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Fragment data from 11 nuclear microsatellite loci and sequence data from the mitochondrial cytochrome b gene were gathered from Arctic cod (Boreogadus saida) in the Beaufort and Chukchi seas. Mitogenomic analyses of Arctic cod and three other co-distributed gadoids (Polar cod [Arctogadus glacialis], Saffron cod [Eleginus gracilis], Walleye Pollock [Gadus chalcogrammus]) were also completed. Transcriptomic analyses of Arctic cod were used to identify genes associated with environmental perturbations. Genome-wide scans using RAD-Seq of Arctic cod and the co-distributed Polar Cod were collected.
Categories: Data;
Tags: Alaska,
Aleutian Islands,
Aquatic Biology,
Aquatic ecosystems,
Aquatic sciences,
This data set describes nuclear microsatellite genotypes derived from six autosomal loci (AgCA222, Age7.1JT, BV13, BV20, NVH206, NVH195-2) in Cooper's Hawks. Samples originated from blood samples collected from live trapped birds. Version History: First release: December 2020 Revised: February 2022 (ver. 2.0)
This data set contains genetic information collected from eelgrass (Zostera marina) populations along the Pacific coast of North America from Alaska to Baha California. A total of 447 samples were collected comprising 401 unique individuals (genets) and 46 clones (ramets) from which 10 microsatellite DNA loci were obtained.
Categories: Data;
Types: Citation;
Tags: Alleles,
Angiosperms (Flowering Plants),
Aquatic Biology,
Aquatic ecosystems,
Bahia Magdelena,
These are genetic data collected from replicated samples of 21 Enteroctopus (E. dofleini or a cryptic lineage) in Prince William Sound Alaska to evaluate tissue type, DNA extraction method, and time until analyses are completed on data reliability. Data collected from all samples include two microsatellites identified as possible lineage indicators, and nine microsatellite loci previously identified as polymorphic in both lineages. DNA sequence data from 528 bp of the octopine dehydrogenase (OCDE) gene were also collected.
Categories: Data;
Tags: Alaska,
Amino Acid Oxidoreductases,
Animals/Invertebrates,
Biodiversity,
Biodiversity,
This data set provides sample information, microsatellite genotype, and NCBI accession numbers for mitochondrial DNA sequences of peregrine falcons (Falco peregrinus) from North America and Russia. Version History: First release: January 2020 Revised: June 2022 (ver. 2.0)
This dataset contains sampling information and genetic data of 12 novel microsatellite loci developed and polymorphic in the Sea Sandwort (Honckenya peploides) and screened in Merckia (Wilhelmsia physodes) from Alaska. The allele sizes for the 12 microsatellite loci developed in this study are included for two populations of Sea Sandwort (Fossil Beach, Kodiak and Egg Bay, Atka) and one population of Merckia (upper Coleen River, Brooks Range).
Categories: Data;
Tags: Alaska,
Aleutian Islands,
Angiosperms (Flowering Plants),
Biogeography,
Biota,
These data are comprised of two tables, one table containing wolverine (Gulo gulo) sample and genetic information for 20 microsatellite loci (Gg10-1, Gg25, Gg37-2, Gg42-1, Gg192-1, Gg443, Gg452, Gg454, Gg465, Gg471, Gg473, Gg-3-1, Gg-4, Gg-7-1, Ggu_216-1, Lut604, Ma-3-1, Mvis075, Tt-1, and Tt-4) and genetic sex determination results from North America and one Russian wolverine. All samples were obtained from collections at the University of Alaska Museum of the North or the University of New Mexico’s Museum of Southwestern Biology. The second table provides complete primer information for the genetic markers since several were redesigned from their originally-published sequences for this study.
These are genetic data collected from over 700 individual coho salmon (Oncorhynchus kisutch) from 17 streams and rivers within Glacier Bay Alaska and 2 rivers outside the bay. Data collected from all samples include one nuclear gene intron, Growth Hormone-1, and eight microsatellite loci.
Categories: Data;
Tags: Alaska,
Animals/Vertebrates,
Aquatic Biology,
Aquatic ecosystems,
Aquatic sciences,
This data set describes nuclear microsatellite genotypes derived from eight autosomal loci (Aph02, Aph11, Aalµ1, Sfiµ4, Smo4, Smo7, Smo12, and Sfiµ8) and accession numbers for double digest restriction-site associated DNA (ddRAD) sequences.
This data set describes nuclear microsatellite genotypes derived from eight autosomal loci (BCA6, BCA9, BCA11, BCA5, CRG, OXY13, TSP1.20.09 and TSP1.20.46) and a 366 base pair portion of the mitochondrial control region. A total of 665 Greater White-fronted Geese were examined by genotyping and 518 by sequencing with samples coming from its circumpolar range representing multiple flyways (Midcontinent, Pacific, Greenland, Palearctic). The sex of most samples was determined in the field by morphology or cloacal examination. Version History: First release: June 2018 Revised: July 2018 (ver. 2.0)
This data package is comprised of one table with genetic data from Brant (Branta bernicla). Data include sampling location and allele sizes of 14 microsatellite loci.
