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Extant population monitoring and habitat assessment data sets of benthic species were used as inputs for occupancy models focused on Sicklefin and Sturgeon chub with the goals of describing temporal, spatial, and environmental factors associated with occupancy patterns of each chub species, assessing co-occurrence of the two species, and determining relationships between co-occurrence and environmental factors. We also used three-species occupancy models to assess co-occurrence of these chubs with other primarily benthic species. This data set is comprised of the outputs of these models.
Categories: Data;
Tags: Aquatic Biology,
Missouri River,
USGS Science Data Catalog (SDC),
aquatic biology,
benthic ecosystems,
This dataset presents the results of passive water sampling conducted at 2 sites in 2013 and 3 sites in 2014 in Lake Mead National Recreational Area. Polar Organic Chemical Integrative Samplers (POCIS) and Semipermeable Membrane Devices (SPMDs) were deployed in Las Vegas Bay and Overton Arm in 2013 and Las Vegas Bay, Boulder Basin, and Overton Arm in 2014. The samplers were analyzed for concentrations of polychlorinated biphenyls (PCBs), organochlorines (DDT-type compounds and their degradates), polybrominated biphenyl ethers (PBDEs), polycyclic aromatic hydrocarbons (PAHs), waste indicators (WW), and yeast estrogen screen (YES) by the U.S. Geological Survey (USGS) at the Columbia Environmental Research Center (CERC)...
Categories: Data;
Tags: Boulder Basin,
Colorado River,
Lake Mead,
Lake Mead National Recreational Area,
Las Vegas,
We provide a comprehensive review of the status of non-native fishes in the central Indian River Lagoon (from Cape Canaveral to Grant-Valkaria, east of I-95) through literature review and field surveys. Historical records exist for 17 taxa (15 species, one hybrid, one species complex). We found historical records for one additional species and collected one species in our field survey that had never been recorded in the region before (and which we eradicated). Thus, we evaluate 19 total taxa herein. Of these, we document range expansion of four salt-tolerant cichlid species, extirpation of six species that were previously recorded from the area and eradication of three species. There was no noticeable change in...
Categories: Data;
Types: Citation;
Tags: Aquatic Biology,
Ecology,
Fishes,
Florida,
Indian River Lagoon,
The dataset is a composite of morphological data used in the description of a new species of marine fish, Trachinotus macrospilus (Teleostei: Carangidae), endemic to the Marquesas Islands of the Indo-West Pacific. In the addition to the newly described species, three previously named (nominate) species of the same genus are compared and redescribed in this same manuscript. The morphological data include both mensural (morphometric) and meristic (count) data. Synonymies are provided for all species, since many misidentifications have been made in the literature, which dates to the early 1800's.
Categories: Data;
Tags: Aquatic Biology,
Carangidae,
Marquesas Island,
Trachinotus macrospilus n. sp.,
USGS Science Data Catalog (SDC),
Ecological models facilitate evaluation and assessment of alternative approaches to restore the Greater Everglades ecosystem. The models of particular interest to the South Florida Water Management District for planning for the Everglades Agricultural Area (EAA) Reservoir were: (1) Cape Sable Seaside Sparrow Marl Prairie Indicator, (2) Florida apple snail (native) population model (EverSnail), (3) Wader Distribution Evaluation Modeling (WADEM), (4) Small-sized freshwater fish density, and (5) American alligator production probability (i.e., habitat suitability index (HSI)). We ran these models using hydrologic conditions (provided by the South Florida Water Management District, see Process Steps section below) for...
This data release indicates faunal presence or absence of shelly artifacts (invertebrate remains) from the Dominican University of California archaeological site MRN-CA-254, Marin County, California.
Categories: Data;
Tags: Aquatic Biology,
CMHRP,
Climatology,
Coastal and Marine Hazards and Resources Program,
Cultural Use,
This data release provides census counts of benthic foraminifera (in percent for the total fauna and as raw counts for just the living specimens) as well as environmental parameters (temperature, salinity, and oxygen concentration) at the sampling sites, and radiocarbon measurements from selected push core samples obtained under and near a whale-fall off western Vancouver Island, British Columbia, Canada.
Categories: Data;
Tags: Aquatic Biology,
British Columbia,
CMHRP,
Canada,
Coastal and Marine Hazards and Resources Program,
These two datasets contain the required input files to run the "Fluvial Particle" model developed for Searcys Bend. The dataset named "Searcys_LPT_InputFiles" contains the main Python input files needed to run the model while the dataset named "Particle_Start_Locations_n12500" contains the particle starting locations for simulations referenced in the Python input files.
The dataset was generated to verify the suitability of the new TFM bar formulation for wide-scale use in the Sea Lamprey Control Program (SLCP). Dataset includes TFM concentrations of three streams (each used twice) where randomized experimental applications of new and old TFM bar formulation dissolution trials were conducted, TFM concentrations of 12 laboratory flume experimental applications of new and old TFM bar formulation dissolution trials, various collected water chemistry parameters, % Active ingredient data from both new and old TFM bar formulation under normal storage and elevated temperature storage conditions, and bar hardness data from both new and old TFM bar formulation under normal storage and elevated...
Assessment of egg deposition is widely used to provide an index of spawning efforts for lithophilic-spawning fishes. However, little is known about the collection techniques efficacy and bias when collecting fish eggs. We conducted a literature review to assess egg collection methods and evaluate egg retention and capture on egg mats. The literature review provided a summary of different gear types used to collect fish eggs, possible bias from the gears, and egg 'abundance' reporting strategies.
This dataset consists of two tables with the results from two manipulative thermal experiments with juvenile coho salmon (May 2021) and juvenile Chinook salmon (May 2020) and include 1) gene transcription results and heat shock protein 70 abundance in coho salmon and Chinook salmon and 2) water temperatures to which fish were exposed during the experiment.
