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This collection contains the original “raw” survey data that were recorded and transcribed by each observer during the Yukon-Kuskokwim Delta (YKD) Aerial Breeding Pair Survey. Left-front and right-front seat observers recorded data on geese, swans, and cranes since 1985, while data on eiders, ducks, and waterbirds was recorded by a right-rear seat observer since 1989. These raw transcribed data should be used to produce updated quality-control (QC) datasets by running the quality assurance/quality control script “AKaerial.R” whenever the quality control procedures are revised or modified. The data files in this collection were named using the following naming convention: YKD(YKG)YYYY_RawObs_OOOO, where YKD=Duck...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOLOGICAL CLASSIFICATION,
BIRDS,
The document describes the field protocol used during the 2019 field season of the distance sampling pilot project on the Yukon Delta.
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOLOGICAL CLASSIFICATION,
This R code (Nest_Cards_QC.R) is used to process the raw legacy nest card data (1985 - 2019) and produce the quality controlled legacy nest card data for analysis and sharing. This code does not quality control the double searched plots (R2 plots in 1995-99), which is done in the file ‘PrepData.R’. Basic operations include transforming missing value to a common code, transforming other variable to match the data dictionary for nest cards, and resolving non-unique observer initials. The code requires the raw data (“1985-2019_Nest Cards_10-24-19_cleaned.xlsx”) and the table of observer names (“Observer Names_1985-2019_10-24-19.xlsx”). The code writes the QC nest card file “Nest_Cards_1985_2019_QC.csv”. Mostly obseration...
Categories: Data,
Software;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
Observer-specific population indices for the USFWS Region Migratory Bird Management Arctic Coastal Plain study area. The survey consists of low-level aerial observations of waterfowl on a stratified strip transect design. The resulting data frame is several indices separated by observer and calculated using a standard ratio estimator. These data are output from the R package AKaerial and are also available within that package, see https://github.com/USFWS/AKaerial. The data used to produce these estimates contain known errors. Many but not all of these errors are corrected within the R package AKaerial. These data are presented for historical purposes only. See https://github.com/USFWS/ACP-Mapping and comments within...
Categories: Data;
Tags: ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIRDS,
CRANES AND ALLIES,
DUCKS/GEESE/SWANS,
The Yukon-Kuskokwim Delta (YKD) Aerial Breeding Pair Survey provides data on the spring abundance of targeted waterfowl species nesting on the YKD coastal zone in western Alaska. This region supports millions of waterbirds that comprise one of the largest and most important waterfowl breeding grounds in North America, including species of concern such as the red-throated loon (Gavia stellata), emperor goose (Chen canagica), Pacific black brant (Branta bernicla nigricans), common eider (Somateria mollissima), black scoter (Melanitta nigra), long-tailed duck (Clangula hyemalis), and the threatened spectacled eider (Somateria fischeri). The YKD goose, swan, and crane survey was first implemented in 1985 to monitor...
Categories: Data,
Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
This geopackage contains the density strata that were used to create the Alaska Arctic Coastal Plain Aerial Breeding Pair Survey four-year rotating panel design. This file was derived from a mid-1980’s ArcInfo coverage for the North Slope Eider Survey that was produced through the visual interpretation of 1:250,000-scale LANDSAT imagery and the known nesting density waterfowl in the area.
Categories: Data;
Tags: ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOSPHERE,
BIRDS,
DUCKS/GEESE/SWANS,
This collection contains the quality-control (QC) transcribed data from the Yukon-Kuskokwim Delta Aerial Breeding Pair Survey. These QC data were produced from the “raw” data using the R Package “AKaerial.” The raw data were evaluated against the current data standards in the ‘AKaerial data dictionary’ and saved to new QC data files with associated log files that document any changes that were made. From 1985 to 1997, observers recorded bird observations out to 200 meters from the aircraft using continuously running tape players (with a locational accuracy of +/- 5 km), while an automated voice recording survey program (with a spatial accuracy of +/- 0.5 km) was used to record data from 1998 to present. The data...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOLOGICAL CLASSIFICATION,
BIRDS,
R code that takes in the nest capture history data (chdata.csv), reformats it for model fitting in Program Mark via the R package RMark. A series of models of increasing complexity are fit and compared using AIC. Output is written to text files for each model but is generally not used or saved. Code can be run to generate model results and R workspaces/ object to inspect parameter estimates. The primary purpose of this code is to explore model structures for predicting detection and as an attempt to reproduce historically used parameter estimates in past nest plot reports (e.g., Fischer et al. 2017 and earlier). Results from ‘Model 7’ are most similar to detection estimates used in the past.
Categories: Data,
Software;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOLOGICAL CLASSIFICATION,
These are the observer names, observer initials, year, and unique observer number for all observe that collected data on the YKD nest plot project from 1985 to 2019. This data is used with the nest card data to in various ways, but primarily to calculate cumulative observer experience for nest detection rates. This file is also used for quality control and reconciling non-unique observer initials across years.
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
This is the YKD egg observation data reformatted from the nest card data (‘Nest_Cards_1985_2019_QC.csv’). The file eggs.R is used to produce this data set, and then this is further summarized into yearly stats on mean initiation and hatch dates to produce the file yearstats.csv.
