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This dataset contains information from visual encounter surveys conducted between 2012 and 2016 by USGS as part of an ongoing Oregon spotted frog (Rana pretiosa) monitoring effort in the Oregon Cascade Mountain Range. We surveyed 91 sites using a rotating frame design in the Klamath and Deschutes Basins, Oregon, which encompass most of the species' core extant range. Data consist of spotted frog counts aggregated by date, location, and life stage, as well as data on environmental conditions at the time of each survey.
Categories: Data;
Tags: Aquatic ecology,
Cascade Range,
Deschutes County,
Klamath County,
Lane County,
***This dataset is superseded by Adams, M.J., Pearl, C.A., McCreary, B., Galvan, S.K., and Rowe, J.C., 2019, Oregon Spotted Frog (Rana pretiosa) Monitoring at Jack Creek 2015-2018 (final): U.S. Geological Survey data release, https://doi.org/10.5066/P9L2XC5B.*** This dataset contains information from mark-recapture surveys conducted in 2015 by USGS as part of an ongoing Oregon spotted frog (Rana pretiosa) monitoring effort at Jack Creek, Klamath County, Oregon. Data consist of spotted frog counts aggregated by date, location, life stage, and sex, as well data on environmental conditions at the time of each survey.
This layer depicts the status, or degree of disturbance, to plant communities on the main Hawaiian Islands. To more precisely identify areas where native species may presently be found, a map was generated that considers the following three categories of habitat quality: High, areas dominated by native vegetation; Medium, areas dominated by nonnative vegetation; and Low, highly modified landscapes. The primary source for mapping these three categories is the HIGAP land-cover classification (Gon, 2006). The High category includes all HIGAP land-cover classes that are considered to be either native dominated or mixed native and nonnative in order to represent those areas that have substantial native-species composition....
Categories: Data,
Publication;
Types: ArcGIS REST Map Service,
ArcGIS Service Definition,
Citation,
Downloadable,
Map Service;
Tags: Hawaii,
Hawaiian Islands,
cover type conversion,
ecosystem disturbance,
invasive species,
These tables serve as input data for hierarchical models investigating interactions between raven density and Greater Sage-grouse nest success. Observations were recorded over an 11 year time period, spanning from 2009 through 2019. The model is run in JAGS via R, the code is publicly available via the U.S. Geological Survey's GitLab (O'Neil et al. 2023). We recommend not making any changes or edits to the tables unless the user is experienced with hierarchical modeling. References: O'Neil, S.T., Coates, P.S., Webster, S.C., Brussee, B.E., Dettenmaier, S.J., Tull, J.C., Jackson, P.J., Casazza, M.L., and Espinosa, S.P., 2023, Code for a hierarchical model of raven densities linked with sage-grouse nest survival...
These datasets were developed to represent the geographic distribution of Plantago ovata in the Mojave Desert. This data release consists of two raster spatial layers (GeoTIFF) reflecting predicted habitat for the species within the Mojave Desert and the standard error in predictions. The habitat layer (raster dataset) is a continuous probability distribution of suitable habitat where values range from 0 (very low probability of species occurrence) to 1 (very high probability of species occurrence). An additional raster dataset provides the standard error in habitat predictions calculated among alternative habitat models: users should evaluate both the habitat and standard error datasets and exercise prudence when...
We used a hierarchical Bayesian modeling framework to estimate resource selection functions and survival for early and late brood-rearing stages of sage-grouse in relation to a broad suite of habitat characteristics evaluated at multiple spatial scales within the Great Basin from 2009 to 2019. Sage-grouse selected for greater perennial grass cover, higher relative elevations, and areas closer to springs and wet meadows during both early and late brood-rearing. Terrain characteristics, including heat load and aspect, were important in survival models, as was variation in shrub height. We also found strong evidence for higher survival for both early and late broods within previously burned areas, but survival within...
Ranked habitat classes for sage-grouse brood-rearing productivity at each 90 m pixel. Habitat classes represent areas where high brood selection and high brood survival intersected, whereas the lowest ranks represent areas where high brood habitat selection intersected with the low brood survival. Hierarchical models of brood selection and survival were fit to landscape covariates within a Bayesian modeling framework in Nevada and California from 2009 - 2017 to develop spatially explicit information about brood habitat selection and survival.
