Genetic Data from Arctic, Polar, and Saffron Cod and Walleye Pollock, Alaska and Canada, 2011-2017

Fragment data from 11 nuclear microsatellite loci and sequence data from the mitochondrial cytochrome b gene were gathered from Arctic cod (Boreogadus saida) in the Beaufort and Chukchi seas. Mitogenomic analyses of Arctic cod and three other co-distributed gadoids (Polar cod [Arctogadus glacialis], Saffron cod [Eleginus gracilis], Walleye Pollock [Gadus chalcogrammus]) were also completed. Transcriptomic analyses of Arctic cod were used to identify genes associated with environmental perturbations. Genome-wide scans using RAD-Seq of Arctic cod and the co-distributed Polar Cod were collected.

Categories: Data; Tags: Alaska, Aleutian Islands, Aquatic Biology, Aquatic ecosystems, Aquatic sciences, All tags... Arctic cod, Arctogadus glacialis, Beaufort Sea, Beaufort Sea, Bering Sea, Biota, Boreogadus saida, Canada, Chukchi Sea, DNA sequencing, DNA, Mitochondrial, Eleginus gracilis, Environment, Fish, Fisheries, Gadus chalcogrammus, Gene flow, Genetic structure, Genetic variance, Genetics, Genetics, Genomics, Gulf of Alaska, Gulf of Saint Lawrence, Marine habitat, Microsatellite Repeats, Norton Sound, Nova Scotia, Polymerase chain reaction, Population dynamics, Population genetics, Saffron cod, Systematics and taxonomy, USGS Science Data Catalog (SDC), Walleye Pollock, Wildlife Biology, Yukon Territory, Fewer tags

Genetic Data from Cooper's Hawks (Accipiter cooperii), North America

This data set describes nuclear microsatellite genotypes derived from six autosomal loci (AgCA222, Age7.1JT, BV13, BV20, NVH206, NVH195-2) in Cooper's Hawks. Samples originated from blood samples collected from live trapped birds. Version History: First release: December 2020 Revised: February 2022 (ver. 2.0)

Categories: Data; Tags: Accipiter cooperii, AgCA222, Age7.1JT, Alleles, Animals/Vertebrates, All tags... BV13, BV20, Biota, Birds, Birds of prey, British Columbia, Cooper's Hawk, DNA, Eagles/Falcons/Hawks and Allies, Environment, Gene Flow, Genetic Markers, Genetics, Genetics, Genotype, Microsatellite Repeats, NVH195-2, NVH206, North Dakota, Polymerase chain reaction, Population Genetics, Raptors, Site Fidelity, Terrestrial ecosystems, USGS Science Data Catalog (SDC), Wildlife, Wildlife Biology, Wisconsin, Fewer tags

Eelgrass (Zostera marina) Microsatellite DNA Data, Pacific Coast of North America, 2000-2009

This data set contains genetic information collected from eelgrass (Zostera marina) populations along the Pacific coast of North America from Alaska to Baha California. A total of 447 samples were collected comprising 401 unique individuals (genets) and 46 clones (ramets) from which 10 microsatellite DNA loci were obtained.

Categories: Data; Types: Citation; Tags: Alleles, Angiosperms (Flowering Plants), Aquatic Biology, Aquatic ecosystems, Bahia Magdelena, All tags... Bahia San Quintin, Biota, Botany, Coastal habitat, DNA, Environment, Estero Punta Banda, Gene flow, Genetic diversity, Genetic markers, Genetic structure, Genetic variance, Genetics, Genetics, Genotype, Izembek Lagoon, Kinzarof Lagoon, Kuskokwim Shoals, Microsatellite repeats, Monocots, Montague Island, Monterey Bay, Nakwasina Bay, Plants, Polymerase chain reaction, Population genetics, Safety Sound, Saint Catherine Cove, Seagrass, Shallow Bay, Simeonof Island, Togiak Bay, USGS Science Data Catalog (SDC), Unga Island, Wide Bay, Yaquina Bay, Fewer tags

Enteroctopus Sampling Effects on Genetic Data, Prince William Sound, Alaska, 2012-2015

These are genetic data collected from replicated samples of 21 Enteroctopus (E. dofleini or a cryptic lineage) in Prince William Sound Alaska to evaluate tissue type, DNA extraction method, and time until analyses are completed on data reliability. Data collected from all samples include two microsatellites identified as possible lineage indicators, and nine microsatellite loci previously identified as polymorphic in both lineages. DNA sequence data from 528 bp of the octopine dehydrogenase (OCDE) gene were also collected.

