Filters: Tags: Environmental health (X)
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Acetylene fermentation assays, nitrogen fixation assays, and growth studies were performed with Pelobacter sp. strain SFB93 and Pelobacter acetylenicus DSM3246. Data includes concentrations of acetylene and ethylene over time, and growth measured with OD680 and cell counts.
The accretion history of fringing salt marshes located on the south shore of Cape Cod is reconstructed from sediment cores collected in low and high marsh vegetation zones. These marshes are micro-tidal, with a mean tidal range of 0.442 m. Their location within protected embayments and the absence of large rivers results in minimal sediment supply and a dominance of organic matter contributions to sediment peat. Age models based on 210-lead and 137-cesium are constructed to evaluate how vertical accretion and carbon burial rates have changed over the past century. The continuous rate of supply age model was used to age date 11 cores (10 low marsh and 1 high marsh) across four salt marshes. Both vertical accretion...
Categories: Data;
Tags: 137-cesium,
210-lead,
Barnstable County,
Cape Cod,
Commonwealth of Massachusetts,
Physical and chemical changes affect the biota within urban streams at varying scales ranging from individual organisms to populations and communities creating complex interactions that present challenges for characterizing and monitoring the impact on species utilizing these freshwater habitats. Salmonids, specifically cutthroat trout (Oncorhynchus clarkii) and coho salmon (Oncorhynchus kisutch), extensively utilize small stream habitats influenced by a changing urban landscape. This study used a comprehensive fish health assessment concurrent with the U.S. Geological Survey’s Pacific Northwest Stream Quality Assessment in 2015 to quantifiy impacts from disease in juvenile coho and cutthroat salmon, impacts to...
Categories: Data;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Aquatic Biology,
Bioenergtics,
Church Creek,
Coulter Creek,
East Fork Dairy Cree,
Water, bed sediment, and biota were sampled in selected streams from Butte to near Missoula, Montana, as part of a monitoring program in the upper Clark Fork Basin of western Montana. The sampling program was led by the U.S. Geological Survey (USGS), in cooperation with the U.S. Environmental Protection Agency.
Categories: Data;
Tags: Aquatic Biology,
Clark Fork Basin,
Environmental Health,
Geochemistry,
Hydrology,
This data release contains steady-state hydraulic input files for the FluOil model (Zhu and others, 2022) that describe the lower St. Croix River between St. Croix Falls, Wisconsin, and Stillwater, Minnesota. These files are derived from the results of a steady-state one dimensional (1D) hydraulic model of the river reach at three discharges (10,000, 20,000, and 35,000 cubic feet per second (cfs)) and include the flow depth, velocity magnitude, and shear velocity along the model domain. A constant temperature of 20 degrees Celsius is also specified. The hydraulic model used to generate this dataset was originally adapted from an existing U.S. Army Corps of Engineers Hydrologic Engineering Center River Analysis System...
The United States Geological Survey (USGS) collected a total of 63 samples of surficial sediment from abandoned mine wastepiles, ephemeral channels, nearby outcrops, and background areas representative of the undisturbed lithology within the Free Coinage and Third Term mining districts in the Stansbury Mountains (Krahulec, 2018). The samples were sieved to obtain the less than 177 micron fraction. Geochemical analyses were completed through a third-party contract by AGAT Laboratories. Samples were analyzed for 49 major, minor, and trace elements using Inductively Coupled Plasma-Optical Emission Spectrometry (ICP-OES) and Inductively Coupled Plasma Mass Spectrometry (ICP-MS) methods (Ag, Al, As, Ba, Be, Bi, Ca, Cd,...
Categories: Data;
Tags: Deseret Peak,
Energy Resources,
Environmental Health,
Geochemistry,
Geomorphology,
In a study conducted by the U.S. Geological Survey (USGS) and the New Hampshire Department of Environmental Services, detectable concentrations of per- and polyfluoroalkyl substances (PFAS) were found in the soil at every site despite targeting locations with no known PFAS sources (Santangelo and others, 2022). The widespread distribution of PFAS concentrations in New Hampshire has since sparked critical interest into understanding whether recharge to groundwater contains significant concentrations of PFAS after infiltration through soils. To address this concern, the USGS implemented a pilot study designed to evaluate whether PFAS infiltrate through shallow soil into shallow groundwater. Five sites were selected...
