Colorado Rivers from April 2009 to October 2017. Adult fish were captured using hoop nets and electro-fishing, measured for total length and given individual marks using passive integrated transponders that were scanned when fish were recaptured. The other three datasets were collected by US Forest Service. Owl data for the N-occupancy model was collected between 1990 and 2015. Owl data...
These data were compiled to examine rates of skipped migration in adult humpback chub that spawn in the Little Colorado River (LCR). These data include mark-recapture information from the lower 13.56 kilometers of the LCR and from the Colorado River, from river kilometer 105.5-145.7 downstream of Glen Canyon Dam. Data also include detections from a multiplexer array (MUX) that is located in the LCR and from submersible PIT tag antennas that are deployed in parts of the Colorado River. These data are capture histories that include both spring and fall sampling events that occurred between spring 2009 and spring 2019. Capture histories can include information about size (small adults being 200-249mm total length and...
The files in the sub-folder "1. Juvenile coho salmon abundance and survival" consist of fish survey data and the associated analysis. The file "02_Fish survey data_all events_2019-11-27.csv" contains the actual fish survey data that was collected in Mason Creek, tributary of East Fork Lewis River, SW Washington, during summer of 2017. The protocol for the fish surveys are outline in the file "Fish Rescue Field Protocol_2017_FINAL VERSION_2017-06-01.pdf". The abundance and survival analysis can be found in the file "Juvenile MR abundance_Coho_02Contraints_2019-12-02.R". This file should be loaded through the .Rproj file "Fish Abundance.Rproj". There are many files needed to run the analysis that consist of summaries...
Categories: Data;
Tags: Drought,
Drought, Fire and Extreme Weather,
Fish,
Northwest CASC,
Rivers, Streams and Lakes,
These data are the primary data used to model rainbow trout growth in Glen Canyon. Fish growth data were collected from nighttime boat electrofishing field campaigns conducted five to six times per year in April, July, September, and January, from April 2012 through November 2021 for a total of 9798 observations of mark-recapture-based growth. Sampling was conducted in a five km reach in the lower portion of the Glen Canyon tailwater (3.7-8.9 km upstream of Lees Ferry, AZ). Two nights of sampling occurred on each trip, with the central 2-3 km of the reach sampled on both nights. After capture, fish were kept in aerated 40-L buckets and transported to a central processing location. Groups of 10-15 fish were anesthetized...
These data were compiled to test hypotheses regarding drivers of movement of brown trout. Objectives of our study were to test whether the degree of movement varied in response to placement of a weir in Bright Angel Creek, fall timed flooding events, or simply seasonal changes. These data represent summarized capture histories of brown trout in terms of states based on physical locations, data on removal efforts in Bright Angel Creek, and summaries of effort in the mainstem Colorado River. These data were collected at several locations along the Colorado River in Glen and Grand Canyon, including Bright Angel Creek from 2011 to 2018. These data were collected by U.S. Geological Survey, National Park Service, and...
These data were compiled as part of an ecological study of Sonora Mud Turtles and their interaction with non-native turtles at Montezuma Well in Yavapai County, Arizona. The data consist of observations and measurements of individual turtles captured during the study, and support analyses of population size and trends, general condition and health of the turtles, and female reproduction. Principal investigators for the study were Phil Rosen (1983 data), Matthew Malone and Steve Garber (1999 data) and Jeff Lovich and Charles Drost (data from 2007 through 2015). This dataset provides detailed capture data, measurements, and female reproductive status for the Sonora Mud Turtle population at Montezuma Well, which should...
Finite population sampling theory is useful in estimating total population size (abundance) from abundance estimates of each sampled unit (quadrat). We develop estimators that allow correlated quadrat abundance estimates, even for quadrats in different sampling strata. Correlated quadrat abundance estimates based on mark-recapture or distance sampling methods occur when data are pooled across quadrats to estimate, for example, capture probability parameters or sighting functions. When only minimal information is available from each quadrat, pooling of data across quadrats may be necessary to efficiently estimate capture probabilities or sighting functions. We further include information from a quadrat-based auxiliary...
