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Filters Contacts (Less) Western Ecological Research Center Ecosystems U.S. Geological Survey - ScienceBase U.S. Geological Survey, Western Ecological Research Center Daniel F Shryock Todd C Esque Michael P Chenaille Peter S Coates Lesley A DeFalco Brian J Halstead Karen M Thorne Kevin J Buffington U.S. Geological Survey Josh T Ackerman Josh Adams Jonathan P Rose Mark Ricca Barbara E Kus Brianne E Brussee Adrian J Das Michael L Casazza Michael C Kenner Amy Vandergast U.S. Geological Survey - ScienceBase Shawn T O'Neil Cory T Overton Jonathan J Felis Patrick M Kleeman Sarah H Peterson Robert C Klinger Rich D Inman M. Tim Tinker Julie L Yee Brian B Hatfield Jon E Keeley Kevin D Lafferty Teresa J Brennan-Kane Suellen Lynn John Y Takekawa Laurie A Hall Phillip J van Mantgem Isa Woo Joseph A Tomoleoni Erika N Sanchez-Chopitea Emily (Emma) C. Kelsey David J Delehanty Dustin A Wood Matthew L Brooks Nathan L Stephenson Elliott L Matchett More... View Results as: JSON ATOM CSV

Species Distribution Model (SDM) for Stephanomeria parryi in the Mojave Desert Preserving native species diversity is fundamental to ecosystem conservation. Selecting appropriate native species for use in restoration is a critical component of project design and may emphasize species attributes such as life history, functional type, pollinator services, and nutritional value for wildlife. Determining which species are likely to establish and persist in a particular environment is a key consideration. Species distribution models (SDMs) characterize relationships between species occurrences and the physical environment (e.g., climate, soil, topographic relief) and provide a mechanism for assessing which species may successfully propagate at a restoration site. In conjunction with information... Categories: Data; Types: Downloadable, GeoTIFF, Map Service, Raster; Tags: Arizona, California, Mojave, Nevada, Utah, All tags... biogeography, biota, habitats, maps and atlases, native plant materials development, native species, species distribution model, Fewer tags Predictive Maps of Fuel Break Effectiveness by Treatment Type and Underlying Resilience to Disturbance and Resistance to Invasion Across the Western U.S. Escalated wildfire activity within the western U.S. has widespread societal impacts and long-term consequences for the imperiled sagebrush (Artemisia spp.) biome. Shifts from historical fire regimes and the interplay between frequent disturbance and invasive annual grasses may initiate permanent state transitions as wildfire frequency outpaces sagebrush communities’ innate capacity to recover. Therefore, wildfire management is at the core of conservation plans for sagebrush ecosystems, especially critical habitat for species of conservation concern such as the greater sage-grouse (Centrocercus urophasianus; hereafter sage-grouse). Fuel breaks help facilitate wildfire suppression by modifying behavior through fuels... Tags: California, Colorado, Ecology, Greater Sage-grouse, Idaho, All tags... Montana, Nevada, North Dakota, Oregon, South Dakota, USGS Science Data Catalog (SDC), Utah, Washington, Wyoming, biota, ecology, exotic grass, fires, fuel breaks, habitat alteration and disturbance, human impacts, land use change, sage-grouse, sagebrush ecosystem, shrubland ecosystems, vegetation, western United States, wildfire, wildfire suppression, Fewer tags Elevation and Mangrove Cover Projections under Sea-Level Rise Scenarios at J.N. Ding Darling National Wildlife Refuge, Sanibel Island, Florida, 2020-2100 Elevation projections from the WARMER-Mangroves model for J N. "Ding" Darling National Wildlife Refuge across a range of sea-level rise scenarios (53, 115, and 183 cm by 2100). The model was calibrated using dated soil cores sampled from the basin hydrologic zone. These data support the following publication: Buffington, K.J., Thorne, K.M., Krauss, K.W., Conrad, J.K., Drexler, J.Z., and Zhu, Z., in-review. Vulnerability of Sanibel Island’s mangrove resources to sea-level rise (Florida, USA). Categories: Data; Tags: Aquatic Biology, Ecology, Florida, Remote Sensing, Southern Florida, All tags... USGS Science Data Catalog (SDC), effects of climate change, elevation, modeling, sea-level change, Fewer tags Demographic Parameter Estimates for San Francisco Gartersnakes (Thamnophis sirtalis tetrataenia) for Fitting an Integral Projection Model A study comparing reintroduction scenarios for the San Francisco gartersnake (Thamnophis sirtalis tetrataenia), an endangered subspecies native to San Mateo County and Santa Cruz County in northern California. Models for snake survival, growth, fecundity, and reproductive status were used to construct a demographic population model. Data are posterior distributions for demographic parameters from Markov Chain Monte Carlo sampling in hierarchical Bayesian models. These data support the following publication: Rose, J.P., Kim, R., Schoening, E.J., Lien, P.C., and Halstead, B.J., 2023. Comparing reintroduction strategies for the endangered San Francisco gartersnake (Thamnophis sirtalis tetrataenia) using demographic... Categories: Data; Tags: California, San Mateo County, USGS Science Data Catalog (SDC), Wildlife Biology, biota, All tags... ecology, modeling, population dynamics, reptiles, Fewer tags A Century of Landscape Disturbance and Urbanization of the San Francisco Bay Region affects the Present-day Genetic Diversity of the California Ridgway’s Rail (Rallus obsoletus obsoletus) Fragmentation and loss of natural habitat have important consequences for wild populations and can