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Poultry Feeding Operations on the Delaware, Maryland, and Virginia Peninsula from 2016 to 2017 Data release contains two shapefiles related to poultry houses on the Delmarva Peninsula (Delaware, Eastern Shore Maryland and, Eastern Shore Virginia). One dataset is a polygon shapefile representing 6013 poultry houses identified using 2016 and 2017 aerial imagery from the U.S. Department of Agriculture's National Aerial Imagery Program (NAIP). The second dataset is a point shapefile of inactive houses which displayed similar characteristics to the active houses except were overgrown or in a state of disrepair (in some cases only the building's footprint remains). Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: CAFO, Chesapeake Bay, Chicken, Delaware, Delmarva, All tags... Eastern shore Maryland, Eastern shore Virginia, Geography, Land Use Change, Maryland, Poultry, Poultry Houses, USGS Science Data Catalog (SDC), Virginia, Water Resources, Wildlife Disease, farming, inlandWaters, Fewer tags Disruption of Francisella noatunensis orientalis pdpA gene results in virulence attenuation and protection in zebrafish Several Francisella spp. including F. noatunensis are regarded as important emerging pathogens of wild and farmed fish. However, very few studies have investigated the virulence factors that allow these bacterial species to be pathogenic in fish. The Francisella Pathogenicity Island (FPI) is a well-described, gene-dense region encoding major virulence factors for the genus Francisella. PdpA is a member of the pathogenicity determining protein genes encoded by the FPI that are implicated in the ability of the mammalian pathogen, F. tularensis, to escape and replicate in infected host cells. Using a sacB suicide approach, we generated pdpA knockouts to address the role of PdpA as a virulence factor for F. noatunensis.... Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Aquatic Biology, USGS Science Data Catalog (SDC), Water Quality, Water Resources, Wildlife Biology, All tags... Wildlife Disease, Fewer tags USGS Earthmap Capacity Assessment Dataset The U.S. Geological Survey provides a wide range of scientific information to an even wider group of stakeholders. Understanding what capacities are needed and if and or where these capacities exist across the USGS landscape is critical in moving science to the next level of use, implementation, and visualization. The concept behind the groups organized to conduct and interpret the survey that collected these data took advantage of the USGS’s position as a science organization with expertise spanning a wide range of science disciplines, stakeholders, and responsibilities. A survey was conducted of USGS employees (Sep 20-Nov 20) to get a current sample of the capacities that exist across the USGS. Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Aquatic Biology, Botany, Climatology, Ecology, Economic Geology, All tags... Energy Resources, Environmental Health, Forestry, Genetics, Geochemistry, Geography, Geomorphology, Geophysics, Glaciology, Hydrology, Information Sciences, Land Use Change, Limnology, Marine Geology, Mineral Resources, Planetary Sciences, Remote Sensing, Sedimentology, Seismology, Soil Sciences, Stratigraphy, Structural Geology, USGS Science Data Catalog (SDC), United States, Volcanology, Water Quality, Water Resources, Wildlife Biology, Wildlife Disease, capability, capacity, survey, Fewer tags Serology, survival, and detection of rabies data from vaccination trials in the common vampire bat (Desmodus rotundus) using a recombinant raccoon poxvirus-vectored mosaic rabies vaccine candidate This data set provides biological information from of a captive colony of common vampire bats (wild-caught and born in captivity) that were part of an experimental study on vaccination. It includes results obtained from different assays: RT-PCR, serum neutralization, Rabies direct-fluorescent antibody test, performed periodically during the study (Sep 2018 – May 2020). Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Rabies, San Luis Potosi, Mexico, Serology, USGS National Wildlife health Center, Madison, WI, USA, USGS Science Data Catalog (SDC), All tags... Wildlife Disease, biota, shedding, survival, vaccination, vaccine treatment, vampire bats, wildlife disease, Fewer tags A comprehensive list of non-native species established in three major regions of the United States: Version 3.0 Note: this dataset has been superseded by this new data product: Simpson, A., Turner, R., Blake, R., Liebhold, A., and Dorado, M., 2021, United States Register of Introduced and Invasive Species: U.S. Geological Survey data release, https://doi.org/10.5066/P95XL09Q. Invasive species are a subset of non-native (or nonindigenous) species, and knowing what species are non-native to a region is a first step to managing invasive species. This is the second update to the dataset "First comprehensive list of non-native species established in three major regions of the United States" supporting a USGS Open File Report by the same name published on 2018-10-17. Version 3.0 of the non-native species list, as of 2020-09-15,... Categories: Data, Data Release - Revised; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Alaska, Aquatic