Filters: Tags: {"type":"USGS Scientific Topic Keyword","name":"wildlife biology"} (X) > Tags: {"type":"USGS Scientific Topic Keyword","name":"wildlife biology"} (X)
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We illustrate the utility of expert elicitation, explicit recognition of uncertainty, and the value of information for directing management and research efforts for invasive species, using tegu lizards (Salvator merianae) in southern Florida as a case study. We posited a post-birth pulse, matrix model, which was parameterized using a 3-point process to elicit estimates of tegu demographic rates from herpetology experts. We fit statistical distributions for each parameter and for each expert, then drew and pooled a large number of replicate samples from these to form a distribution for each demographic parameter. Using these distributions, we generated a large sample of matrix models to infer how the tegu population...
Categories: Data;
Types: Citation;
Tags: Miami-Dade County, FL,
USGS Science Data Catalog (SDC),
Wildlife Biology,
expert elicitation,
invasive species,
Reported here are the metabarcoding read numbers and biomass data assessed from a fish community in a southern Florida pond in Pinecrest Gardens after invasive species eradication and native restocking in 2017 and 2018 in linear regression models. This dataframe contains the number of fish of each species identified, their measured lengths estimated population surface area, and the number of metabarcoding reads (with SD and COV) for each species observed from the sampling date.
Categories: Data;
Tags: Ecology,
Genetics,
Genetics,
Southern Florida,
USGS Science Data Catalog (SDC),
This dataset uses the ITIS recommended Ortmanniana pectorosa, Conrad, 1834 in place of Actinonaias pectorosa, which was used in the Richard et al. 2020 manuscript. Biologists monitoring freshwater mussel (Order Unionida) populations rely on behavioral, often subjective, symptoms to identify “sick” or stressed animals, such as gaping valves and slow response to probing and lack clinical indicators to support a diagnosis. As part of a multi-year study to investigate causes of reoccurring mortality of pheasantshell (Ortmanniana pectorosa, Conrad 1834) in the Clinch River, Virginia and Tennessee, USA, we analyzed the hemolymph metabolome of a subset of mussels from the 2018 sampling period. Mussels at the mortality...
Categories: Data;
Tags: Aquatic Biology,
Clinch River, VA, USA,
USGS Science Data Catalog (SDC),
Wildlife Biology,
biota
All samples were collected within a 9km stretch of the Santa Fe River in northern Florida, USA. In 2019 and 2020 we sampled claw tissue from Macrochelys suwanniensis, Chelydra serpentina, and Trachemys scripta scripta, from three different sampling locations. We collected Vegetation and potential prey tissue samples within close proximity of turtle captures from two of the three capture locations. All tissues were used for stable carbon and nitrogen isotope analysis.
Categories: Data;
Tags: Ecology,
Florida,
Lower Suwannee,
USGS Science Data Catalog (SDC),
Wildlife Biology,
This dataset contains the results from 80 visual encounter surveys at two wetlands in Palmetto Island State Park, Vermillion Parish, Louisiana from August 2015 to April 2019. These surveys mainly targeted snakes but small turtles and anoles were also opportunistically captured. Captured animals were swabbed to determine the prevalence of Ophidiomyces ophiodiicola, the causative agent of Snake Fungal Disease. Physical measurements were taken on all captured individuals. This dataset also includes environmental data such as temperature, water level, and humidity at the study site.
Ecological models facilitate evaluation of alternative approaches to restore the Greater Everglades ecosystem. However, the provision of useful and accessible models is a challenge because there is often a disconnect between model output and its use by decision makers. Joint Ecosystem Modeling (JEM) meets this challenge by providing ecological model output tailored to management decisions. Ecological models (i.e., ecological planning tools) were developed and used by JEM during the Central Everglades Planning Project to evaluate potential effects to natural resources in the impacted areas. There is a desire by the planning agencies and bureaus involved in the Western Everglades Restoration Project (WERP) to use...