Categories: Data; Tags: Alaska, Amino Acid Oxidoreductases, Animals/Invertebrates, Biodiversity, Biodiversity, All tags... Biota, Cephalopods, DNA, DNA sequencing, Electrophoresis, Enteroctopus, Environment, Genetic Markers, Genetic diversity, Genetics, Genetics, Marine ecosystems, Microsatellite Repeats, Mollusks, Octopus, Polymerase chain reaction, Population genetics, Prince William Sound, Species diversity, Systematics and taxonomy, USGS Science Data Catalog (SDC), Wildlife Biology, Fewer tags

Peregrine Falcon (Falco peregrinus) mtDNA and Microsatellite Genetic Data, Alaska, Canada and Russia, 1880-2012

This data set provides sample information, microsatellite genotype, and NCBI accession numbers for mitochondrial DNA sequences of peregrine falcons (Falco peregrinus) from North America and Russia. Version History: First release: January 2020 Revised: June 2022 (ver. 2.0)

Categories: Data; Tags: Alaska, Alberta, Alleles, Animals/Vertebrates, Biodiversity, All tags... Biota, Birds, Birds of prey, British Columbia, Canada, DNA, Eagles/Falcons/Hawks and Allies, Environment, Falco peregrinus, Gene Flow, Genetic Diversity, Genetic Markers, Genetic Variance, Genetics, Genetics, Genotype, Microsatellite Repeats, Northwest Territories, Nunavut, Peregrine Falcon, Polymerase chain reaction, Population Genetics, Raptors, Russia, Saskatchewan, Terrestrial ecosystems, USGS Science Data Catalog (SDC), Washington, Wildlife, Wildlife Biology, Fewer tags

Microsatellite Genetic Data for Sea Sandwort (Honckenya peploides) and Merckia (Wilhelmsia physodes), Alaska, 2009-2016

This dataset contains sampling information and genetic data of 12 novel microsatellite loci developed and polymorphic in the Sea Sandwort (Honckenya peploides) and screened in Merckia (Wilhelmsia physodes) from Alaska. The allele sizes for the 12 microsatellite loci developed in this study are included for two populations of Sea Sandwort (Fossil Beach, Kodiak and Egg Bay, Atka) and one population of Merckia (upper Coleen River, Brooks Range).

Categories: Data; Tags: Alaska, Aleutian Islands, Angiosperms (Flowering Plants), Biogeography, Biota, All tags... Botany, Coastal Ecosystems, Dicots, Environment, Gene flow, Genetic diversity, Genetic diversity, Genetic variance, Genetics, Genetics, High-Throughput Nucleotide Sequencing, Indigenous vegetation, Microsatellite repeats, Plants, Polymerase chain reaction, Population dynamics, Population genetics, Ruderal environments, Seed dispersal, Terrestrial ecosystems, Terrestrial environments, USGS Science Data Catalog (SDC), Fewer tags

Genetic Data from Wolverine (Gulo gulo) of North America

These data are comprised of two tables, one table containing wolverine (Gulo gulo) sample and genetic information for 20 microsatellite loci (Gg10-1, Gg25, Gg37-2, Gg42-1, Gg192-1, Gg443, Gg452, Gg454, Gg465, Gg471, Gg473, Gg-3-1, Gg-4, Gg-7-1, Ggu_216-1, Lut604, Ma-3-1, Mvis075, Tt-1, and Tt-4) and genetic sex determination results from North America and one Russian wolverine. All samples were obtained from collections at the University of Alaska Museum of the North or the University of New Mexico’s Museum of Southwestern Biology. The second table provides complete primer information for the genetic markers since several were redesigned from their originally-published sequences for this study.

