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Abundance and Distribution of Fishes in the Northern Sacramento-San Joaquin Delta, California, 2017-2018 (ver. 1.1, December 2019) This dataset includes field data for fishes sampled using gill nets during daylight hours in the Northern Sacramento-San Joaquin Delta, California, USA. This data release includes all measured environmental parameters and fish taxa included in the analysis. First posted - August 19, 2019 (available from author) Revised - December 18, 2019 (version 1.1) Categories: Data, Data Release - Revised; Tags: Aquatic Biology, Aquatic Biology, Cache Slough Complex, California, Ecology, All tags... Fish Ecology, Habitat Restoration, North Delta, Sacramento-San Joaquin Delta, Tidal Wetland, USGS Science Data Catalog (SDC), United States, Wildlife Biology, biota, Fewer tags Mesocarnivore Survey of Lassen Volcanic National Park, Klamath Network, 2017-2018 (ver. 2.0, April 2022) Remote camera stations were set up in Lassen Volcanic National Park from August to October 2017 and June to September 2018 to document occurrence of mesocarnivores and other wildlife. 126 cameras were set up at 32 primary sampling units (clusters of two to four cameras) throughout the park. Random locations for primary sampling units were chosen using a 3-km sampling grid over the park area. The dataset contains all species observed within the study time-frame, the date and time of observation and the number of individuals detected as well as identification for individual locations, cameras and images. Of the three target species of conservation concern (Pacific fisher (Pekania pennanti), Pacific marten (Martes... Categories: Data, Data Release - Revised; Tags: California, Ecology, Forestry, Klamath Monitoring Network, Lassen County, All tags... Lassen Volcanic National Park, Pacific Northwest, Plumas County, Shasta County, Tehama County, USGS Science Data Catalog (SDC), Wildlife Biology, biota, birds, camera survey, carnivores, environment, image collections, insects, mammals, mesocarnivores, wildlife, Fewer tags Fishes of Ryer Island, Suisun Bay, California, 2016-2017 This data set includes field data for fishes sampled using gill nets and otter trawls during daylight hours in and around Ryer Island, Suisun Bay, California. This data release includes all measured environmental parameters and fish taxa included in the analysis. First posted: April 17, 2019 Revised: August 27, 2019 Categories: Data, Data Release - Revised; Tags: Aquatic Biology, Aquatic Biology, California, Ecology, Fish Ecology, All tags... Low Salinity Zone, Ryer Island, Sacramento-San Joaquin Delta, San Francisco Bay Delta, San Francisco Estuary, Suisun Bay, Tidal Wetland, USGS Science Data Catalog (SDC), United States, Water Resources, Wildlife Biology, biota, environment, Fewer tags Total mercury concentrations in dragonfly larvae from U.S. national parks (ver. 9.0, November 2023) Comma-separated values (.csv) file containing data related to mercury concentrations in dragonfly samples from U.S. National Parks collected as part of the Dragonfly Mercury Project (DMP). This data release supersedes Eagles-Smith, C.A., Nelson, S.J., Flanagan-Pritz, C.M., Willacker Jr., J.J., and Klemmer, A.J., 2018, Total mercury concentrations in dragonfly larvae from U.S. national parks (ver. 8.0, December 2022): U.S. Geological Survey data release, https://doi.org/10.5066/P9TK6NPT. Please contact fresc_outreach@usgs.gov for access. Categories: Data, Data Release - Revised; Tags: Acadia National Park, Allegheny Portage Railroad National Historic Site, Amistad National Recreation Area, Apostle Islands National Lakeshore, Appomattox Court House National Historical Park, All tags... Aquatic Biology, Assateague Island National Seashore, Battle Creek Cypress Swamp, Bear Creek Lake Park, Bear Meadows Natural Area, Big Bend National Park, Big Cypress National Preserve, Big Thicket National Preserve, Buffalo National River, Cape Cod National Seashore, Capitol Reef National Park, Carl Sandburg Home National Historic Site, Carlsbad Caverns National Park, Channel Islands National Park, Chattahoochee River National Recreation Area, Chickasaw National Recreation Area, City of Rocks National Reserve, Colorado National Monument, Congaree National Park, Crater Lake National Park, Craters of the Moon National Monument & Preserve, Cuyahoga Valley National Park, Death Valley National Park, Delaware Water Gap National Recreation Area, Denali National Park and Preserve, Devils Tower National Monument, East Inlet Natural Area-Connecticut Lakes Nature Preserve, Ecology, Ell Pond Preserve, Everglades National Park, Fort Larned National Historic Site, Fort Worth Nature Center and Refuge National Natural Landmark, Gateway