Burmese pythons are an invasive species in the Greater Everglades Ecosystem. Burmese pythons captured in the ecosystem are euthanized, and in an effort to learn about this invasive species, all euthanized pythons are necropsied, during which time samples are collected. We analyzed the stable isotope ratios of carbon and nitrogen in muscle samples from 423 Burmese pythons euthanized and necropsied between 2003-05-01 and 2012-09-02, and after processing and QA/QC, we were left with isotope ratios for 410 samples, which we reported here. We used these data to estimate the size of the isotopic niche of the Burmese python, commonly measured using standard ellipse areas, or SEAs. To put these SEAs in context, we conducted...
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Ecology,
Everglades,
Florida,
Florida Bay-Florida Keys,
Southern Florida,
This dataset provides demographic information for the Svalbard population of pink-footed geese from 1991 to 2018. Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government.
Old World Climbing Fern (Lygodium microphyllum (Cav.) R. Br.) is an invasive plant species threatening South Florida ecosystems. In 1989 L. microphyllum was observed in the Arthur R. Marshall Loxahatchee National Wildlife Refuge. L. microphyllum has attributes that allow it to thrive in South Florida. It produces a huge number of small spores that are easily suspended by wind and dispersed, have a high germination rate, and gametophytes have a high rate of sporophyte production. Aerial dispersal allows it to spread to suitable germination sites and its ability to self-fertilize at such high rates promotes successful colonization. The intense, abundant spore production also assists in saturating most suitable colonization...
Categories: Data;
Tags: Ecology,
Everglades,
Loxahatchee NWR,
Old World climbing fern,
USGS Science Data Catalog (SDC),
The Barrier Island Comprehensive Monitoring (BICM) program was developed by Louisiana’s Coastal Protection and Restoration Authority (CPRA) and is implemented as a component of the System Wide Assessment and Monitoring (SWAMP) program. The program uses both historical data and contemporary data collections to assess and monitor changes in the aerial and subaqueous extent of islands, habitat types, sediment texture and geotechnical properties, environmental processes, and vegetation composition. Examples of BICM datasets include still and video aerial photography for documenting shoreline changes, shoreline positions, habitat mapping, land change analyses, light detection and ranging (lidar) surveys for topographic...
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Ecology,
Gulf of Mexico,
Louisiana,
Louisiana Coastal,
Modern Delta Region,
These data are the primary data used to model rainbow trout growth in Glen Canyon. Fish growth data were collected from nighttime boat electrofishing field campaigns conducted five to six times per year in April, July, September, and January, from April 2012 through November 2021 for a total of 9798 observations of mark-recapture-based growth. Sampling was conducted in a five km reach in the lower portion of the Glen Canyon tailwater (3.7-8.9 km upstream of Lees Ferry, AZ). Two nights of sampling occurred on each trip, with the central 2-3 km of the reach sampled on both nights. After capture, fish were kept in aerated 40-L buckets and transported to a central processing location. Groups of 10-15 fish were anesthetized...
The 1966-2022 North American Breeding Bird Survey (BBS) dataset contains avian point count data for more than 700 North American bird taxa (species, races, and unidentified species groupings). These data are collected annually during the breeding season, primarily in June, along thousands of randomly established roadside survey routes in the United States and Canada. Routes are roughly 24.5 miles (39.2 km) long with counting locations placed at approximately half-mile (800-m) intervals, for a total of 50 stops. At each stop, a citizen scientist highly skilled in avian identification conducts a 3-minute point count, recording all birds seen within a quarter-mile (400-m) radius and all birds heard. Surveys begin 30...
A study comparing reintroduction scenarios for the San Francisco gartersnake (Thamnophis sirtalis tetrataenia), an endangered subspecies native to San Mateo County and Santa Cruz County in northern California. Models for snake survival, growth, fecundity, and reproductive status were used to construct a demographic population model. Data are posterior distributions for demographic parameters from Markov Chain Monte Carlo sampling in hierarchical Bayesian models. These data support the following publication: Rose, J.P., Kim, R., Schoening, E.J., Lien, P.C., and Halstead, B.J., 2023. Comparing reintroduction strategies for the endangered San Francisco gartersnake (Thamnophis sirtalis tetrataenia) using demographic...