Preserving native species diversity is fundamental to ecosystem conservation. Selecting appropriate native species for use in restoration is a critical component of project design and may emphasize species attributes such as life history, functional type, pollinator services, and nutritional value for wildlife. Determining which species are likely to establish and persist in a particular environment is a key consideration. Species distribution models (SDMs) characterize relationships between species occurrences and the physical environment (e.g., climate, soil, topographic relief) and provide a mechanism for assessing which species may successfully propagate at a restoration site. In conjunction with information...
Categories: Data;
Types: Downloadable,
GeoTIFF,
Map Service,
Raster;
Tags: Arizona,
California,
Mojave,
Nevada,
Utah,
Preserving native species diversity is fundamental to ecosystem conservation. Selecting appropriate native species for use in restoration is a critical component of project design and may emphasize species attributes such as life history, functional type, pollinator services, and nutritional value for wildlife. Determining which species are likely to establish and persist in a particular environment is a key consideration. Species distribution models (SDMs) characterize relationships between species occurrences and the physical environment (e.g., climate, soil, topographic relief) and provide a mechanism for assessing which species may successfully propagate at a restoration site. In conjunction with information...
Categories: Data;
Types: Downloadable,
GeoTIFF,
Map Service,
Raster;
Tags: Arizona,
California,
Mojave,
Nevada,
Utah,
Preserving native species diversity is fundamental to ecosystem conservation. Selecting appropriate native species for use in restoration is a critical component of project design and may emphasize species attributes such as life history, functional type, pollinator services, and nutritional value for wildlife. Determining which species are likely to establish and persist in a particular environment is a key consideration. Species distribution models (SDMs) characterize relationships between species occurrences and the physical environment (e.g., climate, soil, topographic relief) and provide a mechanism for assessing which species may successfully propagate at a restoration site. In conjunction with information...
Categories: Data;
Types: Downloadable,
GeoTIFF,
Map Service,
Raster;
Tags: Arizona,
California,
Mojave,
Nevada,
Utah,
Annotated bibliography of grazing effects on amphibians and their habitats (ver. 2.0, February 2022)
This database contains literature citations and associated summaries pertaining to livestock grazing effects on amphibians and their habitats, with an emphasis on the Oregon spotted frog (Rana pretiosa) and other listed/sensitive wetland-breeding amphibians in the western United States. This is not meant to be an exhaustive list, nor did we perform a systematic meta-analysis; rather, literature records were included based on topical relevance. *HINT: If you are looking for the database SEARCH TOOL, scroll down to 'Attached Files' and download 'Annotated_bibliography_with_search_tool.accdb.' Open the database file to enter the search form.* This data release supersedes Rowe, J.C., Pearl, C.A., Adams, M.J., and McCreary,...
Categories: Data;
Tags: Aquatic Biology,
Ecology,
Land Use Change,
USGS Science Data Catalog (SDC),
Wildlife Biology,
OBIS-USA brings together marine biological occurrence data – recorded observations of identifiable marine species at a known time and place, collected primarily from U.S. Waters or with U.S. funding. Coordinated by the Science Analytics and Synthesis (SAS) Program of the United States Geological Survey (USGS), OBIS-USA, strives to meet national data integration and dissemination needs for marine data about organisms and ecosystems. OBIS-USA is part of an international data sharing network (Ocean Biodiversity Information System, OBIS) coordinated by the Intergovernmental Oceanographic Commission, of UNESCO (United Nations Educational, Science and Cultural Organization) International Oceanographic Data and Information...
This table contains Carbon and Nitrogen stable isotope data for Silver Chub (Macrhybopsis storeriana), dreissenid mussels, and Hexagenia spp. mayflies from western Lake Erie in 2014. Samples were collected between May and September 2014 as part of both routine monitoring and a lake-wide coordinated monitoring effort. Silver Chub were collected in trawls; Hexagenia and Dreissenids were captured in benthic samples and taken from Silver Chub diets.
Categories: Data;
Tags: Lake Erie,
USGS Science Data Catalog (SDC),
biota,
invasive species,
life sciences,
We used visual surveys to document the presence of all life stages of Cascades frog (Rana cascadae) at historically occupied sites. We surveyed 67 sites 1-2 times between May and August of 2018 and 2019. This effort was a continuation of 2001-2004 surveys conducted at the same site pool. This dataset includes counts of amphibians, reptiles, and fish observed during each site survey, as well as habitat covariates.