Categories: Data; Tags: Alaska, Alleles, Animals/Vertebrates, Biota, British Columbia, All tags... Canada, Carnivores, Chukotka, DNA, DNA Primers, Environment, Gene Flow, Genetic diversity, Genetic markers, Genetic structure, Genetics, Genetics, Gulo gulo, Kenai Peninsula, Mammals, Martens/Weasels/Wolverines, Microsatellite Repeats, Nunavut, Polymerase chain reaction, Population Genetics, Russia, Sexing (plants & animals), Terrestrial ecosystems, USGS Science Data Catalog (SDC), Wildlife, Wildlife Biology, Wolverine, Yukon, Fewer tags

Detection of Seagrass Pathogens Using Environmental DNA (eDNA), North Pacific, 2016-present

This data set is comprised of one table with sampling information and NCBI BioProject accession numbers for sequence information of this amplicon-based study targeting Labyrinthula, Phytophthora, and Halophytophthora of known pathogenic and non-pathogenic [to eelgrass (Zostera marina)] strains from eDNA samples. eDNA samples included water, sediment, and eelgrass from Notsuke Wan (Cove) Japan, Safety Sound, Izembek Lagoon, Port Moller, Chignik Lagoon, and Frederick Sound, Alaska and cloacal swabs from waterfowl hunted near Cold Bay Alaska. Replicate samples and multiple sampling dates of the same location were included. Highly conserved primers which could differentiate species of interest were developed for four...

Categories: Data; Tags: Alaska, Animals/Vertebrates, Aquatic Biology, Aquatic ecosystems, Biological informatics, All tags... Biota, Birds, DNA Primers, DNA, Mitochondrial, Databases, Nucleic acid, Decline (Plant disease), Disease detection, Disease spread, Disease vectors, Ducks/Geese/Swans, Ecological processes, Ecosystem, Ecosystem diversity, Environment, Environmental DNA, Environmental DNA, Feasibility studies, Field sampling, Genetics, Halophytophthora, Hokkaido, Izembek National Wildlife Refuge, Japan, Labyrinthula sp., Labyrinthula zosterae, Marine biology, Marine environment monitoring, Mitochondrial DNA, Ocean circulation, Oceans and Seas, Phytophthora gemini, Plants, Species/Population Interactions, USGS Science Data Catalog (SDC), Zostera marina, eDNA, Fewer tags

Coho Salmon (Oncorhynchus kisutch) Genetic Data, Glacier Bay National Park, Alaska (1994-1999)

These are genetic data collected from over 700 individual coho salmon (Oncorhynchus kisutch) from 17 streams and rivers within Glacier Bay Alaska and 2 rivers outside the bay. Data collected from all samples include one nuclear gene intron, Growth Hormone-1, and eight microsatellite loci.

Categories: Data; Tags: Alaska, Animals/Vertebrates, Aquatic Biology, Aquatic ecosystems, Aquatic sciences, All tags... Biota, Climate indicators, DNA, Environment, Fish, Fisheries, Gene Flow, Genetic markers, Genetics, Genetics, Glacier Bay National Park, Glaciers/ice sheets, Microsatellite Repeats, Oncorhynchus kisutch, Polymerase chain reaction, Population Genetics, Range changes, Rivers, Site Fidelity, Species Migration, Surface water, Terrestrial hydrosphere, USGS Science Data Catalog (SDC), Wildlife, Wildlife Biology, Fewer tags

Genetic Data from Barrow's Goldeneye and Common Goldeneye

This data set describes nuclear microsatellite genotypes derived from eight autosomal loci (Aph02, Aph11, Aalµ1, Sfiµ4, Smo4, Smo7, Smo12, and Sfiµ8) and accession numbers for double digest restriction-site associated DNA (ddRAD) sequences.

