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These data are daily summary checklists of all bird species observed at U.S. Geological Survey, Alaska Science Center (ASC) field camps in Southwest Alaska. Data include species observation details such as observers, dates, location, and number of individuals seen. Included are data from three camps along the Alaska Peninsula, in and around Izembek National Wildlife Refuge ("Izembek NWR", "Cold Bay", and "Neumann Island") during field seasons: 1986-1993.
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This R code (Nest_Cards_QC.R) is used to process the raw legacy nest card data (1985 - 2019) and produce the quality controlled legacy nest card data for analysis and sharing. This code does not quality control the double searched plots (R2 plots in 1995-99), which is done in the file ‘PrepData.R’. Basic operations include transforming missing value to a common code, transforming other variable to match the data dictionary for nest cards, and resolving non-unique observer initials. The code requires the raw data (“1985-2019_Nest Cards_10-24-19_cleaned.xlsx”) and the table of observer names (“Observer Names_1985-2019_10-24-19.xlsx”). The code writes the QC nest card file “Nest_Cards_1985_2019_QC.csv”. Mostly obseration...
Categories: Data, Software; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, All tags...
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Observer-specific population indices for the USFWS Region Migratory Bird Management Arctic Coastal Plain study area. The survey consists of low-level aerial observations of waterfowl on a stratified strip transect design. The resulting data frame is several indices separated by observer and calculated using a standard ratio estimator. These data are output from the R package AKaerial and are also available within that package, see https://github.com/USFWS/AKaerial. The data used to produce these estimates contain known errors. Many but not all of these errors are corrected within the R package AKaerial. These data are presented for historical purposes only. See https://github.com/USFWS/ACP-Mapping and comments within...
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This dataset consists of one table with annual counts from population plots of Black-legged Kittiwakes and Common Murres at two seabird nesting colonies on Gull and Chisik Islands in lower Cook Inlet, Alaska.
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These data are part of the Gulf Watch Alaska (GWA) long-term monitoring program and contain diet data from Black-legged Kittiwakes (BLKI), Rhinoceros Auklets (RHAU), and Tufted puffins (TUPU) located on Middleton Island in Prince William Sound, Gulf of Alaska. The first table consists of information on seabird diet samples including the sampling method and number of prey types identified per sample ("seabirdDiets_foodSample_middletonIsland.csv"). The second table is similar to the first table, however, the samples have been subdivided by individual prey species ("seabirdDiets_samplePrey_middletonIsland.csv"). The third table consists of information specific to sampled prey items, such as prey taxa identification...
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The Yukon-Kuskokwim Delta (YKD) Aerial Breeding Pair Survey provides data on the spring abundance of targeted waterfowl species nesting on the YKD coastal zone in western Alaska. This region supports millions of waterbirds that comprise one of the largest and most important waterfowl breeding grounds in North America, including species of concern such as the red-throated loon (Gavia stellata), emperor goose (Chen canagica), Pacific black brant (Branta bernicla nigricans), common eider (Somateria mollissima), black scoter (Melanitta nigra), long-tailed duck (Clangula hyemalis), and the threatened spectacled eider (Somateria fischeri). The YKD goose, swan, and crane survey was first implemented in 1985 to monitor...
Categories: Data, Project; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, All tags...
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This is a comma delimited text file of the bird observations for the Arctic Coastal Plain survey. These observations have undergone an extensive quality control process that is ongoing and corrected several errors in the source data. Point observation of birds are given in coordinate reference system EPSG:4326 and are accurate only to +/- 500m. The field "Year" gives the calendar year that the survey was flown, "Stratum" gives the transect density strata name, "NavTransect" gives the transect identifier used for navigation by the pilot (this is not necessarily the same as the design transect), and "Obs_Type" is the social group (single, pair, etc.) of the bird observation, "Num" is the number of observation of...
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R code that takes in the nest capture history data (chdata.csv), reformats it for model fitting in Program Mark via the R package RMark. A series of models of increasing complexity are fit and compared using AIC. Output is written to text files for each model but is generally not used or saved. Code can be run to generate model results and R workspaces/ object to inspect parameter estimates. The primary purpose of this code is to explore model structures for predicting detection and as an attempt to reproduce historically used parameter estimates in past nest plot reports (e.g., Fischer et al. 2017 and earlier). Results from ‘Model 7’ are most similar to detection estimates used in the past.
Categories: Data, Software; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, BIOLOGICAL CLASSIFICATION, BIOLOGICAL CLASSIFICATION, All tags...
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These are the observer names, observer initials, year, and unique observer number for all observe that collected data on the YKD nest plot project from 1985 to 2019. This data is used with the nest card data to in various ways, but primarily to calculate cumulative observer experience for nest detection rates. This file is also used for quality control and reconciling non-unique observer initials across years.
Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, All tags...
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This is the YKD egg observation data reformatted from the nest card data (‘Nest_Cards_1985_2019_QC.csv’). The file eggs.R is used to produce this data set, and then this is further summarized into yearly stats on mean initiation and hatch dates to produce the file yearstats.csv.
Categories: Data; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, All tags...
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From 1995 to 1999, a subset of nest plots were searched twice by field crews to estimate nest detection probability by mark-recapture methods. Over the five years, 30 plots were searched twice and over 2700 unique nests were found. From these data, nest detection probability is estimated using a Huggins-type mark recapture model where individual-level covariate effects of nest and observer attributes were estimated. These estimates are then used to predict nest detection rates in other years based on covariates of nests and observers. Nest detection rates are then applied to annual plot search to estimate nest populations for each species in the sampled area.
Categories: Data, Project; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, All tags...