Data describe a designed environmental DNA (eDNA) experiment for the estimation of eDNA degradation rates for the mucket (Actinonaias ligamentina) from water samples collected in the laboratory. Samples were collected from experiments performed from November 01, 2019 to November 15, 2019 at the USGS Columbia Environmental Research Center, Missouri
Categories: Data;
Tags: Aquatic Biology,
Columbia Environmental Research Center,
USGS Science Data Catalog (SDC),
biota,
eDNA degradation,
These data were compiled to fit Bayesian state-space growth in length models to estimate the environmental variables that influence flannelmouth sucker growth rates in the Grand Canyon. Objective(s) of our study were to quantify monthly intervals of growth of flannelmouth suckers in four river reaches, and test if novel high frequency gross primary productivity data would be a significant predictor of fish growth. These data represent capture histories for flannelmouth sucker (Catostomus latippinis) in the mainstem of the Colorado River within the Grand Canyon (river mile 0 to 226) from 2012-2018 and environmental variable data including water temperature, turbidity, and gross primary productivity. Fish data refer...
Categories: Data;
Tags: American Southwest,
Aquatic Biology,
Arizona,
Bright Angel Creek,
Catostomus latippinis,
This U.S. Geological Survey (USGS) data release is an assessment of aquatic habitat within the tributaries of the lower Middle Fork Salmon River. These datasets are primarily focused on physical stream habitat (2020-21 stream temperature data) and the presence or absence (2021 eDNA data) of fish that inhabit the basin. Many environmental stressors contribute to the declining range and density of Bull trout (S. confluentus) populations, one of which is the toxic trace metals contributions from legacy mine waste and adits. These data were collected in stream habitats with variable physical and thermal conditions. Characterizing and comparing reference streams of similar physical attributes will assist to differentiate...
Categories: Data;
Tags: "Environmental Health",
"Genetics",
"Geochemistry",
"Hydrology",
"Water Quality"],
Amphibians are among the most sensitive taxa to climate change, and species inhabiting arid and semiarid landscapes at the extremes of their range are especially vulnerable to periods of drought. The Jack Creek, Oregon, USA population of Oregon spotted frogs (Rana pretiosa) faces unique challenges occupying the highest elevation site in the species’ extant range and one that has been hydrologically transformed by loss of American beaver (Castor canadensis). We evaluated the effect of drought mitigation (addition of excavated ponds) on relationships between local water availability, legacy beaver dams, and R. pretiosa population dynamics in the Jack Creek system. We conducted capture-mark-recapture sampling at a...
These data were compiled for a manuscript entitled 'Vital rates of a burgeoning population of Humpback Chub in western Grand Canyon. Objective(s) of our study were to compare survival and growth of humpback chub in western Grand Canyon to that from the more established metapopulation in eastern Grand Canyon that spawns in the Little Colorado River (LCR). These data represent capture histories of fish based on mark-recapture data. These data were collected in eastern Grand Canyon (CR-east study site) and in the western Grand Canyon (CR-west study site). The CR-east reach sites are located at the lower 13.56 rkm of the LCR and in the mainstem of the Colorado River at river kilometers (rkm) 126.2-128.7 (2009-2016)...
This data release presents calculated accumulated wastewater (ACCWW, as a percent of total streamflow) values for 43 National Hydrologic Dataset Version 2.1 (NHDPlus V2.1) stream segments coinciding with long-term smallmouth bass sampling locations (Table 1) in the Shenandoah River Watershed (encompassing parts of Virginia and West Virginia, USA). Values are calculated for quarter-year (Quarter 1 [Q1], January - March; Quarter 2 [Q2], April - June; Quarter 3 [Q3], July-September; Quarter 4 [Q4], October-December) time scales (Table 2) and annual time scales (Table 3) for years 2000 to 2018. Estimates at a stream segment represent the combined total upstream wastewater discharges as well as direct discharges into...
Categories: Data;
Tags: Aquatic Biology,
Chesapeake Bay Watershed,
Ecology,
Shenandoah River Watershed,
USGS Science Data Catalog (SDC),
This data set was generated to evaluate the status and response of oysters within Chicopit Bay, FL, in the Timucuan Ecological and Historic Preserve during and following dredging completed by the Army Corps of Engineers for the Mile Point Project. It includes live oyster area estimates from aerial images collected in 2016-2018.
Categories: Data;
Tags: Aquatic Biology,
Ecology,
Timucuan Ecological And Historic Preserve,
USGS Science Data Catalog (SDC),
biota,
This is the mortality and water quality data for 2 efficacy trials of medicated feed for controlling mortality in Walleye (Sander vitreus) due to motile aeromonad infections. Top-coated feed with florfenicol or oxytetracycline or control feed were administered in both trials to fingerling walleye. Daily mortality counts and water quality measurements for dissolved oxygen, pH, temperature are included as csv files.
Categories: Data;
Tags: Aquatic Biology,
MAS,
USGS Science Data Catalog (SDC),
biota,
coolwater finfish,
Hydroacoustic estimates of fish density are used for fisheries management in central Lake Erie. Hydroacoustic data were collected along 10, randomly-selected, 5-kilometer transects and two cross-basin transects between the US and Canadian shorelines in central Lake Erie during July 2021. Software-generated raw variables were used for calculating estimates of hydroacoustic fish densities presented here in tabular form. These data are related to a longer-term data set from 2010-2019, and a data set from 2020.
Categories: Data;
Tags: Aquatic Biology,
Ecology,
Great Lakes,
Lake Erie,
USGS Science Data Catalog (SDC),
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