Categories: Data; Tags: Alaska, Alleles, Animals/Vertebrates, Barrow's Goldeneye, Biota, All tags... Birds, British Columbia, Bucephala clangula, Bucephala islandica, Canada, Coastal ecosystems, Common Goldeneye, DNA, Denmark, Environment, Estuarine habitat, Gene flow, Genetic markers, Genetics, Genetics, Genotype, Microsatellite Repeats, Migratory birds, Ontario, Polymerase chain reaction, Population genetics, Terrestrial ecosystems, USGS Science Data Catalog (SDC), Waterfowl, Waterfowl, Wildlife, Wildlife Biology, Yukon Territory, Fewer tags

Environmental DNA qPCR detection results and covariates from Idaho, Missouri, Montana, and New York rivers sampled in 2023

This dataset contains quantitative results from, and covariate attributes of, environmental DNA water samples collected across multiple rivers in 2023. Samples were analyzed for eDNA of round goby in the Hudson River (NY), westslope cutthroat trout (Oncorhynchus clarkii lewisi) in Cherry Creek (MT), lake trout (Salvelinus namaycush) and Spectaclecase mussels (Cumberlandia monodonta) in Big Piney River (MO), and rainbow trout (O. mykiss) and Western Pearlshell (Margaritifera falcata) in Loggers Creek (ID).

Categories: Data; Tags: Aquatic Biology, Ecology, Idaho, Missouri, Montana, All tags... New York, USGS Science Data Catalog (SDC), biota, environmental DNA, fish, genetics, Fewer tags

Specimen and Genetic Information for Phylogeny of Blue-winged Ducks (Anas spp.), 2001-2011

Data set containing specimen information and GenBank accession numbers for five nuclear DNA introns and mitochondrial DNA control region sequence information for the blue-winged duck complex of species sampled in Africa, Asia, Australia, and North and South America.

Categories: Data; Tags: Alaska, Animals/Vertebrates, Argentina, Australia, Azzerbaijan, All tags... Biological Classification, Biota, Birds, Bolivia, California, Canada, Colorado, Columbia, Ducks/Geese/Swan, Earth Science, Environment, Evolution, Genetic Diversity, Genetics, Genetics, Population, Guyana, Kazakhstan, Mongolia, Mozambique, New Zealand, North Dakota, Oregon, Peru, Phylogeny, Phylogeography, Russia, South Africa, South Dakota, Taxonomy, USGS Science Data Catalog (SDC), Utah, Wildlife Biology, Zimbabwe, Fewer tags

Blood Parasite Infection Data from Northwestern Crows (Corvus caurinus), Alaska, 2007-2008

This data set consists of two tables associated with a study of Haemosporidian parasite infection in Northwestern Crows (Corvus caurinus) sampled at six locations throughout southcentral and southeast Alaska in 2007-2008. The first table contains species, location, banding, and morphometric data for all samples. The second table contains results from heamosporidian parasite screening of crow blood samples using molecular techniques. Genomic DNA was extracted from blood samples and screened for the presence of Haemoproteus, Plasmodium, and Leucocytozoon blood parasites using a nested-PCR method. Parasite genetic data is provided as GenBank accession numbers for any samples that tested positive for haemosporidian...

Categories: Data; Tags: Alaska, Animals/Vertebrates, Avian physiology, Biological science disciplines, Biology, All tags... Biosphere, Biota, Birds, Birds, Blood parasites, DNA Sequencing, Disease, Disease vectors, Ecological dynamics, Ecology, Environment, Genetic diversity, Genetic variance, Genetics, Genetics, Genetics, Haemosporidians, Haines, Hematozoa, Homer, Juneau, Kenai, Life sciences, Natural science disciplines, Parasitic diseases, Parasitism, Parasitology, Parasitology, Pathologic processes, Perching birds, Polymerase chain reaction, Sciences, Seward, Species/Population interactions, USGS Science Data Catalog (SDC), Valdez, Vector borne diseases, Wildlife Biology, Wildlife Disease, Wildlife biology, Zoology, Fewer tags

Greater White-Fronted Goose Genetic Data, Circumpolar, 1988-2009

This data set describes nuclear microsatellite genotypes derived from eight autosomal loci (BCA6, BCA9, BCA11, BCA5, CRG, OXY13, TSP1.20.09 and TSP1.20.46) and a 366 base pair portion of the mitochondrial control region. A total of 665 Greater White-fronted Geese were examined by genotyping and 518 by sequencing with samples coming from its circumpolar range representing multiple flyways (Midcontinent, Pacific, Greenland, Palearctic). The sex of most samples was determined in the field by morphology or cloacal examination. Version History: First release: June 2018 Revised: July 2018 (ver. 2.0)