Categories: Data;
Tags: Aquatic Biology,
Clackamas County,
Deschutes County,
Douglas County,
Ecology,
The invasion of 40 million hectares of the American West by cheatgrass (Bromus tectorum L.) has caused widespread modifications in the vegetation of semi-arid ecosystems and increased the frequency of fires. In addition to well-understood mechanisms by which cheatgrass gains competitive advantage, it has been implicated in reducing arbuscular mycorrhizal fungi (AMF) abundance and taxa diversity. We evaluated this possibility at a high elevation site in a two-pronged approach. To test whether cheatgrass changed native AMF communities in ways that affected subsequent native plant growth, we grew cheatgrass and native plants in native soils and then planted native plants into these soils in a greenhouse experiment....
Categories: Publication;
Types: Citation,
Journal Citation;
Tags: Rangeland Ecology & Management,
Rocky Mountain National Park,
arbuscular mycorrhizal fungi,
cheatgrass,
invasions,
This dataset contains information from mark-recapture and egg mass surveys conducted 2015-2018 by USGS as part of an ongoing Oregon spotted frog (Rana pretiosa) monitoring effort at Jack Creek, Klamath County, Oregon. Data consist of spotted frog counts (handled by surveyors) aggregated by date, location, life stage, and sex, as well as data on environmental conditions at the time each survey. Note that due to updates in access permissions, surveyed area within each site varies over time. Thus, counts are not comparable among year, as surveyed area was not held constant.
The polygon (vector) feature class represents locatable mineral resource assessment tracts (tracts of land) associated with the Department of the Interior (DOI) Sagebrush Focal Areas (SFAs) in Montana, Wyoming and Utah, central Idaho, and the Oregon-Nevada-Idaho border area. The mineral-resources tracts are geographic areas that were assessed by the USGS and were determined to be geologically favorable for a deposit type of interest to a depth of 1 kilometer. Qualitative assessment methods outlined by the Bureau of Land Management (BLM) were used to develop tract boundaries and to assign a level of mineral-resource potential and certainty to each tract. The general process included (1) identifying possible mineral...
Categories: Data;
Types: ArcGIS REST Map Service,
ArcGIS Service Definition,
Citation,
Downloadable,
Map Service;
Tags: Idaho (ID),
Montana (MT),
Nevada (NV),
Oregon (OR),
USGS Science Data Catalog (SDC),
This dataset contains Sr:Ca of water and fin ray samples of native fish to evaluate upstream fish passage through a navigation lock in the Des Plaines River (Brandon Roads Lock and Dam). Fin ray samples from several native fish taxa (catostomids, ictalurids, centrarchids, and lepisosteids) were collected in two river reaches downstream of Brandon Roads Lock and Dam, and in a river reach upstream of Brandon Roads Lock and Dam. Fin ray Sr:Ca derived from microchemistry analyses of fin ray materials from a laser ablation transect is included as both edge values and entire transect (including edge). Edge values of Sr:Ca were used to characterize chemical signatures of residency for each of the rivers and make comparisons...
Categories: Data;
Tags: Aquatic Biology,
Asian carp,
Brandon Roads Lock and Dam,
Brandon Roads Lock and Dam,
Catostomidae,
These datasets were developed to represent the genetic diversity, population structure, and geographic distribution of Plantago ovata in the Mojave Desert. This data release consists of two tab-delimited text files representing the genetic diversity and structure of Plantago ovata (.genepop and .vcf), and two raster spatial datasets (GeoTIFF) reflecting predicted habitat for the species within the Mojave Desert. The genetic datasets record genetic variation at an individual level, with the file structures varying based on the programs within which the files are intended to be edited. Each file contains 13,111 SNPs genotyped in 748 individuals. The genepop file can be viewed in GENEPOP software (Rousset 2008) or...
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Arizona,
Botany,
California,
Genetics,
Mojave,
We evaluated the expected success of habitat recovery in priority areas under 3 different restoration scenarios: passive, planting, and seeding. Passive means no human intervention following a fire disturbance. Under a planting scenario, field technicians methodically plant young sagebrush saplings at the burned site. The seeding scenario involves distributing large amounts of sagebrush seeds throughout the affected area.
Categories: Data;
Types: Downloadable,
GeoTIFF,
Map Service,
Raster;
Tags: biota,
fires,
habitat alteration and disturbance,
human impacts,
native species,
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