Categories: Data;
Tags: California,
San Mateo County,
USGS Science Data Catalog (SDC),
Wildlife Biology,
biota,
We analyzed the single nucleotide polymorphisms (SNPs) present in the genomes of moose representing 3 subspecies in the contiguous United States. Blood samples were collected opportunistically from collaborators during field efforts or were supplied to our lab from collaborators' archives, and represented moose sampling occurring between 2009-2017. DNA was extracted, sequenced using next generation sequencing, and SNPs analyzed using the genetics programs Structure and Tess3, and by performing basic population statistics. These analyses were used to determine the population structure of moose at the subspecies level.
Data presented are results of surveys in 2022 for Southwestern Willow Flycatcher (Empidonax traillii extimus) in San Diego County, California. Surveys were conducted at the 2016-19 nest monitoring locations (Cleveland National Forest, Rey River Ranch, and Vista Irrigation District) and at Lake Henshaw along the Upper San Luis Rey River. Surveys were conducted along multiple sections of the river where permission to access properties could be obtained. Locations were surveyed using a standardized protocol three to four times between 15 May and 31 July. The number, age (adult or juvenile), sex, banding status (color banded or not, and if so, color combination), and breeding status (paired, undetermined, or transient)...
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Ecology,
San Diego,
San Luis Rey River,
USGS Science Data Catalog (SDC),
Wildlife Biology,
Hawaiian hoary bats ('ōpe'ape'a; Lasiurus semotus) were captured and tracked back to roosting locations on Hawaiʻi Island from 2018-2021. We examined resource selection at multiple spatial scales - perch location within a roost tree, roost tree, and forest stand. We used a discrete choice modeling approach to investigate roost selection and describe attributes of day-roost trees including those used as maternity roosts. ‘Ōpe‘ape‘a were found roosting in a variety of tree species and in an assortment of habitat types including native and non-native habitats. This data release consists of six tabular datasets: (1) Hawaiʻi Island ʻōpeʻapeʻa roost perch metrics, 2019–2021, (2) Hawai‘i Island ʻōpeʻapeʻa roost tree metrics,...
Alala, or Hawaiian Crow (Corvus hawaiiensis), were extinct in the wild since the early 2000s. The first effort to reintroduce captive bred Alala back into the wild was conducted at Puu Makaala Natural Area Reserve on Hawaii Island. The 2017 release cohort were released in two stages and were the only Alala in the wild. Using automated radio telemetry tracking towers (n=4) that were distributed around the release area, we tracked the birds from September 26, 2017, to May 19, 2018, to document early exploratory movement of these birds in the wild.
Categories: Data;
Tags: Hawaii Island,
Puu Makaala Natural Area Reserve,
USGS Science Data Catalog (SDC),
Wildlife Biology,
biota,
This data release consists of a single table that includes sample site geographic locations, insect prey abundance, and bat activity and behavior metrics. The dataset was used to develop multi-state occupancy models of foraging habitat use by Hawaiian hoary bats (Lasiurus cinereus semotus).
Our objectives were to examine the population history of axis deer on Maui, estimate observed population growth, and then use species-specific demographic parameters in a VORTEX population viability analysis to examine removal scenarios that would most effectively reduce the population. Only nine deer were introduced in 1959, but recent estimates of >10,000 deer suggest population growth rates (r) ranging between 0.147 and 0.160 although at least 11,200 have been removed by hunters and resource managers. In the VORTEX simulations, we evaluated an initial population size of 6,000 females and 4,000 males, reflecting the probable 3F:2M sex ratio on Maui because of male biased hunting. Scenarios were modeled over a...
This dataset provides information on the current status and various other habitat and descriptive attributes of the native coastal vegetation for seven of the main Hawaiian Islands (i.e., does not include Ni`ihau).
Categories: Data;
Types: ArcGIS REST Map Service,
ArcGIS Service Definition,
Citation,
Downloadable,
Map Service;
Tags: Ecology,
Hawaii,
Kahoolawe,
Kauai,
Lanai,
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