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This dataset provides timeseries data on water quality and quantity, as collected or computed from outside sources. The format is many tables with one row per time series observation (1 tab-delimited file per site-variable combination, 1 zip file per site). This compilation of data is intended for use in estimating or interpreting metabolism. Sites were included if they met the initial criteria of having at least 100 dissolved oxygen observations and one of the accepted NWIS site types ('ST','ST-CA','ST-DCH','ST-TS', or 'SP'). This dataset is part of a larger data release of metabolism model inputs and outputs for 356 streams and rivers across the United States (https://doi.org/10.5066/F70864KX). The complete release...
Abstract The processes and biomass that characterize any ecosystem are fundamentally constrained by the total amount of energy that is either fixed within or delivered across its boundaries. Ultimately, ecosystems may be understood and classified by their rates of total and net productivity and by the seasonal patterns of photosynthesis and respiration. Such understanding is well developed for terrestrial and lentic ecosystems but our understanding of ecosystem phenology has lagged well behind for rivers. The proliferation of reliable and inexpensive sensors for monitoring dissolved oxygen and carbon dioxide is underpinning a revolution in our understanding of the ecosystem energetics of rivers. Here, we synthesize...
Categories: Publication;
Types: Citation
Observed water temperatures from 1980-2019 were compiled for 2,332 lakes in the US. These data were used as training, test, and error-estimation data for process-guided deep learning models and the evaluation of process-based models. The data are formatted as a single csv (comma separated values) file with attributes corresponding to the unique combination of lake identifier, time, and depth. Data came from a variety of sources, including the Water Quality Portal, the North Temperate Lakes Long-Term Ecological Research Project, and digitized temperature records from the MN Department of Natural Resources. This dataset is part of a larger data release of lake temperature model inputs and outputs for these same lakes...
Using predicted lake temperatures from uncalibrated, process-based models (PB0) and process-guided deep learning models (PGDL), this dataset summarized a collection of thermal metrics to characterize lake temperature impacts on fish habitat for 881 lakes. Included in the metrics are daily thermal optical habitat areas and a set of over 172 annual thermal metrics.
This dataset provides input data formatted for use in estimating metabolism. The format is tables of prepared time series inputs (1 tab-delimited file per site, in 1 zip file per site). This dataset is part of a larger data release of metabolism model inputs and outputs for 356 streams and rivers across the United States (https://doi.org/10.5066/F70864KX). The complete release includes: modeled estimates of gross primary productivity, ecosystem respiration, and the gas exchange coefficient; model input data and alternative input data; model fit and diagnostic information; site catchment boundaries and site point locations; and potential predictors of metabolism such as discharge and light availability.
Observed water temperatures from 1980-2018 were compiled for 877 lakes in Minnesota (USA). There were four lakes included in this data release that did not have temperature observations available at the time of compilation or these data existed elsewhere and were unknown to the compilation team. These data were used as training, test, and error-estimation data for process-guided deep learning models and the evaluation of process-based models. The data are formatted as a single csv (comma separated values) file with attributes corresponding to the unique combination of lake identifier, time, and depth. Data came from a variety of sources, including the Water Quality Portal, the North Temperate Lakes Long-Term Ecological...
Daily maximum water temperature predictions in the Delaware River Basin (DRB) can inform decision makers who can use cold-water reservoir releases to maintain thermal habitat for sensitive fish species. This data release contains the forcings and outputs of 7-day ahead maximum water temperature forecasting models that makes predictions at 70 river reaches in the upper DRB. The modeling approach includes process-guided deep learning and data assimilation (Zwart et al., 2023). The model is driven by weather forecasts and observed reservoir releases and produces maximum water temperature forecasts for the issue day (day 0) and 7 days into the future (days 1-7). In combination with data provided in Oliver et al. (2022),...
Water temperature estimates from multiple models were evaluated by comparing predictions to observed water temperatures. The performance metric of root-mean square error (in degrees C) is calculated for each lake and each model type, and matched values for predicted and observed temperatures are also included to support more specific error estimation methods (for example, calculating error in a particular month). Errors for the process-based model are compared to predictions as shared in Model Predictions data since these models were not calibrated. Errors for the process-guided deep learning models were calculated from validation folds and therefore differ from the comparisons to Model Predictions because those...