Categories: Data; Tags: Alaska, Alleles, Anadyr, Anderson River, Animals/vertebrates, All tags... Anser albifrons, Biota, Birds, Bristol Bay, Brooks Range, Colville River, Cook Inlet, DNA, Ducks/Geese/Swans, Environment, Gene Flow, Genetic Markers, Genetic Variance, Genetics, Genetics, Genotype, Greater White-Fronted Goose, Greenland, Innoko National Wildlife Refuge, Ireland, Kanuti National Wildife Refuge, Kava, Kent Peninsula, Kolyma, Koyukuk National Wildlife Refuge, Kuparuk River, Kuskokwim River, Lena, MacKenzie River, Microsatellite Repeats, Molecular biology, North Slope, Northwest Territories, Nunavut, Old Crow Flats, Point Lay, Polymerase chain reaction, Population differentiation, Population genetics, Queen Maud Gulf, Rasmussen Basin, Selawik National Wildlife Refuge, Speciation (biological), Taimyr, Terrestrial Ecosystems, Terrestrial ecosystems, USGS Science Data Catalog (SDC), Vaygach, Victoria Island, Wildlife, Wildlife Biology, Yana, Yukon, Yukon River, Yukon–Kuskokwim Delta, Fewer tags

Genetic Microsatellite Data from Sorex, Based on Holarctic Sampling

This data set describes nuclear microsatellite genotypes derived from 17 autosomal loci (Sug001, Sug002, Sug003, Sug006, Sug007, Sug008, Sug009, Sug010, Sug011, Sug012, Sug019, Sug021, Sug022, Sug023, Sug024, Sug029, Sug038) in shrews, Sorex spp.

Categories: Data; Tags: Alaska, Alleles, Anadyr, Animals/Vertebrates, Biota, All tags... Chukotka, DNA, Environment, Gene Flow, Genetic diversity, Genetic markers, Genetics, Genetics, Genotype, Insectivora, Kamchatka Peninsula, Mammals, Microsatellite repeats, Polymerase chain reaction, Pribilof Islands, Russia, Shrews, Sorex camtschatica, Sorex cinereus, Sorex jacksoni, Sorex portenkoi, Sorex pribilofensis, Sorex ugyunak, Terrestrial ecosystems, Tundra ecosystems, USGS Science Data Catalog (SDC), Wildlife, Wildlife Biology, Fewer tags

DNA Microsatellite and Sex Identification Marker Screening for Mexican Spotted Owl (Strix occidentalis lucida)

Two tables of data are included in this data release. The first table provides screening results for 32 previously described and/or published microsatellites and 1 sexing marker, primer redesigns for use in Mexican Spotted Owls in this data release, and size of markers in Mexican Spotted Owls. The second table provides microsatellite and sexing marker results for 10 tissue and 98 feather samples for 11 microsatellite markers identified as variable in initial marker screenings.

Categories: Data; Tags: Alleles, Animals/Vertebrates, Apache-Sitgreaves National Forest, Arizona, Biota, All tags... Birds, Birds of prey, Breeding sites, Capture-recapture studies, Coconino National Forest, DNA, DNA Primers, Environment, Genetic diversity, Genetic markers, Genetics, Genetics, Genotype, Grand Canyon National Park, Kaibab National Forest, Los Alamos, Mexican Spotted Owl, Microsatellite Repeats, New Mexico, Polymerase chain reaction, Raptors, Sexing (plants & animals), Strix occidentalis lucida, Terrestrial ecosystems, Threatened species, Tonto National Forest, USGS Science Data Catalog (SDC), Walnut Canyon National Monument, Wildlife, Wildlife Biology, Fewer tags

Brant (Branta bernicla) Genetic Data from North America, Europe, and Asia

This data package is comprised of one table with genetic data from Brant (Branta bernicla). Data include sampling location and allele sizes of 14 microsatellite loci.