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This data package contains location data collected by the Argos System (CLS America, Inc.) from satellite transmitters attached to 116 Lesser Yellowlegs captured at multiple sites across their breeding and nonbreeding range in North America, 2018-2021. The raw data were processed to accomplish two goals: 1) flag implausible location and 2) remove locations within Joint Base Elmendorf-Richardson (JBER) and Eielson Air Force Base boundaries. Removal of locations in military land boundaries is required due to federal guidelines by Department of Defense (DoD) Public Affairs office and DoD Partners in Flight. Due to data sharing constraints of participating agencies, not all the locations (i.e., latitude and longitude)...
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The imagery and annotations presented here were generated while testing an aerial photographic survey design to improve repeatability, transparency, and estimation of variance for annual population estimates of geese staging at Izembek Lagoon, Alaska. This dataset includes 1) 131,031 .JPG images captured from a small fixed-wing occupied aircraft, usually at an altitude of about 457 m, over Izembek Lagoon; 2) annotations of objects (geese, ducks, and gulls) assigned by an automated algorithm, and 3) manually corrected annotations that were edited by project staff for only those photos automatically identified as containing geese of any species. The photos were captured at predetermined points to systematically sample...
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This data release is composed of seven datasets regarding colonial seabirds and forage fish at two seabird nesting colonies on Gull and Chisik Islands in lower Cook Inlet, Alaska. These data were collected to detect changes in the breeding population of Black-legged Kittiwakes and Common Murres on two nesting colonies in lower Cook Inlet and to compare those counts to baseline counts from 1995-1999. They are part of an ongoing study in lower Cook Inlet, Alaska to assess the recent status of forage fish and seabirds (2000-2020).
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R code that takes in the nest capture history data (chdata.csv), reformats it for model fitting in the Bayesian MCMC software JAGS via the R package jagsUI. Various generalized linear mixed models are fit using a Huggins two occasion capture history model structure as in Program Mark. A series of models of increasing complexity are fit and compared using DIC. Model text is written to text files for each model but is generally not used or saved. Posteriors are saved as Rworkspaces or written to text files for use in population estimation (nostpop.R). Code can be run to generate model results and R workspaces/objects to inspect parameter estimates. The primary purpose of this code is to compare various mixed model...
Categories: Data, Software; Types: Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, ANIMALS/VERTEBRATES, BIOLOGICAL CLASSIFICATION, BIOLOGICAL CLASSIFICATION, All tags...


map background search result map search result map Assessing the Status and Trends of Seabirds and Forage Fish in Lower Cook Inlet, Alaska Bird Species Checklists from USGS Alaska Science Center Field Camps v1.0 Aerial Photo Imagery from Fall Waterfowl Surveys, Izembek Lagoon, Alaska, 2017-2019 Seabird Diet Data Collected on Middleton Island, Gulf of Alaska Bird Species Checklists from USGS Alaska Science Center Field Camps v2.0 Bird Species Checklists from USGS Alaska Science Center Field Camps: Southwest Alaska Arctic Coastal Plain Aerial Survey Bird Observations Alaska Arctic Coastal Plain Aerial Survey Expanded Index Estimates 2007-2023 Alaska Yukon Delta Detection Model Fitting Code Using R and RMark Alaska Yukon Delta Double Observer Nest Plot Detection Alaska Yukon Delta Nest Plot Survey Detection Model Fitting Code Using R and JAGS Alaska Yukon Delta Nest Plot Distance Sampling Field Protocol Alaska Yukon Delta Nest Plot Survey Legacy Nest Card Quality Control R Code Alaska Yukon Delta Nest Plot Survey Legacy Nest Card Data 1985 - 2019 Alaska Yukon Delta Nest Plot Survey Observer Names 1985 - 2019 Alaska Yukon Delta Tidy Egg Data 1985 - 2019 U.S. Fish and Wildlife Service Argos GPS Satellite Tracking Data for Lesser Yellowlegs (Tringa flavipes) Population Plots at Two Seabird Colonies in Lower Cook Inlet, Alaska Common Murre Disturbance Data on Gull Island, Kachemak Bay, Alaska Alaska Yukon-Kuskokwim Delta Aerial Breeding Pair Survey Assessing the Status and Trends of Seabirds and Forage Fish in Lower Cook Inlet, Alaska Common Murre Disturbance Data on Gull Island, Kachemak Bay, Alaska Aerial Photo Imagery from Fall Waterfowl Surveys, Izembek Lagoon, Alaska, 2017-2019 Bird Species Checklists from USGS Alaska Science Center Field Camps: Southwest Alaska Population Plots at Two Seabird Colonies in Lower Cook Inlet, Alaska Seabird Diet Data Collected on Middleton Island, Gulf of Alaska Alaska Yukon Delta Detection Model Fitting Code Using R and RMark Alaska Yukon Delta Double Observer Nest Plot Detection Alaska Yukon Delta Nest Plot Survey Detection Model Fitting Code Using R and JAGS Alaska Yukon Delta Nest Plot Distance Sampling Field Protocol Alaska Yukon Delta Nest Plot Survey Legacy Nest Card Quality Control R Code Alaska Yukon Delta Nest Plot Survey Legacy Nest Card Data 1985 - 2019 Alaska Yukon Delta Nest Plot Survey Observer Names 1985 - 2019 Alaska Yukon Delta Tidy Egg Data 1985 - 2019 Alaska Yukon-Kuskokwim Delta Aerial Breeding Pair Survey Alaska Arctic Coastal Plain Aerial Survey Expanded Index Estimates 2007-2023 Arctic Coastal Plain Aerial Survey Bird Observations Bird Species Checklists from USGS Alaska Science Center Field Camps v1.0 Bird Species Checklists from USGS Alaska Science Center Field Camps v2.0 U.S. Fish and Wildlife Service Argos GPS Satellite Tracking Data for Lesser Yellowlegs (Tringa flavipes)