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The Alaska Trumpeter Swan Survey was an aerial survey conducted by the U.S. Fish and Wildlife Service, Division of Migratory Bird Management, Alaska Region (MBM-AK) and partners to monitor the status of trumpeter swans (Cygnus buccinator) in Alaska. It was first conducted in 1968 and then repeated at five-year intervals from 1975 through 2015. The objectives of the survey were to estimate the abundance, distribution (1968–2005 only), and productivity of trumpeter swans in late summer, when the swans were dispersed on breeding territories and cygnets were large enough to be easily counted from the air. Estimates were obtained for the abundance of white swans (swans >1 year old), cygnets, and total swans, as well...
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This is the GeoPackage (“TMG_AdditionalArea_Trans.gpkg”) that contains the layer (“main.TMG_Area_Trans”) depicting the spatial extent of the four Additional Survey Area transects that are surveyed during the annual MBM-AK TLSA molting goose aerial surveys. This GeoPackage (NAD83; ESPG: 3338) was created by Michael Swain in August 2021 and subsequently emailed to Maggie Harings. It includes waterbody units, waterbody types, and waterbody perimeter as well as their areas.Transects do not exist for Cape Simpson as this area is adequately assessed by conducting aerial surveys for lakes only. Piasuk River Delta area is surveyed using a combination of aerial lake surveys and transects. Colville River Delta and Atigaru...
Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: ALPINE/TUNDRA, ANIMALS/VERTEBRATES, ARCTIC TUNDRA, BIOLOGICAL CLASSIFICATION, BIOLOGICAL RECORDS, All tags...
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This collection contains the original “raw” survey data that were recorded and transcribed by each observer during the Yukon-Kuskokwim Delta (YKD) Aerial Breeding Pair Survey. Left-front and right-front seat observers recorded data on geese, swans, and cranes since 1985, while data on eiders, ducks, and waterbirds was recorded by a right-rear seat observer since 1989. These raw transcribed data should be used to produce updated quality-control (QC) datasets by running the quality assurance/quality control script “AKaerial.R” whenever the quality control procedures are revised or modified. The data files in this collection were named using the following naming convention: YKD(YKG)YYYY_RawObs_OOOO, where YKD=Duck...
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This R code (Nest_Cards_QC.R) is used to process the raw legacy nest card data (1985 - 2019) and produce the quality controlled legacy nest card data for analysis and sharing. This code does not quality control the double searched plots (R2 plots in 1995-99), which is done in the file ‘PrepData.R’. Basic operations include transforming missing value to a common code, transforming other variable to match the data dictionary for nest cards, and resolving non-unique observer initials. The code requires the raw data (“1985-2019_Nest Cards_10-24-19_cleaned.xlsx”) and the table of observer names (“Observer Names_1985-2019_10-24-19.xlsx”). The code writes the QC nest card file “Nest_Cards_1985_2019_QC.csv”. Mostly obseration...
Categories: Data, Software; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, All tags...
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Between September and November each year, nearly the entire world population of Pacific black brant (Branta bernicla nigricans) stages at Izembek Lagoon and surrounding estuaries (hereafter: Izembek Complex). The Izembek Complex is a unique area of protected brackish waters, supporting one of the world’s largest eelgrass beds and a diverse array of wildlife. The Alaska Fall Brant Survey has been conducted annually since 1976 in late-September through October, to provide an index of abundance for the entire post-breeding Pacific black brant population (Branta bernicla nigricans), while secondarily, providing annual fall population indices for cackling geese (Branta hutchinsii), emperor geese (Anser canagicus), and...
The Waterfowl Breeding Population & Habitat Survey (WBPHS) has been conducted annually since 1955 (1957 in Alaska) by the U.S. Fish and Wildlife Service (FWS) and Canadian Wildlife Service to estimate the spring abundance of targeted waterfowl species in their principal breeding areas of North America. The survey results are used to establish annual hunting regulations in the United States and Canada, monitor population trends, and inform various conservation and management decisions at the state, flyway, and continental levels.The Waterfowl Program in the FWS Division of Migratory Bird Management-Alaska Region (MBM-Alaska) is responsible for surveying strata 1–12 of the WBPHS during May to June of each year (i.e.,...
Categories: Data, Project; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, All tags...
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This is an incomplete collection of track files produced during the MBM-AK TLSA molting goose survey flights. They reference latitude, longitude, and time in total seconds in the day. These files are called by R code (‘TMGSurvey_Master_2019.Rmd’ located in ‘GitHub_Annual_Report_Code’). Following review of this code, it appears as though these transcripts were not ultimately used in any way. Please consult ‘TMGSurvey_Master_2019.Rmd’ for additional context. Track file naming format is as follows: ‘TR[date][firstInitialLastNameOfObserver].csv’; HWilson refers to Heather Wilson while BShults refers to Brad Shults.
Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: ALPINE/TUNDRA, ANIMALS/VERTEBRATES, ARCTIC TUNDRA, BIOLOGICAL CLASSIFICATION, BIOLOGICAL RECORDS, All tags...
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The Yukon-Kuskokwim Delta (YKD) Aerial Breeding Pair Survey provides data on the spring abundance of targeted waterfowl species nesting on the YKD coastal zone in western Alaska. This region supports millions of waterbirds that comprise one of the largest and most important waterfowl breeding grounds in North America, including species of concern such as the red-throated loon (Gavia stellata), emperor goose (Chen canagica), Pacific black brant (Branta bernicla nigricans), common eider (Somateria mollissima), black scoter (Melanitta nigra), long-tailed duck (Clangula hyemalis), and the threatened spectacled eider (Somateria fischeri). The YKD goose, swan, and crane survey was first implemented in 1985 to monitor...
Categories: Data, Project; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, All tags...
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This is the collection of raw data was collected during MBM-AK TLSA annual molting goose surveys. Partial quality control has been completed for these data: following each survey, the observer listened to their survey recording that documented counts along transects and then transcribed these findings into these raw datasets (‘raw_data’). The observer listened to their recording a second time in order to confirm that their transcriptions were correct. Further quality control and tidying was completed for these raw data using R scripts noted by the file extension ‘.Rmd’ located in the ‘GitHub_Annual_Report_Code’ folder. Ultimately, these scripts produced final datasets (‘final_data’) containing data used in annual...
Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: ALPINE/TUNDRA, ANIMALS/VERTEBRATES, ARCTIC TUNDRA, BIOLOGICAL CLASSIFICATION, BIOLOGICAL RECORDS, All tags...
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More than 90% of the Pacific population of Steller’s eider (Polysticta stelleri) spends a portion of the fall in Alaska during fall wing molt and staging period, mostly along the Alaska Peninsula. The long-term Steller’s eiders counts from fall emperor goose surveys have shown declines at Izembek Lagoon and Port Heiden and approximate stability at Seal Islands and Nelson Lagoon (1992-2015, USFWS unpubl. data). Spring surveys for Steller’s eiders have been conducted along the north side of the Alaska Peninsula by USFWS since 1992; fall oblique photographic surveys covering the same area began in 2012.Systematic transect-based “overhead” photography is a method proposed for the fall survey and will be used to generate...
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Decide whether or not to fly the survey. This is a somewhat subjective call, but current and forecasted weather, especially ceiling height and cloud density, visibility, wind and rain are the main components that go into making that decision. Wind >15kts, ceiling <2,000ft, steady rain or visibility <5 mi generally results in a “no go” for flying the survey at that time. If any of these conditions are forecasted in the following 4-6 hrs, also generally calls for waiting for better conditions or forecasts.If a survey is a “go”, the survey aircraft departs Nelson Lagoon airstrip and flies east toward transect number 1. All photographic gear, cameras, computers, screens have been previously set up and software tested....
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This collection contains the quality-control (QC) transcribed data from the Yukon-Kuskokwim Delta Aerial Breeding Pair Survey. These QC data were produced from the “raw” data using the R Package “AKaerial.” The raw data were evaluated against the current data standards in the ‘AKaerial data dictionary’ and saved to new QC data files with associated log files that document any changes that were made. From 1985 to 1997, observers recorded bird observations out to 200 meters from the aircraft using continuously running tape players (with a locational accuracy of +/- 5 km), while an automated voice recording survey program (with a spatial accuracy of +/- 0.5 km) was used to record data from 1998 to present. The data...
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R code that takes in the nest capture history data (chdata.csv), reformats it for model fitting in Program Mark via the R package RMark. A series of models of increasing complexity are fit and compared using AIC. Output is written to text files for each model but is generally not used or saved. Code can be run to generate model results and R workspaces/ object to inspect parameter estimates. The primary purpose of this code is to explore model structures for predicting detection and as an attempt to reproduce historically used parameter estimates in past nest plot reports (e.g., Fischer et al. 2017 and earlier). Results from ‘Model 7’ are most similar to detection estimates used in the past.
Categories: Data, Software; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, BIOLOGICAL CLASSIFICATION, BIOLOGICAL CLASSIFICATION, All tags...
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These are the observer names, observer initials, year, and unique observer number for all observe that collected data on the YKD nest plot project from 1985 to 2019. This data is used with the nest card data to in various ways, but primarily to calculate cumulative observer experience for nest detection rates. This file is also used for quality control and reconciling non-unique observer initials across years.
Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, All tags...
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This is the YKD egg observation data reformatted from the nest card data (‘Nest_Cards_1985_2019_QC.csv’). The file eggs.R is used to produce this data set, and then this is further summarized into yearly stats on mean initiation and hatch dates to produce the file yearstats.csv.
Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, All tags...