This data set provides sample data and NCBI accession information for genomic sequencing of ptarmigan and grouse from Alaska. Version History: First release: July 2020 Revised: December 2021 (ver. 2.0)
Categories: Data,
Data Release - Revised;
Tags: Alaska,
Animals/Vertebrates,
Biota,
Birds,
Bonasa umbellus,
This data set contains allele sizes for 8 previously published and 16 novel microsatellite loci, and one microsatellite redesigned for amplification in Merlins (Falco columarius) associated with circadian clock control and polymorphism that has been associated with juvenile dispersal and migratory behavior in some avian species for Merlin (Falco columbarius) from North America (n=21). Allele sizes for the 16 microsatellite loci developed in this study are included for 12 Gyrfalcons (F. rusticolus) and 13 Peregrine Falcons (F. peregrinus). Additional population level data for Merlins and mtDNA will be added to this data release in the future.
This data set describes nuclear microsatellite genotypes derived from eleven autosomal loci (Lar24, Lar12, Lar26, Lar19, Rbg13, K16, Rbg18, Hg18, Hg16, Hg25, Rbg29). A total of 651 Larus gulls were examined for this study with samples collected throughout North America, Europe, Russia, and South America.
This data set is comprised of one table with sampling information and allele sizes for 69 individual Northern Fulmars (Fulmarus glacialis) from Chagulak Island, Alaska and Hafnarey Island, Iceland. Fulmar allele sizes are provided for 10 previously published and 26 novel microsatellite loci. Additionally, allele sizes for the 26 microsatellite loci developed in this study are included for Arctic Terns (Sterna paradisaea, n=4), Common Murres (Uria aalge, n=6), Crested Auklets (Aethia cristatella, n=6), Fork-tailed Storm Petrels (Oceanodroma furcata, n=5), Marbled Murrelets (Brachyramphus marmoratus, n=5), Common Gulls (Larus canus, n=5), Pelagic cormorants (Phalacrocorax pelagicus, n=5), and Thick-billed Murres (Uria...
Categories: Data;
Tags: Alaska,
Albatrosses/Petrels and Allies,
Alleles,
Animals,
Animals/Vertebrates,
This data set provides NCBI accession numbers for nucleotide sequence data derived from a mitochondrial DNA locus (control region) and double digest restriction-site associated DNA (ddRAD).
The geographically closed, non-migratory populations of endangered Laysan Teal (Anas laysanensis) were sampled in the wild. This species was once widespread across the Hawaiian archipelago, but became isolated on Laysan Island (415 ha) from the mid-1800s until 2004 when a translocation to Midway Atoll (596 ha) was undertaken to reduce extinction risks. We compared genetic diversity and quantified variation at microsatellite loci sampled from 229 individuals from the wild populations at Laysan Island (1999–2009) and Midway Atoll (2007–2010; n = 133 Laysan, n = 96 Midway birds). We identified polymorphic markers by screening nuclear microsatellites (N = 83). Low nuclear variation was detected, consistent with the...
This data set describes nuclear microsatellite genotypes derived from twelve autosomal loci (6AB, Aph02, Aph08, Aph19, Aph23, Bca10, Bca11, Hhi5, Sfi11, Smo07, Smo09, and CRG), and two Z-linked microsatellite loci (Bca4 and Smo1). A total of 111 Long-tailed Ducks were examined for this genotyping with samples coming from the two primary breeding locales within Alaska (Arctic Coastal Plain of Alaska and the Yukon Delta, Western Alaska) and a representative locale in the central Canadian Arctic (Queen Maud Gulf Bird Sanctuary, Nunavut, Canada). The sex of most samples was determined in the field by plumage and later confirmed by using the CHD molecular sexing protocol (Griffiths et al., 1998).
This data set contains allele sizes for 30 individuals of 9 previously published and 20 novel microsatellite loci and the molecular sex verification (n = 31) of Emperor Geese (Chen canagica) from various locations across Alaska. The allele sizes for the 20 microsatellite loci developed in this study are included for 10 White-fronted Geese (Anser albifrons) from Selawik, 11 Black Brant (Branta bernicla nigricans) from Kigigak Island, 10 Canada Geese (Branta canadensis) from Copper River Delta, and 9 Cackling Geese (Branta hutchinsii) from lower Kashunuk River (Hock Slough) and Tutakoke River. Version History: First release: October 2017 Revised: August 2022 (ver. 1.1)
The dataset focusing on research publications related to the American horseshoe crab (Limulus polyphemus) and ecological studies over multiple decades. The dataset contains detailed information about individual research publications, including: Year and Decade of publication. Publication Title and a Link to access the document. Classification of publications based on their relation to either Ecology/Management/Conservation or Physiology/Morphology/Genetics/Evolution.
Categories: Data;
Tags: Biodiversity,
Coastal Habitat,
Conservation,
Ecological Management,
Habitat Loss,
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