Categories: Data;
Tags: Eastern United States,
Environmental Health,
Hydrology,
New Hampshire,
Northeast,
A method was described for determination of trace levels of silicon by inductively coupled plasma mass spectrometry (ICP-MS) from hydrofluoric (HF) digests of biological samples. The volatility of silicon in HF digests was examined with synthetic solutions as well as soil and mine waste samples. A digestion scheme was optimized to achieve complete dissolution, avoid loss of volatile silicon species and produce sample solutions that can be directly analyzed by ICP-MS. The performance of the method performance was validated by analysis of a number plant and tissue certified reference materials for silicon by ICP-MS. The method was then applied to the determination of silicon from lung biopsy tissues obtained from...
Pollen was measured in ambient air by several methods and in wet atmospheric deposition samples at three monitoring sites in the National Atmospheric Deposition Program (NADP) National Trends Network. A method for counting pollen on filters was developed and provided pollen counts for NADP atmospheric wet-deposition samples and high-volume ambient air samplers (HVAS) for comparison with co-located traditional microscopy and PollenSense sensor counting methods during the 2021 pollen season. Air and precipitation samples were collected by the NADP and analyzed by the Wisconsin State Laboratory of Hygiene, in Madison, Wisconsin and Aerobiology Research Laboratories (Canada). Daily data were obtained from online summaries...
This data release includes hydroacoustic data for the 2021 to 2022 water years at four stations. These stations are part of a discrete and continuous monitoring project in embayments on Long Island Sound to support nutrient management activities in Connecticut. The data were collected by the U.S Geological Survey (USGS) in cooperation with the Connecticut Department of Energy and Environmental Protection. The data were collected using acoustic doppler current profilers (ADCPs) sampling 134 parameters every six minutes. Recorded values above the water surface were removed from files using an R script. The ADCPs were deployed at upstream and downstream locations in the Mystic and Norwalk embayments. For the Mystic...
This imagery dataset consists of 3-meter resolution, lidar-derived imagery of the Front Royal 30 x 60 minute quadrangle in West Virginia and Virginia. The source data used to construct this imagery consists of 1-meter lidar-derived digital elevation models (DEMs) and lidar point cloud (LPC). The lidar source data were compiled from different acquisitions published between 2014 and 2021. The data were processed using geographic information systems (GIS) software. The data is projected in WGS 1984 Web Mercator. This representation illustrates the terrain as a hillshade with contrast adjusted to highlight local relief according to a topographic position index (TPI) calculation.
Categories: Data;
Types: Downloadable,
GeoTIFF,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service,
Raster;
Tags: Economic Geology,
Environmental Health,
Geography,
Geomorphology,
Land Use Change,
Reproductive Data for All Nests Monitored; Data for Mayfield Analysis; Eggshell thickness, nestling morphological measurements, nestling plasma stable isotopes, and nestling red blood cell oxidative DNA damage; Egg organochlorine pesticide, total PCB, flame retardants, and PCB toxic equivalent concentrations; Fish capture by osprey; Fish pools and size for contaminant analysis; Fish organochlorine pesticide, total PCB and flame retardants concentrations; Data for estimation of p,p’-DDE and total PCB biomagnification from fish to osprey eggs
Categories: Data;
Tags: Bristol, PA,
Delaware Bay,
Delaware River,
Environmental Health,
Indian River Inlet, DE,
This study examined effects of the brominated flame retardant hexabromocyclododecane (HBCD) on the avian endocrine system. Japanese quail (Coturnix japonica) were exposed to multiple doses of HBCD over multiple generations through feed and by maternal deposition into the egg. Liver transcriptomes were examined to identify genes and pathways directly affected by HBCD to better understand the mechanisms of action in birds. RNA was extracted from liver of adults and embryos and analyzed (1x50 bp) on an Illumina HiSeq 2000. NCBI Biosample accessions and the raw counts that were input into the differential expression analysis are provided in this dataset. The raw sequence data are available at the NCBI Sequence Read...
Categories: Data;
Tags: Environmental Health,
Flame Retardants,
Transcriptomics,
USGS Science Data Catalog (SDC),
biota
This work is part of a study of the immunological effects of exposure to alternative flame retardants in avian species. For the pathology portion of the study, hatchling American kestrels (Falco sparverius) were exposed to the flame retardant isopropyl triphenyl phosphate (ITP) and then challenged with a synthetic analogue of viral double-stranded RNA, polyinosinic:polycytidylic acid (poly I:C). Control birds were challenged with vehicle only or vehicle and poly I:C. At euthanasia, spleen, thymus, and bursa of Fabricius were collected and fixed in 10% neutral buffered formalin for histopathological assessment. Slides were processed and stained with hematoxalin and eosin as per standard procedure (Luna 1968). Quantitative...