National Recreation Area, Glacier Bay National Park & Preserve, Glacier National Park, Glen Canyon National Recreation Area, Golden Gate National Recreation Area, Grand Canyon National Park, Grand Portage National Monument, Grand Teton National Park, Great Basin National Park, Great Sand Dunes National Park, Great Smoky Mountains National Park, Gulf Islands National Seashore, Hawaii Volcanoes National Park, Homestead National Monument, Horseshoe Bend National Military Park, Hot Springs National Park, Indiana Dunes National Park, Isle Royale National Park, Jean Lafitte National Historical Park and Preserve, John Day Fossil Beds National Monument, Joshua Tree National Park, Katahdin Woods and Waters National Monument, Katmai National Park and Preserve, Kenai Fjords National Park, Kenilworth Park & Aquatic Gardens, Klondike Gold Rush National Historical Park, Knife River Indian Villages National Historic Site, Lake Clark National Park and Preserve, Lassen Volcanic National Park, Lewis and Clark National Historical Park, Lilley Cornett Woods, Mammoth Cave National Park, Marsh-Billings-Rockefeller National Park, Maurice National Wild and Scenic River, Minute Man National Historical Park, Mississippi National River & Recreation Area, Monocacy National Battlefield, Montezuma Castle National Monument, Mount Rainier National Park, Natchez Trace Parkway and National Scenic Trail, New River Gorge National Park and Preserve, Niobrara National Scenic River, North Cascades National Park, Ocmulgee Mounds National Historical Park, Olympic National Park, Oregon Caves National Monument, Ozark National Scenic Riverway, Padre Island National Seashore, Petersburg National Battlefield, Pictured Rocks National Lakeshore, Pinnacles National Park, Pipestone National Monument, Prince William Forest Park, Pu'ukohola Heiau National Historic Site, Redwood National Park, Richmond National Battlefield Park, Rio Grande Wild & Scenic River, Rock Creek Park, Rocky Mountain National Park, Roosevelt-Vanderbilt National Historic Sites, Saguaro National Park, Saint Croix National Scenic Riverway, Saint-Gaudens National Historic Site, San Juan Island National Historical Park, Santa Monica Mountains National Recreation Area, Sequoia & Kings Canyon National Parks, Shenandoah National Park, Sleeping Bear Dunes National Lakeshore, Sudbury, Assabet & Concord Wild & Scenic Rivers, Tallgrass Prairie National Preserve, Timucuan Ecological Historic Preserve, Tumacacori National Historical Park, Tuzigoot National Monument, USGS Science Data Catalog (SDC), Upper Delaware Scenic and Recreational River, Valles Caldera National Preserve, Voyageurs National Park, Water Quality, Weir Farm National Historical Park, Wekiva Wild & Scenic River, White Mountain National Forest, Wildlife Biology, Wind Cave National Park, Women’s Rights National Historical Park, Yellowstone National Park, Yosemite National Park, Zion National Park, biota, environment, mercury contamination, Fewer tags A comprehensive list of non-native species established in three major regions of the United States: Version 3.0 Note: this dataset has been superseded by this new data product: Simpson, A., Turner, R., Blake, R., Liebhold, A., and Dorado, M., 2021, United States Register of Introduced and Invasive Species: U.S. Geological Survey data release, https://doi.org/10.5066/P95XL09Q. Invasive species are a subset of non-native (or nonindigenous) species, and knowing what species are non-native to a region is a first step to managing invasive species. This is the second update to the dataset "First comprehensive list of non-native species established in three major regions of the United States" supporting a USGS Open File Report by the same name published on 2018-10-17. Version 3.0 of the non-native species list, as of 2020-09-15,... Categories: Data, Data Release - Revised; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Alaska, Aquatic Biology, Botany, Conterminous United States, Ecology, All tags... Environmental Health, Forestry, Hawaii, Information Sciences, Wildlife Biology, Wildlife Disease, introduced species, invasive species, inventory, non-native species, nonindigenous species, species, Fewer tags Anticoagulant rodenticide concentrations in blood and tissue of California condors and turkey vultures (ver. 2.0, May 2023) The dataset includes specifics on liver tissue and blood plasma anticoagulant rodenticide concentrations measured using high-performance liquid chromatography-tandem mass spectrometry. This data release supersedes Herring, G., and Eagles-Smith, C.A., 2022, Anticoagulant rodenticide concentrations in blood and tissue of California condors and turkey vultures: U.S. Geological Survey data release, https://doi.org/10.5066/P9NHPLHX. Please