This dataset provides shapefile outlines of the 2,332 lakes that had temperature modeled as part of this study. The format is a shapefile for all lakes combined (.shp, .shx, .dbf, and .prj files). A csv file of lake metadata is included, which includes lake metadata and all features that were considered for the meta transfer model (not all meta features were used). This dataset is part of a larger data release of lake temperature model inputs and outputs for 2,332 lakes in the U.S. (https://doi.org/10.5066/P9I00WFR).
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: 007,
012,
IA,
IL,
Illinois,
This dataset provides shapefile outlines of the 881 lakes that had temperature modeled as part of this study. The format is a shapefile for all lakes combined (.shp, .shx, .dbf, and .prj files). A csv file of lake metadata is also included. This dataset is part of a larger data release of lake temperature model inputs and outputs for 881 lakes in the U.S. state of Minnesota (https://doi.org/10.5066/P9PPHJE2).
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: MN,
Minnesota,
SD,
South Dakota,
US,
This data release component contains mean daily stream water temperature observations, retrieved from the USGS National Water Information System (NWIS) and used to train and validate all temperature models. The model training period was from 2010-10-01 to 2014-09-30, and the test period was from 2014-10-01 to 2016-09-30.
This item contains data and code used in experiments that produced the results for Sadler et. al (2022) (see below for full reference). We ran five experiments for the analysis, Experiment A, Experiment B, Experiment C, Experiment D, and Experiment AuxIn. Experiment A tested multi-task learning for predicting streamflow with 25 years of training data and using a different model for each of 101 sites. Experiment B tested multi-task learning for predicting streamflow with 25 years of training data and using a single model for all 101 sites. Experiment C tested multi-task learning for predicting streamflow with just 2 years of training data. Experiment D tested multi-task learning for predicting water temperature with...
Categories: Data,
Data Release - Revised;
Tags: US,
USGS Science Data Catalog (SDC),
United States,
deep learning,
environment,
This site is for data releases and information sharing related to the work of the Delaware River Basin (DRB) Integrated Modeling effort conducted within the Water Mission Area (WMA) Integrated Water Prediction (IWP) Program. The results of some of these modeling efforts are also contributing to the DRB base evaluation integrated water availability assessment of the Integrated Water Availability Assessments (IWAAs) Program.
Climate change has been shown to influence lake temperatures in different ways. To better understand the diversity of lake responses to climate change and give managers tools to manage individual lakes, we focused on improving prediction accuracy for daily water temperature profiles in 68 lakes in Minnesota and Wisconsin during 1980-2018. The data are organized into these items: Spatial data - One shapefile of polygons for all 68 lakes in this study (.shp, .shx, .dbf, and .prj files) Model configurations - Model parameters and metadata used to configure models (1 JSON file, with metadata for each of 68 lakes, indexed by "site_id") Model inputs - Data formatted as model inputs for predicting temperature a. Lake...
Predictions are evaluated against observed temperatures.
Provide a space for datasets used in continuous integration testing for R packages or datasets used in training materials to live publicly.
The foundational ecosystem processes of gross primary production (GPP) and ecosystem respiration (ER) cannot be measured directly but can be modeled in aquatic ecosystems from subdaily patterns of oxygen (O2) concentrations. Because rivers and streams constantly exchange O2 with the atmosphere, models must either use empirical estimates of the gas exchange rate coefficient (K600) or solve for all three parameters (GPP, ER, and K600) simultaneously. Empirical measurements of K600 require substantial field work and can still be inaccurate. Three‐parameter models have suffered from equifinality, where good fits to O2 data are achieved by many different parameter values, some unrealistic. We developed a new three‐parameter,...
Categories: Publication;
Types: Citation
This dataset includes model inputs (specifically, meteorological inputs to the predictive models and flags for predicted ice-cover) and is part of a larger data release of lake temperature model inputs and outputs for 2,332 lakes in the U.S. states of North Dakota, South Dakota, Minnesota, Wisconsin, and Michigan (https://doi.org/10.5066/P9PPHJE2).
Multiple modeling frameworks were used to predict daily temperatures at 0.5m depth intervals for a set of diverse lakes in the U.S. states of South Dakota, North Dakota, Minnesota, Wisconsin, and Michigan. Process-Based (PB) models were configured and calibrated with training data to reduce root-mean squared error. Uncalibrated models used default configurations (PB0; see Winslow et al. 2016 for details) and no parameters were adjusted according to model fit with observations. Process-Guided Deep Learning (PGDL) models were deep learning models with an added physical constraint for energy conservation as a loss term. These models were pre-trained with uncalibrated Process-Based model outputs (PB0) before training...
This data release component contains model code and configurations for the LSTM models used to predict stream temperature.
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