Human-use pharmaceutical, pesticide, and wastewater indicator compounds were analyzed at the U.S. Geological Survey, National Water Quality Laboratory, Denver, Colorado, in wadeable streams in 4 Regional Stream Quality Assessments: Northeast (NESQA), Southeast (SESQA), Pacific Northwest (PNSQA) and California (CSQA). Multiple (with few exceptions) samplings occurred at each site, during base flow, between 2014 and 2017. Sites were located in the headwaters of perennial, wadeable streams in urban and agricultural watersheds. Site selection and methodology for each assessment can be found in Van Meter and others (2015), Sheibley and others (2015), Van Meter and others (2017), Coles and others (2016), Van Meter and...
Adult walleye (10 females and 10 males) were caught in Fox River (Wisconsin) during April 2014. Total length, weight, and age were determined for each of the walleye. Whole-fish homogenates were prepared during 2017. Lipid concentration and polychlorinated biphenyl (PCB) congener concentrations were determined in each of the homogenates during 2017-2018. For each sample, PCB congener concentrations were summed to yield total PCB concentration. All lipid and PCB congener terminations were made at the University of Michigan School of Public Health in Ann Arbor, Michigan.
The data set includes the macroinvertebrate metrics calculated by IDAS software (Cuffney 2003, USGS OFR 03-172) for the Midwest Stream Quality Assessment (MSQA). Invert data is taxonomic data that has been summarized into variables called metrics that summarize various components of the taxonomic data. The original taxonomic data comes from USGS BioData.
Categories: Data;
Types: Citation;
Tags: Aquatic Biology,
Ecology,
Environmental Health,
Midwest, U.S.,
USGS Science Data Catalog (SDC),
Lead and zinc were mined in the Tri-State Mining District (TSMD) of southwest Missouri, northeast Oklahoma, and southeast Kansas for more than 100 years. The effects of mining on the landscape are still evident, nearly 50 years after the last mine ceased operation. The legacies of mining are the mine waste and discharge of groundwater from underground mines. The mine-waste piles and underground mines are continuous sources of trace metals (primarily lead, zinc, and cadmium) to the streams that drain the TSMD. Many previous studies characterized the horizontal extent of mine-waste contamination in streams but little information exists on the depth of mine-waste contamination in these streams. Characterizing the vertical...
Categories: Data;
Types: Citation;
Tags: Cherokee County, Kansas,
Environmental Health,
Jasper County, Missouri,
Newton County, Missouri,
Ottawa County, Oklahoma,
This dataset contains tabular data for U.S. Environmental Protection Agency’s (EPA) Clean Watersheds Needs Survey (CWNS) wastewater treatment facility information. Literature-based average total nitrogen and total phosphorous concentrations were substituted for wastewater treatment levels reported for each facility because little or no concentration data is reported in the CWNS. Concentrations were based on the treatment levels of raw, primary, secondary, and advanced. Concentration and effluent flow-value data gaps were ‘filled in’ through simple linear assumptions, based on each facility’s responses to the survey in years bracketing the data gap or were based on an un-bracketed single year survey response. Unlike...
Categories: Data;
Tags: Environmental Health,
USGS Science Data Catalog (SDC),
United States of America,
Water Resources,
nutrient loads,
On July 26, 2017, a solution containing approximately 200 kilograms of dissolved sodium bromide was added to the the flooded underground shaft of the Minnesota Mine, near Empire, Colorado. This addition was conducted as part of an effort to determine the degree to which the mine shaft is hydrologically connected to a series of downgradient seeps and springs. These seeps and springs discharge from the hillside and enter Lion Creek, an acidic, metal-rich stream that lies immediately to the west of the Minnesota Mine. A water quality sonde and pressure transducer deployed within the shaft recorded temperature, specific conductance, and stage before, during, and after the addition. The downgradient seeps and springs...
Categories: Data;
Tags: Empire, Colorado,
Environmental Health,
Geochemistry,
Hydrogeology,
Lion Creek,
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