contact fresc_outreach@usgs.gov for access. Categories: Data, Data Release - Revised; Tags: Arizona, California, California condor, Ecology, Oregon, All tags... USGS Science Data Catalog (SDC), Wildlife Biology, anticoagulant rodenticide, avian scavengers, biota, common raven, ecotoxicology, environment, food web, liver tissue, ornithology, plasma, turkey vulture, wildlife biology, Fewer tags Estimated habitat suitability for the American burying beetle using land cover classes in the Southern Plains (ver. 1.1, June 2020) Potentially suitable habitat for the American burying beetle (Nicrophorus americanus) was identified within the Southern Plains. The American burying beetle (ABB) is listed as endangered under the Endangered Species Act, but in 2019 the U.S. Fish and Wildlife Service proposed to reclassify this species as threatened. We applied a deductive model for the ABB that identified potentially suitable habitat using LANDFIRE Existing Vegetation Types (EVT). The habitat model ranked each EVT using one of four categories: (1) favorable; suitable vegetation to support all or critical portions of the ABB life cycle, (2) conditional; favorable only under certain conditions including seasonality of flooding and land management... Categories: Data, Data Release - Revised; Types: Downloadable, GeoTIFF, Map Service, Raster; Tags: American burying beetle, Arkansas, Kansas, LANDFIRE, Missouri, All tags... Nicrophorus americanus, Oklahoma, Southern Plains, Texas, USGS Science Data Catalog (SDC), United States, biota, endangered species, entomology, habitat suitability, habitats, insects, surface disturbance, vegetation, vegetation classification, wildlife biology, Fewer tags Mesocarnivore Survey of Oregon Caves National Monument and Preserve, Klamath Network, 2017 (ver. 2.1, July 2022) Remote camera stations were set up in Oregon Caves National Monument and Preserve from February through April 2017 to document occurrence of mesocarnivores and other wildlife. Fifteen cameras were set up at four primary sampling units (clusters of three to four cameras) throughout the park. Random locations for primary sampling units were chosen using a 3-km sampling grid over the park area. The dataset contains all species observed within the study time-frame, the date and time of observation and the number of individuals detected as well as identification for individual locations, cameras and images. Of the three target species of conservation concern (Pacific fisher (Pekania pennanti), Pacific marten (Martes... Categories: Data, Data Release - Revised; Tags: Ecology, Forestry, Josephine, Josephine County, Klamath Monitoring Network, All tags... Oregon, Oregon Caves National Monument and Preserve, Pacific Northwest, USGS Science Data Catalog (SDC), Wildlife Biology, biota, birds, camera survey, carnivores, environment, image collections, mammals, mesocarnivores, wildlife, Fewer tags Histopathology of zebra finches (Taeniopygia guttata) orally exposed to clothianidin (ver. 2.0, October 2019) This dataset reports select histopathological changes in liver, kidney, gonad, spleen, brain, heart, skeletal muscle, lung, or adrenal gland of zebra finches exposed to 15mg/kg, 18mg/kg, 30mg/kg, 60mg/kg, 75mg/kg, 125mg/kg, or 250mg/kg clothianidin (CTD) (with controls) by gavage, in water, or on millet seed either as a single dose or for 7 days. The goal of the project is to develop a subacute neonicotinoid toxicity model using zebra finches as a model passerine. We have completed two acute toxicity trials using CTD insecticide. Based on these studies, we estimate the no observable effect level (NOAEL) and the lowest observable effect level (LOAEL) for CTD in zebra finches to be 15 and 30 mg/kg body weight, respectively,... Categories: Data, Data Release - Revised; Tags: Environmental Health, Madison, Wisconsin, USGS Science Data Catalog (SDC), Wildlife Biology, clothianidin, All tags... neonicotinoids, zebra finch, Fewer tags Beaver dam locations and beaver activity in the Tualatin Basin, Oregon (ver. 2.0, November 2019) USGS met with 13 local groups and organizations around the Portland, Oregon region to collect information regarding the locations of beaver dams in the Tualatin Basin. The local sources had identified beaver dams between 2011 and 2019, and data were compiled by USGS into an ArcGIS shapefile. Often, the local groups did not know the GPS coordinates of beaver dams, but they had identified beaver-affected reaches during that same time period. Therefore, a second shapefile was created to include the locations of beaver activity (including beaver chews, lodges, and dams) in the Tualatin Basin. The Beaver Dam Locations ArcGIS shapefile shows the known locations of beaver dams in the Tualatin Basin. The