Categories: Publication;
Types: Citation,
Journal Citation;
Tags: Arizona,
Huggins estimator,
Journal of Wildlife Management,
Mexican spotted owl,
New Mexico,
These data represent a set of capture histories of rainbow trout (Oncorhynchus mykiss or RBT) captured in the Colorado River (CR) and(or) detected on the multiplexer array in the Little Colorado River (LCR). Capture trips to the Colorado River occurred in April 2012, July 2012, September 2012, January 2013, April 2013, July 2013, September 2013, January 2014, April 2014, July 2014, and September 2014. Rainbow trout were detected on the PIT array system (MUX) from October 2013 - April 2014.
Types: Citation;
Tags: Arizona,
Colorado River,
Glen Canyon Dam,
Grand Canyon,
Little Colorado River,
An understanding of individuality in animal vocalizations can assist in tracking individuals spatially and temporally, and is particularly useful for species of conservation concern. We determined whether fitz bew vocalizations of the endangered Southwestern Willow Flycatcher (Empidonax traillii extimus) showed vocal individuality, assessed the differences in vocal individuality among three populations, and tested the ability of predictive vocalization models to reidentify individuals. Fitz bew vocalizations were recorded from two populations in Arizona (Roosevelt Lake and San Pedro River) and one in California (Kern River). Individuality was determined using discriminant function analysis (DFA) and trained artificial...
Categories: Publication;
Types: Citation,
Journal Citation;
Tags: The Auk,
bioacoustics,
empidonax traillii extimus,
mark-recapture,
monitoring,
Dispersal can strongly influence the demographic and evolutionary trajectory of populations. For many species, little is known about dispersal, despite its importance to conservation. The Greater Sage-Grouse (Centrocercus urophasianus) is a species of conservation concern that ranges across 11 western U.S. states and 2 Canadian provinces. To investigate dispersal patterns among spring breeding congregations, we examined a 21-locus microsatellite DNA dataset of 3,244 Greater Sage-Grouse sampled from 763 leks throughout Idaho, Montana, North Dakota, and South Dakota, USA, across 7 yr. We recaptured ~2% of individuals, documenting 41 instances of breeding dispersal, with 7 dispersal events of .50 km, including 1 of...
The endangered Indiana bat (Myotis sodalis) has declined dramatically and continuing threats have made it necessary to understand population dynamics and life history throughout the year. Specifically, demographic information (e.g., population size, reproductive success, survival) from the summer range where females raise their young in maternity colonies is difficult to estimate precisely using traditional techniques (such as emergence counts). Further, the familial makeup of maternity colonies is unknown. Genetic mark-recapture methods are increasingly being used to estimate demographic parameters in species where traditional techniques are problematic and can also provide insight into relatedness among individuals....
Categories: Data;
Types: Citation;
Tags: Indiana,
Indianapolis,
Myotis sodalis,
USGS Science Data Catalog (SDC),
United States,
Recent reintroduction of the black-footed ferret (Mustela nigripes) in west-central South Dakota has focused new attention on black-tailed prairie dogs (Cynomys ludovicianus), because prairie dog colonies provide essential habitat for ferrets. Currently, management agencies are assessing prairie dog populations by counting active burrows, a technique that is attracting criticism. We correlated active and total burrow counts with prairie dog mark-recapture population estimates from 12 colonies located in Badlands National Park and adjacent Buffalo Gap National Grassland. We also correlated visual counts of prairie dogs and counts of mounds from aerial photographs with mark-recapture estimates to assess an alternative...
Categories: Publication;
Types: Citation,
Journal Citation;
Tags: Cynomys ludovicianus,
JSTOR,
Mustela nigripes,
South Dakota,
Wildlife Society Bulletin,
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