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
From 1995 to 1999, a subset of nest plots were searched twice by field crews to estimate nest detection probability by mark-recapture methods. Over the five years, 30 plots were searched twice and over 2700 unique nests were found. From these data, nest detection probability is estimated using a Huggins-type mark recapture model where individual-level covariate effects of nest and observer attributes were estimated. These estimates are then used to predict nest detection rates in other years based on covariates of nests and observers. Nest detection rates are then applied to annual plot search to estimate nest populations for each species in the sampled area.
Categories: Data,
Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
This collection contains the report log files produced by the R Package “AKaerial” when the QC data were created from the raw transcribed data. The QC log files document the quality control process, data standards, and what changes (if any) were made to the QC data compared to the raw data. Each log file was named following the same file naming conventions: SSSYYYY_QCLog_OOOO, where; YKD=Duck data, YKG=Goose data, YYY=Year, and OOO=observer’s first initial and last name.
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOSPHERE,
BIRDS,
DUCKS/GEESE/SWANS,
R code that takes in the nest capture history data (chdata.csv), reformats it for model fitting in the Bayesian MCMC software JAGS via the R package jagsUI. Various generalized linear mixed models are fit using a Huggins two occasion capture history model structure as in Program Mark. A series of models of increasing complexity are fit and compared using DIC. Model text is written to text files for each model but is generally not used or saved. Posteriors are saved as Rworkspaces or written to text files for use in population estimation (nostpop.R). Code can be run to generate model results and R workspaces/objects to inspect parameter estimates. The primary purpose of this code is to compare various mixed model...
Categories: Data,
Software;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOLOGICAL CLASSIFICATION,
This is the YKD nest card data from 1985 to 2019 produced after processing with the R script “Nest_Cards_QC.R”. This file (‘Nest_Cards_1985_2019_QC.csv’) should be used for producing population estimates and any other analyses. This file is what should generally be distributed for YKD nest card data requests.
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
This multi-layer GeoPackage contains the Alaska Arctic Coastal Plain Aerial Breeding Pair Survey design transects from 2007 to present. The original transects were created as shapefiles and imported to this SQLite database. Transects were saved as individual polylines named according to the year they were created (e.g., “main.ACP_2007_Trans,” “main.ACP_2008_Trans,” “main.ACP_2009_Trans,” etc.). These aerial transects were developed systematically from randomly-selected start points and created along constant lines of latitude. The inter-transect spacing in the low, medium, high, and very-high density strata varies so that areas with higher waterfowl density are surveyed more intensively. The current four-year rotating...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOSPHERE,
BIRDS,
DATA ANALYSIS AND VISUALIZATION,
This collection contains the quality-control (QC) transcribed data from the Arctic Coastal Plain Aerial Breeding Pair Survey. These QC data were produced from the “raw” data using the R Package “AKaerial.” The raw data were evaluated against the current data standards in the ‘AKaerial data dictionary’ and saved to new QC data files with associated log files that document any changes that were made. The data files in this collection were named using the following naming convention: ACP_YYYY_QCObs_OOOO, where ACP=Arctic Coastal Plain, YYYY=Year, QCObs=Quality control observations, and OOOO=observer’s first initial and last name. These data contain known errors. These data should not be used except as raw input for...
Categories: Data;
Tags: ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIRDS,
CRANES AND ALLIES,
DUCKS/GEESE/SWANS,
This multi-layer GeoPackage contains the YKD Coastal Zone Survey design transects from 1985 to present. The original transects were imported to this SQLite database structure and saved as individual polylines named according to the year they were created (e.g., “main.YK_1985_Trans,” “main.YK_1986_Trans,” “main.YK_1987_Trans,” etc.). The aerial transects were developed systematically from randomly-selected start points and created along constant lines of latitude. The inter-transect spacing in the low, medium, high, and very-high density strata varies so that areas with higher waterfowl density are surveyed more intensively. Though the overall study area never changed, the YKD Survey design was modified several times,...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOSPHERE,
BIRDS,
DUCKS/GEESE/SWANS,
This R code (eggs.R) inputs the quality controlled nest card data and (1) performs additional quality control on the egg code data, (2) reformat the eggs data into a tidy file of egg observations, (3) summarizes egg data into yearly means of initiation and hatch date based on incubation model, and (4) writes csv files for tidy egg data (eggs.csv) and yearly nest stats (yearstats.csv).
Categories: Data,
Software;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
This data set provides the coordinates of plot centers, the area of each plot, plot type, and search history of the plot. Plots in this data set are linked through the combination of plot number and year provided in this file. Plot search history indicates if a plot was searched for nests. Plot shape and area has varied through time. After 1985, plot were selected by stratified random sampling, and after 1998 by simple random sampling from the area defined in ‘YKD Nest Plot Study Area Boundary.’ Plot shape has also varied but after 1998 was generally 1/4 by 1/2 mile.
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
In 2019 a pilot study was conducted to determine the feasibility of using distance sampling to estimate density and population size of goose and eider nests on the Yukon-Kuskokwim Delta (YKD). Distance sampling (Buckland et al. 2001) is a common and well-understood method to estimate wildlife population size or density, especially for sparse and hard-to-detect populations. A main advantage of distance sampling is that it accounts for imperfect detection and gives precise estimates for a given level of effort relative to other methods. The objectives for the pilot project in 2019 was to (1) determine if distance sampling is feasible on the YKD, (2) determine what aspects of the field protocol need to be changed or...
Categories: Data,
Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
ANIMALS/VERTEBRATES,
BIOLOGICAL CLASSIFICATION,
BIOLOGICAL CLASSIFICATION,
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