Beaver Activity... Categories: Data Release - Revised; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Castor canadensis, Ecology, Hydrogeology, Land Use Change, Oregon, All tags... Tualatin River, USGS Science Data Catalog (SDC), Washington County, Water Resources, Wildlife Biology, beaver, biota, dam, data integration, inlandWaters, natural resource management, watershed management, Fewer tags Potential contaminant sources and other landscape variables summarized for NHDPlus Version 2.1 catchments within the Chesapeake Bay Watershed (ver. 2.0, June 2021) This dataset consists of 262 variables which describe various known and suspected point and non-point sources of contaminants and endocrine disrupting compounds (EDCs) throughout the Chesapeake Bay Watershed. Contaminant data was summarized to the NHDPlus Version 2.1 catchment level (1:100K). Contaminant data summarized span a time range of 2001 to 2016 and include regulated facilities, pesticides, manure and biosolids application data, mercury deposition, animal feeding applications, septic systems, landfills, and land use and land cover. These data are presented in a comma separated file, which includes all variables summarized and the NHDPlus Version 2.1 FEATUREID field (also known as COMID). The FEATUREID field... Categories: Data, Data Release - Revised; Types: Citation; Tags: Aquatic Biology, Chesapeake Bay, Chesapeake Bay Basin, Delaware, Discharge Monitoring Report (DMR), All tags... District of Columbia, Environmental Health, Facility Registry Service (FRS), Geography, Land Use Change, Maryland, New York, Pennsylvania, Remote Sensing, Toxic Release Inventory (TRI), USGS Science Data Catalog (SDC), Virginia, Water Quality, Water Resources, West Virginia, Wildlife Biology, Wildlife Disease, biosolids application, concentrated animal feeding operations (CAFOs), contamination and pollution, geographic information systems, geography, health and disease, human impacts, industrial pollution, land use and land cover, landfills, manure nitrogen and phosphorus, mercury deposition, natural resources, nonpoint-source pollution, pesticide and herbicide contamination, pharmaceutical contamination, phytoestrogens, septic facilities, water quality, water resources, Fewer tags Shasta Salamanders Surveys for the Shasta-Trinity National Forest (ver. 2.0, July 2020) The Shasta salamander (Hydromantes shastae) has been petitioned for listing under the Endangered Species Act. The greatest threat to the species is likely habitat loss that will be caused by the increase in elevation of Shasta Lake that will occur with proposed increases in the height of Shasta Dam to increase water storage capacity and maintain cold water for Chinook salmon (Oncorhynchus tshawytscha). Another potential threat is the fungus Batrachochytrium salamandrivorans, which has not yet been detected in North America but is lethal to related salamanders (Hydromantes strinatii) in Europe (Martel et al. 2014). In addition to these threats, recent genetic evidence suggests that the species as originally petitioned... Categories: Data, Data Release - Revised; Types: Downloadable, Map Service, OGC WFS Layer, OGC WMS Layer, Shapefile; Tags: California, Shasta National Forest, Shasta-Trinity National Forest, Trinity National Forest, USGS Science Data Catalog (SDC), All tags... Wildlife Biology, amphibians, biota, field inventory and monitoring, herpetology, plot sampling, Fewer tags Annual Marbled Murrelet Abundance and Productivity Surveys Off Central California (Zone 6), 1999-2021 (ver. 4.0, May 2022) Since 2017, U.S. Geological Survey, Western Ecological Research Center (USGS WERC) partnered with California State Parks to continue long-term, annual at-sea surveys to estimate at-sea abundance and juvenile (i.e. hatch-year) productivity of Marbled Murrelets (Brachyramphus marmoratus) in U.S. Fish and Wildlife Service Conservation Zone 6 (central California: San Francisco Bay to Monterey Bay). Marbled Murrelets have been listed as Endangered by the State of California and Threatened by the U.S. Fish and Wildlife Service since 1992. Marbled Murrelets have been surveyed at sea off central California since 1995 (Becker et al. 1997), and standardized surveys to estimate abundance and productivity have been conducted... Categories: Data Release - Revised; Tags: At-Sea Abundance, California, Marbled Murrelet, USGS Science Data Catalog (SDC), Wildlife Biology, All tags... birds, birds, distance sampling, environment, field methods, field observation, location, mammals, marine ecosystems, marine mammals, oceans, sampling, seabirds, Fewer tags Mesocarnivore Survey of Lava Beds National Monument, Klamath Network, 2018 (ver. 2.0, April 2022) Remote camera stations were set up in Lava