Biology, Botany, Conterminous United States, Ecology, All tags... Environmental Health, Forestry, Hawaii, Information Sciences, Wildlife Biology, Wildlife Disease, introduced species, invasive species, inventory, non-native species, nonindigenous species, species, Fewer tags Ungulate Migrations of the Western United States, Volume 4 This is the data archive for the publication Ungulate Migrations of the Western United States, Volume 4 and includes the collection of GIS map files that are mapped and described in the report. These map files are meant to provide a common spatial representation of the mapped migrations and seasonal ranges. This data release provides the means for ungulate migrations to be mapped and planned for across a wide variety of landscapes where they occur. Due to data sharing constraints of participating agencies, not all the files that underlie the mapped migrations included in the report have been released. Data in this archive can be downloaded two ways. To download by individual herd/range, clicking on child item pages... Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Ecology, USGS Science Data Catalog (SDC), Wildlife Biology, Wildlife Disease Predicted daily elk abortion events in southern GYE 2010, 2012, 2014 Using data from 288 adult and yearling female elk that were captured on 22 Wyoming winter supplemental elk feedgrounds and monitored with GPS collars, we fit Step Selection Functions (SSFs) during the spring abortion season and then implemented a master equation approach to translate SSFs into predictions of daily elk distribution for 5 plausible winter weather scenarios (from a heavy snow, to an extreme winter drought year). We then predicted abortion events by combining elk distributions with empirical estimates of daily abortion rates, spatially varying elk seroprevalence, and elk population counts. Here we provide the predicted abortion events on a daily basis at a 500m resolution for the 5 different weather... Categories: Data; Types: Citation, Downloadable, GeoTIFF, Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service, Raster; Tags: Brucella abortus, Cervus canadensis, Grand Teton National Park, Jackson, Lincoln, All tags... National Elk Refuge, Sublette, Teton, Wyoming, biota, brucellosis, cattle risk, daily abortion risk, disease transmission, elk, mammals, predictions, space use, step selection function, ungulate, wildlife disease, Fewer tags United States Register of Introduced and Invasive Species (US-RIIS) (THIS VERSION HAS BEEN SUPERSEDED by US-RIIS V2.0, November 2022, available at https://doi.org/10.5066/P9KFFTOD) Introduced (non-native) species that becomes established may eventually become invasive, so tracking introduced species provides a baseline for effective modeling of species trends and interactions, geospatially and temporally. The United States Register of Introduced and Invasive Species (US-RIIS) is comprised of three lists, one each for Alaska (AK, with 532 records), Hawaii (HI, with 6,075 records), and the conterminous United States (L48, with 8,657 records). Each list includes introduced (non-native), established (reproducing) taxa that: are, or may become, invasive (harmful) in the locality; are... Categories: Data; Types: Data, Downloadable, Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Alaska (AK), Aquatic Biology, Botany, Conterminous United States (L48), Ecology, All tags... Environmental Health, Forestry, Hawaii (HI), USGS Science Data Catalog (SDC), Wildlife Biology, Wildlife Disease, alien species, database, exotic species, introduced species, invasive species, non-native species, nonindigenous species, species checklist, species list, superseded, Fewer tags Supporting data: Spatial network clustering reveals elk population structure and local variation in prevalence of chronic wasting disease at Wind Cave National Park, 2005--18 These data were used for preparation of Sargeant et al. (2021), "Spatial network clustering reveals elk population structure and local variation in the prevalence of chronic wasting disease." They include locations of elk that were monitored with global positioning system collars at Wind Cave National Park, South Dakota (WICA) during 2005--08 and 2011--13; coordinates of a polygon describing the boundary of WICA; and results of tests for chronic wasting disease for elk culled at WICA during 2016--18. Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Custer County, Ecology, USGS Science Data Catalog (SDC), Wildlife Biology, Wildlife Disease, All tags... Wind Cave National Park, chronic wasting disease, statistical analysis, wildlife disease, wildlife population management, Fewer tags Confirmed cases of snake fungal disease in historical museum specimens Snake fungal disease (SFD) represents a conservation threat to wild snake populations. The disease was reported in North America early in the 21st century, but the history of SFD has not been investigated. We examined museum specimens and confirmed cases of SFD based on clinical signs, histopathologic lesions, and detection of the causative agent Ophidiomyces ophidiicola. The first confirmed cases of SFD in these specimens was >50 years prior to the disease’s reported emergence. Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Morehead State University Museum (Morehead, Kentucky), U.S. Geological Survey, National Wildlife Health Center (Madison, Wisconsin), USGS Science Data Catalog (SDC), University of Wisconsin Zoological Museum (Madison, Wisconsin), Wildlife Disease, All tags... biota, fungal disease, museum collection, reptile disease, snake, Fewer tags Multispectral and visual photogrammetric data collected via sUAS: Back Bay National Wildlife Refuge, Virginia, July 2018 The U.S. Geological Survey collected multispectral and visible light imagery via a quadcopter, small unoccupied aircraft system (sUAS) deployed near Ashville Bridge Creek in Virginia Beach, VA. Approximately 0.25 sq mi surrounding U.S.Fish and Wildlife Service (USFWS) Back Bay National Wildlife Refuge along Ashville Bridge Creek approximately 0.5 mi south of Lotus Garden Park on July 17 and 18, 2018. Photos were collected at a height of 400ft above ground level (AGL) with approximately 70% frontlap between photos and approximately 30% sidelap between survey lines. Multispectral images were collected in a tif format using a Micasense RedEdge M with a Ground Sample Distance of 8.2 cm/pixel, visible light images were... Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Ashville Bridge Creek, Back Bay National Wildlife Refuge, City of Virginia Beach, Ecology, Environmental Health, All tags... Geomorphology, Remote Sensing, UAS, UAV, USGS Science Data Catalog (SDC), Virginia, Water Resources, Wildlife Biology, Wildlife Disease, aerial photography, coastal wetland, drone, image collections, imageryBaseMapsEarthCover, multispectral imaging, remote sensing, sUAS, unmanned aircraft system, unoccupied aircraft system, visible light imaging, Fewer tags Domoic acid and saxitoxin in seabirds from California and Rhode Island 2015-2017 As harmful algal blooms (HABs) increase in magnitude and duration worldwide, they are becoming an expanding threat to marine wildlife. Over the past decade, domoic acid (DA) and saxitoxin (STX) have been increasingly problematic bicoastally in the United States. We investigated pooled seabird mortality data from opportunistic sampling events between 2007-2018, across three states, to examine the patterns and role of DA and STX in seabird mortality events from the continental United States. Patterns in DA and STX levels and affected tissue type were reviewed, and two specific accounts of localized and pervasive event types were examined. There has been increased toxin detection with expanded tissue testing during... Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: California, Rhode Island, USGS Science Data Catalog (SDC), Wildlife Disease, algal blooms, All tags... biota, domoic acid, hazards, saxitoxin, seabird, Fewer tags Prevalence of West Nile virus in migratory birds during spring and fall migration, 2001-2003 To investigate the role of migratory birds in the dissemination of West Nile virus (WNV), we measured the prevalence of infectious WNV and specific WNV neutralizing antibodies in birds, principally Passeriformes, during spring and fall migrations in the Atlantic and Mississippi flyways from 2001-2003. Blood samples were obtained from 13,403 birds, representing 133 species. Specific WNV neutralizing antibody was detected in 254 resident and migratory birds, representing 39 species, and was most commonly detected in northern cardinals ( Cardinalis cardinalis ) (9.8%, N = 762) and gray catbirds ( Dumetella carolinensis ) (3.2%, N = 3188). West Nile virus viremias were detected in 19 birds, including 8 gray catbirds,... Categories: Data; Types: Citation, Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Atlantic migratory bird flyway, Mississippi migratory bird flyway, USGS Science Data Catalog (SDC), United States, birds, All tags... disease vectors, flyways, migration (organisms), viruses, wildlife, wildlife disease, zoonotic disease, Fewer tags Carcass weights, 28S rRNA alignment file and parasite sample vouchers collected from California tiger salamanders (Ambystoma californiense) CTS and Santa Cruz long-toed salamander (Ambystoma macrodactylum croceum) SCLT from Prospect or Ellicott Pond, on Ellicott Slough National Wildlife Refuge, California U.S.A. recorded September 11, 2019 Animal identification number, weight in grams for carcasses of California tiger salamanders (Ambystoma californiense) CTS and Santa Cruz long-toed salamander (Ambystoma macrodactylum croceum) SCLT from Prospect or Ellicott Pond, on Ellicott Slough National Wildlife Refuge, California U.S.A. submitted to U.S. Geological Survey, National Wildlife Health Center (NWHC) for determination of cause of death. NWHC Case 29381. MSF Sequence file used to construct a phylogenetic tree. Sequences were generated from samples at NWHC (Px) and using BLAST (https://blast.ncbi.nlm.nih.gov/Blast.cgi) they were compared for base pair similarities with publicly available sequences from GenBank. Sequences selected for the Multi Sequence... Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: California tiger salamanders, Ellicott Slough National Wildlife Refuge, Ribeiroia ondatrae, Santa Cruz long-toed salamander, U.S. Geological Survey, National Wildlife Health Center, Madison, Wisconsin, All tags... USGS Science Data Catalog (SDC), Wildlife Disease, biota, parasites, Fewer tags Toxicity of potassium chloride, active compound in the molluscicide potash, on salmonid fishes and their forage base (Leetown Science Center, 2018). The data is supplemental to the 2018 USGS Open File Report, "An evaluation of the acute and chronic toxicity of potassium chloride, active compound in the molluscicide potash, on salmonid fishes and their forage base". This research was performed as a Science Support Partnership (SSP) study with USFWS in order to evaluate potential lethal and sublethal impacts of potassium chloride on salmonid fishes and selected invertebrate forage. Files in this data set describe blood chemistry parameters, plasma osmolality and cortisol, gill chloride cell abundance, and fish total body weight and total length for specimens from each of the two salmonid species tested (brook trout, Salvelinus fontinalis, and Chinook salmon, Oncorhynchus... Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Environmental Health, Leetown Science Center, USGS Science Data Catalog (SDC), Wildlife Disease, aquatic biology, All tags... invasive species, pathology, Fewer tags Elk GPS collar data in southern GYE 2007-2015 288 adult and yearling female elk were captured on 22 Wyoming winter supplemental elk feedgrounds and monitored with GPS collars during the brucellosis risk period (February – July) from 2007 to 2015. There were 4 to 64 individual elk per feedground and each elk was monitored for 1 to 2 years. Here we provide the unique identifier for each individual elk, the GPS location of the elk, the date/time stamp of the GPS location, and the feedground the elk was captured on in Wyoming. Categories: Data; Types: Citation, Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Cervus canadensis, GPS data, Grand Teton National Park, Jackson, Lincoln, All tags... National Elk Refuge, Sublette, Teton, Wyoming, biota, cattle risk, elk, location, mammals, movement, space use, ungulate, wildlife disease, Fewer tags Influenza A virus detected from bivalves in waterfowl habitat of the Delmarva Peninsula This data set includes information pertaining to 300 bivalve mollusk tissue samples collected from mollusk specimens from waters in eastern Maryland on the Delmarva Peninsula. Data includes source location, species, morphometric data, and IAV matrix gene detection status for the bivalve samples collected and analyzed in the associated study. Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Chesapeake Bay, Delmarva Peninsula, Environmental Health, USGS Science Data Catalog (SDC), Wildlife Biology, All tags... Wildlife Disease, avian influenza, mollusks, Fewer tags Non-listed disease report to OIE (World Organisation for Animal Health) for the 1st semester of 2019 As a member of the World Organisation for Animal Health (OIE), and the reporting authority for the United States, the USGS National Wildlife Health Center (NWHC) is responsible for reporting wildlife disease outbreaks that involve diseases which are not OIE-listed (https://www.oie.int/wahis_2/public/wahidwild.php# ). These outbreaks are to be reported on a semesterly basis via OIE’s WAHIS-Wild reporting system. The data fields described within are based on those in WAHIS-Wild. Since OIE’s reporting mechanism is based primarily on domestic and agricultural animals, several of the variables are not applicable to wildlife (i.e. vaccination, slaughtered, etc.). In an effort to use a consistent data source that is broad... Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: USGS Science Data Catalog (SDC), United States, Wildlife Disease, World Organisation for Animal Health (OIE), biota, All tags... wildlife disease, Fewer tags Models describing the distribution of chickens, ducks, and geese in China This data release provides models detailing previous efforts to understand the distribution of domestic poultry throughout China. These data support a previous USGS publication. Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: China, Ecology, USGS Science Data Catalog (SDC), Wildlife Biology, Wildlife Disease, All tags... biota, poultry distribution, Fewer tags Status and Trends of North American Bats Summer Occupancy Analysis 2010-2019 Data Release This data release contains the results from the North American Bat Monitoring Program's report titled 'Status and Trends of North American Bats Summer Occupancy Analysis 2010-2019'. Specifically, these data include tabular data and geospatial data for the species-specific results related to the status and trends of 12 bat species at multiple spatial scales including: 10 km x 10 km grid cells, state/province/territories, and range-wide across the geographic extent of monitoring data for each species (i.e., across 'modeled species ranges'). They were produced using an analytical pipeline supported by web-based infrastructure for integrating continental scale bat monitoring data (stationary acoustic, mobile acoustic,... Categories: Data; Types: Downloadable, Map Service, OGC WFS Layer, OGC WMS Layer, Shapefile; Tags: Alaska, Bats, Biota, Canada, Continental United States, All tags... North America, Occupancy, Status, Trend, USGS Science Data Catalog (SDC), Wildlife Biology, Wildlife Disease, biota, Fewer tags 1 2 »