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Filters: System Type: Data Release (X) > Categories: NOT Data Release - In Progress (X) > Tags: {"type":"USGS Scientific Topic Keyword","name":"aquatic biology"} (X) > Tags: {"type":"USGS Scientific Topic Keyword","name":"ecology"} (X) > Types: Map Service (X)

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These data are a compilation of fishway structures collected by the Atlantic States Marine Fisheries Commission state representatives at the request of the U.S. Geological Survey. The variables included within this dataset range from locality information and structure metadata (eg. latitude/longitude and year of construction) to metrics specifically about the fishway structure (eg. fishway width). The dataset ranges in dates of construction from 1882 to 2020 and includes fishways from all states on the eastern coast of the United States. Requests were sent to the Atlantic States Marine Fisheries Commission state representatives to collect fishway data from the areas within their responsibility. The state representatives...
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Physical and chemical changes affect the biota within urban streams at varying scales ranging from individual organisms to populations and communities creating complex interactions that present challenges for characterizing and monitoring the impact on species utilizing these freshwater habitats. Salmonids, specifically cutthroat trout (Oncorhynchus clarkii) and coho salmon (Oncorhynchus kisutch), extensively utilize small stream habitats influenced by a changing urban landscape. This study used a comprehensive fish health assessment concurrent with the U.S. Geological Survey’s Pacific Northwest Stream Quality Assessment in 2015 to quantifiy impacts from disease in juvenile coho and cutthroat salmon, impacts to...
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Benthic diatom assemblages are known to be indicative of water quality but have yet to be widely adopted in biological assessments in the United States due to several limitations. Our goal was to address some of these limitations by developing regional multi-metric indices (MMIs) that are robust to inter-laboratory taxonomic inconsistency, adjusted for natural covariates, and sensitive to a wide range of anthropogenic stressors. We aggregated bioassessment data from two national-scale federal programs and used a data-driven analysis in which all-possible combinations of 2-7 metrics were compared for three measures of performance. The datasets in this release support the Carlisle, et al. 2022 report cited herein....
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A total of 27 temperature sensors were deployed along the lower 90 miles of the Yakima River at 7 locations where cold water had been previously observed. These 7 cold-water areas had 3 to 6 temperature sensors installed to document the extent and duration of these cold-water areas and their impacts on mainstem temperatures of the Lower Yakima River. Cold-water areas included the mouths of tributaries, alongside channels, and within alcoves. Sensor deployments ranged from 1 to 2 years beginning in October 2018. All temperature data are included in the Yakima.temperatures.zip folder. Details of each monitoring location are provided in the site.locs.csv file. In addition to the raw data and site location information,...
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This dataset includes hourly stream temperature data for 139 temperature logger sites throughout the Lahontan Basin Region of Northern Nevada and Eastern California. Data loggers were part a study beginning in 2017, with data available through 2019 for most locations. The spatial data layer contains site locations, geographic information, data summaries, mean August stream temperatures, and modeled NorWeST stream temperatures. The Wet-Dry delineation file contains daily flow status estimates derived from stream temperature data for each site. The Site Visit file contains the date and time of the site visit along with associated information on site flow conditions, water depths, logger conditions, and stream logger...
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Benthic invertebrate communities are monitored because the composition of those communities can affect and be affected by the water quality of an aquatic system. Benthic communities use and sometimes regulate the cycling of essential elements (for example, carbon). Benthic invertebrate taxa may also indicate acute and chronic stressors in an environment because they accumulate contaminants and can respond – sometimes dramatically - to oligotrophic and eutrophic conditions. Benthic communities affect water quality by grazing pelagic food resources and increasing the rate of nutrient regeneration through feeding and bioturbating sediments. South San Francisco Bay is a system dependent on phytoplankton as the base...
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Ecological assessment data from the USGS National Water-Quality Assessment Program and the USEPA National River and Stream Assessment were reviewed and records were retained from sampling sites co-located with active USGS stream gages. A limited amount of ancillary data, including location, physical watershed features, and basic water chemistry data for each site were also retained.
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Data are included for laboratory studies evaluating the thermal biology of several freshwater mussel species and their host fish including dwarf wedgemussel (Alasmidonta heterodon), brook floater (Alasmidonta varicosa), creeper (Strophitus undulatus), eastern elliptio mussel (Elliptio complanata), tesselated darter (Etheostoma olmstedi), and slimy sculpin (Cottus cognatus). Thermal endpoints include critical thermal maximum, temperature preference, oxygen consumption rates, and clearance rates of organisms acclimated to a range of temperature treatments.
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The U.S. Geological Survey, Voyageurs National Park, South Dakota State University, and Missouri Department of Conservation conducted a cooperative study to measure ratios of strontium to calcium (Sr:Ca) in cross sections of pectoral fin rays obtained from lake sturgeon (Acipenser fulvescens) captured in lakes and rivers of Namakan Reservoir in Minnesota and Ontario. We measured Sr:Ca ratios in cross sections of 37 pectoral fin rays collected from 10 locations (5 rivers and 5 lakes) in Namakan Reservoir as part of a larger study to investigate whether relations between Sr:Ca in water and pectoral fin rays were significant and useful for determining migratory histories of lake sturgeon in Namakan Reservoir. Pectoral...