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From 1995 to 1999, a subset of nest plots were searched twice by field crews to estimate nest detection probability by mark-recapture methods. Over the five years, 30 plots were searched twice and over 2700 unique nests were found. From these data, nest detection probability is estimated using a Huggins-type mark recapture model where individual-level covariate effects of nest and observer attributes were estimated. These estimates are then used to predict nest detection rates in other years based on covariates of nests and observers. Nest detection rates are then applied to annual plot search to estimate nest populations for each species in the sampled area.
Categories: Data, Project; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, All tags...
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This collection contains the report log files produced by the R Package “AKaerial” when the QC data were created from the raw transcribed data. The QC log files document the quality control process, data standards, and what changes (if any) were made to the QC data compared to the raw data. Each log file was named following the same file naming conventions: SSSYYYY_QCLog_OOOO, where; YKD=Duck data, YKG=Goose data, YYY=Year, and OOO=observer’s first initial and last name.
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R code that takes in the nest capture history data (chdata.csv), reformats it for model fitting in the Bayesian MCMC software JAGS via the R package jagsUI. Various generalized linear mixed models are fit using a Huggins two occasion capture history model structure as in Program Mark. A series of models of increasing complexity are fit and compared using DIC. Model text is written to text files for each model but is generally not used or saved. Posteriors are saved as Rworkspaces or written to text files for use in population estimation (nostpop.R). Code can be run to generate model results and R workspaces/objects to inspect parameter estimates. The primary purpose of this code is to compare various mixed model...
Categories: Data, Software; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, BIOLOGICAL CLASSIFICATION, BIOLOGICAL CLASSIFICATION, All tags...


map background search result map search result map Alaska Izembek Fall Brant Aerial Survey 1976-Present Fall Steller's Eider Overhead Survey at Nelson Lagoon, Alaska, 2020 Camera Operator Protocol for Steller's Eider Overhead Survey in Nelson Lagoon, Alaska Alaska Trumpeter Swan Survey 1986-2015 Waterfowl Breeding Population and Habitat Survey Alaska-Yukon Teshekpuk Lake Alaska Molting Goose Survey Track Files Teshekpuk Lake Alaska Molting Goose Additional Survey Area Transects GeoPackage Teshekpuk Lake Alaska Molting Goose Raw Aerial Survey Data Alaska Yukon Delta Detection Model Fitting Code Using R and RMark Alaska Yukon Delta Double Observer Nest Plot Detection Alaska Yukon Delta Nest Plot Survey Detection Model Fitting Code Using R and JAGS Alaska Yukon Delta Nest Plot Distance Sampling Field Protocol Alaska Yukon Delta Nest Plot Survey Legacy Nest Card Quality Control R Code Alaska Yukon Delta Nest Plot Survey Legacy Nest Card Data 1985 - 2019 Alaska Yukon Delta Nest Plot Survey Observer Names 1985 - 2019 Alaska Yukon Delta Tidy Egg Data 1985 - 2019 Alaska Yukon-Kuskokwim Delta Aerial Breeding Pair Survey Alaska Yukon-Kuskokwim Delta Aerial Survey Raw Transcribed Data Alaska Yukon-Kuskokwim Delta Aerial Survey Analysis File Summary Reports Alaska Yukon-Kuskokwim Delta Aerial Survey QC Transcribed Data Fall Steller's Eider Overhead Survey at Nelson Lagoon, Alaska, 2020 Camera Operator Protocol for Steller's Eider Overhead Survey in Nelson Lagoon, Alaska Alaska Izembek Fall Brant Aerial Survey 1976-Present Teshekpuk Lake Alaska Molting Goose Survey Track Files Teshekpuk Lake Alaska Molting Goose Additional Survey Area Transects GeoPackage Teshekpuk Lake Alaska Molting Goose Raw Aerial Survey Data Alaska Yukon Delta Detection Model Fitting Code Using R and RMark Alaska Yukon Delta Double Observer Nest Plot Detection Alaska Yukon Delta Nest Plot Survey Detection Model Fitting Code Using R and JAGS Alaska Yukon Delta Nest Plot Distance Sampling Field Protocol Alaska Yukon Delta Nest Plot Survey Legacy Nest Card Quality Control R Code Alaska Yukon Delta Nest Plot Survey Legacy Nest Card Data 1985 - 2019 Alaska Yukon Delta Nest Plot Survey Observer Names 1985 - 2019 Alaska Yukon Delta Tidy Egg Data 1985 - 2019 Alaska Yukon-Kuskokwim Delta Aerial Breeding Pair Survey Alaska Yukon-Kuskokwim Delta Aerial Survey Raw Transcribed Data Alaska Yukon-Kuskokwim Delta Aerial Survey Analysis File Summary Reports Alaska Yukon-Kuskokwim Delta Aerial Survey QC Transcribed Data Waterfowl Breeding Population and Habitat Survey Alaska-Yukon Alaska Trumpeter Swan Survey 1986-2015