Categories: Data; Tags: Alaska, Alleles, Animals/Vertebrates, Aquatic ecosystems, Biota, All tags... Birds, Brant, Branta bernicla, Canada, Coastal ecosystems, DNA, DNA Primers, DNA sequencing, DNA, Mitochondrial, Ducks/Geese/Swans, Environment, Gene Flow, Genetic diversity, Genetic markers, Genetics, Genetics, Genotype, Iceland, Ireland, Marine ecosystems, Microsatellite Repeats, Migratory birds, Polymerase chain reaction, Population Genetics, Russia, The Netherlands, USGS Science Data Catalog (SDC), Waterfowl, Wetland ecosystems, Wildlife, Wildlife Disease, Fewer tags

Genomic Data from Ptarmigan and Grouse, Alaska

This data set provides sample data and NCBI accession information for genomic sequencing of ptarmigan and grouse from Alaska. Version History: First release: July 2020 Revised: December 2021 (ver. 2.0)

Categories: Data, Data Release - Revised; Tags: Alaska, Animals/Vertebrates, Biota, Birds, Bonasa umbellus, All tags... DNA sequencing, Dendragapus fuliginosus, Environment, Falcipennis canadensis, Fowl, Galliformes, Genetic diversity, Genetics, Genomics, Herbivores, Lagopus lagopus, Lagopus leucura, Lagopus muta, Population Genetics, Rock ptarmigan, Ruffed grouse, Sharp-tailed grouse, Sooty grouse, Spruce grouse, Terrestrial ecosystems, Transcriptome, Tundra ecosystems, Tympanuchus phasianellus, USGS Science Data Catalog (SDC), Upland game birds, White-tailed ptarmigan, Wildlife, Wildlife Biology, Willow ptarmigan, ddrad, double digestion restriction associated DNA, exon capture, whole genome, whole methylome, whole mitogenome, whole transcriptome, Fewer tags

Genetic Data for Merlin (Falco columbarius) and Cross-Species Microsatellite Amplification in Select Falco Species, North America

This data set contains allele sizes for 8 previously published and 16 novel microsatellite loci, and one microsatellite redesigned for amplification in Merlins (Falco columarius) associated with circadian clock control and polymorphism that has been associated with juvenile dispersal and migratory behavior in some avian species for Merlin (Falco columbarius) from North America (n=21). Allele sizes for the 16 microsatellite loci developed in this study are included for 12 Gyrfalcons (F. rusticolus) and 13 Peregrine Falcons (F. peregrinus). Additional population level data for Merlins and mtDNA will be added to this data release in the future.

Categories: Data; Tags: Alaska, Alleles, Animals/Vertebrates, Biota, Birds, All tags... Birds, Birds of prey, Cedar Grove Hawk Research Station, DNA, DNA sequencing, Eagles/Falcons/Hawks and Allies, Environment, Falco columbarius, Falco peregrinus, Falco rusticolus, Falconiformes, Genetic diversity, Genetic markers, Genetics, Genetics, Hawk Ridge Bird Observatory, Microsatellite Repeats, Migratory birds, Minnesota, North Slope, Polymerase chain reaction, Polymorphism, Genetic, Population dynamics, Population genetics, Site Fidelity, Southcentral Alaska, USGS Science Data Catalog (SDC), Wildlife, Wildlife Biology, Wisconsin, Yukon Delta, Yukon-Kuskokwim Delta, Fewer tags

Larus Gull Microsatellite DNA Data, 2006-2009

This data set describes nuclear microsatellite genotypes derived from eleven autosomal loci (Lar24, Lar12, Lar26, Lar19, Rbg13, K16, Rbg18, Hg18, Hg16, Hg25, Rbg29). A total of 651 Larus gulls were examined for this study with samples collected throughout North America, Europe, Russia, and South America.

Categories: Data; Tags: Alaska, Alleles, Animals/Vertebrates, Biodiversity, Biota, All tags... Birds, Coastal ecosystems, DNA, DNA sequencing, Environment, Europe, Evolution, Gene Flow, Genetic Markers, Genetic diversity, Genetic variance, Genetics, Genetics, Genotype, Microsatellite Repeats, Polymerase chain reaction, Population Genetics, Russia, South America, Systematics and taxonomy, USGS Science Data Catalog (SDC), Waders/Gulls/Auks and Allies, Wildlife, Wildlife Biology, Fewer tags