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The U.S. Inland Creel and Angler Survey Catalog (CreelCat) contains data compiled from 14,729 creel and angler surveys conducted by state natural resource management agencies (including Washington DC and Puerto Rico) in inland waters across the United States. Data are contained in eight .csv files which contain information about survey characteristics (Survey_Data.csv), angler effort (AngEffort_Data.csv), catch and harvest (FishDataCompiled.csv), angler demographics (Demographic_Data.csv), angler preferences (AngPrefDataCompiled.csv), taxonomic classifications (Taxa_Data.csv), issues with catch and harvest (Fish_Attribution_Issues.csv), and issues with angler preference (AngPref_Attribution_Issues.csv), as well...
Introduction and translocation programs require thoughtful planning to increase the likelihood of success and to understand the benefits, risks, and constraints of such programs. A risk assessment was completed for bull trout introduction into the Sullivan Lake and Harvey Creek watershed, northeastern Washington. The risk assessment was designed to evaluate potential risks to resident fish species, to bull trout introduced into Sullivan Lake, and to bull trout donor source populations. The risk assessment describes the potential risks associated with pathogens, genetics, and ecological interactions. Literature reviews were completed for fish species composition and abundance in Sullivan Lake watershed to assess...
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Note: this dataset has been superseded by this new data product: Simpson, A., Turner, R., Blake, R., Liebhold, A., and Dorado, M., 2021, United States Register of Introduced and Invasive Species: U.S. Geological Survey data release, https://doi.org/10.5066/P95XL09Q. Invasive species are a subset of non-native (or nonindigenous) species, and knowing what species are non-native to a region is a first step to managing invasive species. This is the second update to the dataset "First comprehensive list of non-native species established in three major regions of the United States" supporting a USGS Open File Report by the same name published on 2018-10-17. Version 3.0 of the non-native species list, as of 2020-09-15,...
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The U.S. Geological Survey provides a wide range of scientific information to an even wider group of stakeholders. Understanding what capacities are needed and if and or where these capacities exist across the USGS landscape is critical in moving science to the next level of use, implementation, and visualization. The concept behind the groups organized to conduct and interpret the survey that collected these data took advantage of the USGS’s position as a science organization with expertise spanning a wide range of science disciplines, stakeholders, and responsibilities. A survey was conducted of USGS employees (Sep 20-Nov 20) to get a current sample of the capacities that exist across the USGS.
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A reach of the North Santiam River, Oregon, was used as a case study in an ongoing effort to develop and test uncrewed aircraft system (UAS)-based salmon habitat mapping techniques using: (1) particle image velocimetry (PIV) for estimating surface flow velocities from remotely sensed data; and (2) two-dimensional (2D) flow modeling based on remotely sensed topography and bathymetry (topo-bathymetry). Direct measurements of flow velocity were obtained using an acoustic Doppler current profiler (ADCP) and used to assess the accuracy of the image-derived velocity estimates and modeled flow fields. Water depth was measured using a single beam echosounder and was used to calibrate and validate image-derived depth estimates...
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This data set, compiled by the USGS Lake Erie Biological Station, provides near-bottom measurements of temperature and dissolved oxygen for the Central Basin of Lake Erie. Data were recorded by self-contained environmental data loggers (PME, Inc., MiniDOT data loggers). The data loggers were deployed to collect data during August 2021 through November 2022 to better understand how hypoxia develops and influences fish habitat quality during lake stratification. The data loggers were deployed on acoustic telemetry receivers in a network designed to record tagged fish movements (Great Lakes Acoustic Telemetry Observation System, GLATOS). Additional years of data collection are planned, and data release will be updated...
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This data set, compiled by USGS Lake Erie Biological Station, provides near-bottom measurements of temperature and dissolved oxygen for the Central Basin of Lake Erie. Data were recorded by self-contained environmental data loggers (PME, Inc., MiniDOT data loggers). The data loggers were deployed during the stratified period (i.e., beginning of June 2020 through late October 2020) to better understand how hypoxia develops and influences fish habitat quality. The data loggers were deployed on acoustic telemetry receivers in a network designed to record tagged fish movements (Great Lakes Acoustic Telemetry Observation System, GLATOS). Additional years of data collection are planned, and data release will be updated...
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This layer represents fundamentally suitable and unsuitable habitat for freshwater mussels in the Meramec Basin as modeled by these authors on May 17, 2017 based on spatial data ranging from 1990 to 2014. Identification of habitat characteristics associated with the presence of freshwater mussels is challenging but crucial for the conservation of this declining fauna. Most mussel species are found in multi-species assemblages suggesting that physical factors influence presence similarly across species. In lotic environments, geomorphic and hydraulic characteristics appear to be important factors for predicting mussel presence. We used maximum entropy (MaxEnt) modeling to evaluate hydrogeomorphic variables associated...