Beds National Monument and Modoc National Forest from January to May 2018 to document occurrence of mesocarnivores and other wildlife. Thirty-three cameras were set up at 12 primary sampling units (clusters of one to four cameras) throughout the park. Potentially suitable habitat occurred in small patches in Lava Beds National Monument with cameras were placed in groups of one, two or three. To allow for more primary sampling units of four cameras, some cameras were installed in neighboring portions of Modoc National Forest. Cameras located in Modoc National Forest are considered part of the Lava Beds National Monument survey for the purposes of this study. The dataset... Categories: Data, Data Release - Revised; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: California, Ecology, Klamath Monitoring Network, Lava Beds National Monument, Modoc, All tags... Modoc National Forest, Pacific Northwest, Siskiyou, USGS Science Data Catalog (SDC), Wildlife Biology, biota, birds, camera survey, carnivores, environment, image collections, mammals, mesocarnivores, wildlife, Fewer tags Oregon spotted frog (Rana pretiosa) observations in Oregon (ver. 5.0, January 2023) This dataset contains information from surveys conducted 2016-2022 by USGS as part of an ongoing Oregon spotted frog (Rana pretiosa) monitoring effort in Oregon. USGS research activities 2016-2022 were divided into seven study design categories: breeding (egg mass counts), mid-level (visual encounter surveys for occupancy monitoring), apex (mark-recapture), telemetry, trapping, water quality (skin microbiome swabbing), and genetics (egg mass embryo or toe-clip tissue samples). Data consist of Oregon spotted frog observations aggregated by date, location, life stage, sex, and project. These data were compiled from multiple studies employing different survey methods, thus we caution users that counts are not directly... Categories: Data, Data Release - Revised; Tags: Aquatic Biology, Aquatic biology, Cascade Range, Deschutes County, Ecology, All tags... Genetics, Klamath County, Lane County, Linn County, Native species, Oregon, Pacific Northwest, Population dynamics, USGS Science Data Catalog (SDC), Wasco County, Water Quality, Wildlife Biology, biota, environment, inlandWaters, Fewer tags Fishes of the Harney Basin revisited: A contemporary assessment of the distribution of fish fauna throughout the Harney Basin from 1990 to 2019 (ver. 2.0, April 2022) We compiled electrofishing and habitat data sampled from 1990 to 2019 in the Harney Basin by the US Geological Survey (USGS), Oregon Department of Fish and Wildlife (ODFW) and the High Desert Partnership (HDP) to describe native and non-native fish distributions and their habitat associations. USGS collected eDNA data in 2019 to refine the known distributions of common carp (Cyprinus carpio). Site transect length, channel width, depth, and gradient were recorded concurrently with fish sampling. Site elevation was derived from statewide digital elevation models (DEM). We used Tableau, a visualization platform, to display fish distributions in the Harney Basin. This data release supersedes Laramie, M.B., Mejia, F.H.,... Categories: Data, Data Release - Revised; Tags: Aquatic Biology, Catlow Valley, Chewaucan, Ecology, Fort Rock, All tags... Goose Lake, Harney Basin, Malheur Lakes, Oregon, USGS Science Data Catalog (SDC), Warner Lakes, Wildlife Biology, biota, electrofishing, environment, environmental DNA, field inventory and monitoring, fish, fish occurrence, ichthyology, inlandWaters, wildlife biology, Fewer tags Okanogan Basin Pacific lamprey eDNA detections and translocations for 2012-2020 (ver. 1.1, April 2022) Prior to the initiation of translocation efforts in 2017, Pacific lamprey (Entosphenus tridentatus) were last documented in the Okanogan river subbasin in 2010. It appears as if lamprey were extirpated in the Okanogan subbasin some time shortly after that. However, until 2017, monitoring and management actions for lamprey were minimal in the Okanogan subbasin. This lack of monitoring has resulted in a large gap in understanding of the recent historical status of Pacific lamprey distribution throughout the Okanogan subbasin. Recent (beginning in 2017) translocation efforts have helped to rebound or reestablish lamprey in the Okanogan subbasin. Analysis of archived eDNA samples from the Okanogan river and its tributaries... Categories: Data, Data Release - Revised; Tags: Aquatic Biology, British Columbia, Columbia Basin, Ecology, Entosphenus tridentatus, All tags... Okanogan River, USGS Science Data Catalog (SDC), Washington, Wildlife Biology, biota, eDNA, environment, environmental DNA, environmental DNA, inlandWaters, lamprey, migratory species, translocation, Fewer tags