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(THIS VERSION HAS BEEN SUPERSEDED by US-RIIS V2.0, November 2022, available at https://doi.org/10.5066/P9KFFTOD) Introduced (non-native) species that becomes established may eventually become invasive, so tracking introduced species provides a baseline for effective modeling of species trends and interactions, geospatially and temporally. The United States Register of Introduced and Invasive Species (US-RIIS) is comprised of three lists, one each for Alaska (AK, with 532 records), Hawaii (HI, with 6,075 records), and the conterminous United States (L48, with 8,657 records). Each list includes introduced (non-native), established (reproducing) taxa that: are, or may become, invasive (harmful) in the locality; are...
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These data represent 1) Telemetry from Florida manatee from Crystal River, FL 2006-2018 2) Observations of manatees, swimmers and paddlecraft from Three Sisters Springs, Crystal River, FL 2014-2017 3) GIS polygons of aquatic landscape features from Crystal River, FL.
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Data are included for two types of field surveys conducted for freshwater mussels within the Neversink River in the Mid-Atlantic region of the United States. Timed search (qualitative) surveys were conducted in consecutive ~200 meter sections of river in 2006 and 2007; a subset of these sections were re-surveyed qualitatively in 2009. The number of mussels of each species and associated search time were recorded for each survey section to determine a catch per unit effort (CPUE; number of individuals found per person hour). Within the 2009 qualitatively surveyed areas, ten ~200 meter sections of stream were selected in which to conduct quantitative surveys to estimate mussel abundance. Quantitative survey methods...
map background search result map search result map Matched ecological assessment and stream gaging data for the CONUS Evaluating Coho Salmon in Streams Across an Urbanization Gradient—Part 1, Growth Potential Based on Environmental Factors and Bioenergetics Benthic Community Dynamics in Coyote Creek and Artesian Slough, Southern San Francisco Bay, California, May 2016 to March 2018 A comprehensive list of non-native species established in three major regions of the United States: Version 3.0 Laboratory studies on the thermal biology of freshwater mussels and their host fish species Ratios of strontium to calcium measured in pectoral fin rays of lake sturgeon (Acipenser fulvescens) captured in the lakes and rivers of Namakan Reservoir, Minnesota, United States and Ontario, Canada, 2007-15 Neversink River freshwater mussel surveys: 2006-2009 Niche model results predicting fundamentally suitable and unsuitable habitat for freshwater mussel concentrations in the Meramec Basin USGS Earthmap Capacity Assessment Dataset Temperature data collected from the Lower Yakima River from October 2018 to October 2020 Bottom dissolved oxygen measurements from Lake Erie's Central Basin, 2020 Stream Temperature in the Lahontan Basin of Nevada and California, 2017-2019 Data Release for: A Web-Based Tool for Assessing the Condition of Benthic Diatom Assemblages in Streams and Rivers of the Conterminous United States Information tables associated with a risk assessment for bull trout introduction into Sullivan Lake, northeastern, Washington including population donor sources and resident species, April 2021 Fishway Structure Data in the Eastern United States GPS Telemetry and other data sets of Florida manatees from Crystal River, FL 2006-2018 United States Register of Introduced and Invasive Species (US-RIIS) Bottom dissolved oxygen measurements from Lake Erie's Central Basin, 2021-2022 Remotely sensed data acquired from an Uncrewed Aerial System (UAS) and field measurements of flow depth and velocity from the North Santiam River, Oregon, collected in July 2022 The U.S. Inland Creel and Angler Survey Catalog (CreelCat): A Database and Interactive Tool for Inland Fisheries Management and Research Laboratory studies on the thermal biology of freshwater mussels and their host fish species Remotely sensed data acquired from an Uncrewed Aerial System (UAS) and field measurements of flow depth and velocity from the North Santiam River, Oregon, collected in July 2022 Benthic Community Dynamics in Coyote Creek and Artesian Slough, Southern San Francisco Bay, California, May 2016 to March 2018 Information tables associated with a risk assessment for bull trout introduction into Sullivan Lake, northeastern, Washington including population donor sources and resident species, April 2021 GPS Telemetry and other data sets of Florida manatees from Crystal River, FL 2006-2018 Neversink River freshwater mussel surveys: 2006-2009 Niche model results predicting fundamentally suitable and unsuitable habitat for freshwater mussel concentrations in the Meramec Basin Bottom dissolved oxygen measurements from Lake Erie's Central Basin, 2020 Bottom dissolved oxygen measurements from Lake Erie's Central Basin, 2021-2022 Evaluating Coho Salmon in Streams Across an Urbanization Gradient—Part 1, Growth Potential Based on Environmental Factors and Bioenergetics Stream Temperature in the Lahontan Basin of Nevada and California, 2017-2019 Fishway Structure Data in the Eastern United States Matched ecological assessment and stream gaging data for the CONUS Data Release for: A Web-Based Tool for Assessing the Condition of Benthic Diatom Assemblages in Streams and Rivers of the Conterminous United States United States Register of Introduced and Invasive Species (US-RIIS) A comprehensive list of non-native species established in three major regions of the United States: Version 3.0 The U.S. Inland Creel and Angler Survey Catalog (CreelCat): A Database and Interactive Tool for Inland Fisheries Management and Research USGS Earthmap Capacity Assessment Dataset