negatively affect long-term viability and resilience to environmental change. Salt marsh obligate species, such as those that occupy the San Francisco Bay Estuary in western North America, occupy already impaired habitats as result of human development and modifications and are highly susceptible to increased habitat loss and fragmentation due to global climate change. We examined the genetic variation of the California Ridgway’s rail ( Rallus obsoletus obsoletus), a state and federally endangered species that occurs within the fragmented salt marsh of the San Francisco Bay Estuary. We genotyped 107 rails across 11... Categories: Data; Types: Citation, Map Service, OGC WFS Layer, OGC WMS Layer, OGC WMS Service; Tags: Clapper Rail, Fragmentation, Microsatellites, Population declines, Ridgway’s rail, All tags... San Francisco Bay, USGS Science Data Catalog (SDC), Fewer tags Greater Sage-Grouse Habitat Selection, Survival, Abundance, and Space-Use in the Bi-State Distinct Population Segment of California and Nevada Greater sage-grouse (Centrocercus urophasianus; hereinafter sage-grouse) is a sagebrush obligate species and widely considered an indicator species for sagebrush ecosystems and other sagebrush-dependent species (Hanser and Knick, 2011; Prochazka and others, 2023). Sagebrush ecosystems are threatened by a wide range of disturbances and anthropogenic factors, including climate change, severe drought, altered wildfire regimes, expansion of invasive species, and anthropogenic development. Collectively, these threats have led to reduced ecological integrity and sage-grouse habitat quality within the sagebrush biome (Doherty and others, 2022). Steady and long-term declines in sage-grouse populations have led to large-scale... Tags: Bi-State, California, Ecology, Land Use Change, Nevada, All tags... USGS Science Data Catalog (SDC), Wildlife Biology, animal behavior, biota, demographic response, ecology, greater sage-grouse, habitat selection, life stages, native species, reproduction, shrubland ecosystems, survival, Fewer tags Winter Season Habitat Categories Shapefile This shapefile represents habitat suitability categories (High, Moderate, Low, and Non-Habitat) derived from a composite, continuous surface of sage-grouse habitat suitability index (HSI) values for northeastern California during the winter season (November to March), and is a surrogate for habitat conditions during periods of cold and snow. Categories: Data; Types: Downloadable, Map Service, OGC WFS Layer, OGC WMS Layer, Shapefile; Tags: California, Great Basin, Greater sage-grouse, Habitat, Nevada, All tags... North America, Sagebrush Ecosystem Council, United States, biota, boundaries, environment, Fewer tags Microsatellite genotype scores for a contemporary, range-wide sample of Santa Ana sucker in southern California These data consist of microsatellite genotype scores for all samples of Santa Ana sucker (Catostomus santaanae) used in the study. Scores represent the allele calls for each microsatellite locus (i.e. DNA fragment length containing the microsatellite repeats), with each locus containing two scores representing the two allele copies detected. Included are five tables: Full dataset (includes genotypes from all samples), Santa Clara River samples only (includes genotypes only from samples collected in the Santa Clara River), Convert File format key (explains the data file format), Population identifiers (translates the numerical population identifiers to actual collecting sites), CASA sampling points (one coordinate... Tags: Los Angeles, San Gabriel, Santa Ana, Santa Clara River watersheds, USGS Science Data Catalog (SDC), All tags... admixture, dendritic network, endangered species, fish, genetics, hybridization, metapopulation, southern California, Fewer tags Impounded and tidal wetland plant diversity and composition across spatial scales, San Francisco Bay-Delta, California, USA (2016-2018) These datasets provide information on plant alpha, beta, and gamma diversity, and plant species abundance at several spatial scales for tidal wetlands along a salinity gradient in the San Francisco Bay-Delta and an impounded brackish wetland complex in Suisun Marsh, California. Files include diversity metrics calculated at the patch, site, and region scales, average percent cover of wetland dominant plants at the patch scale, and average percent cover of all wetland plants at the site scale. These data support the following paper: Jones, S.F., Janousek, C.N., Casazza, M.L., Takekawa, J.Y. and Thorne, K.M., 2021. Seasonal impoundment alters patterns of tidal wetland plant diversity across spatial scales. Ecosphere,... Categories: Data; Tags: Botany, California, San Francisco Bay-Delta Estuary, USGS Science Data Catalog (SDC), biodiversity, All tags... biota, coastal ecosystems, community composition, ecology, wetland impoundment, Fewer tags Summary of Stranded Southern Sea Otters, 1985-2018 (ver. 3.0, June 2021) The southern sea otter (Enhydra lutris nereis), also known as California sea otter, was listed as threatened in 1977 under the Endangered Species Act. Since 1985, stranded otters from throughout their California coastal range have been collected and analyzed to inform resource management on recovery and conservation of the species. This data set is a complete 34 year compilation. Future annual stranding recovery information will be published when available. Stranded sea otters were collected by members of the sea otter stranding network (USGS, California Department of Fish and Wildlife (CDFW), Monterey Bay Aquarium (MBA), and the Marine Mammal Center (TMMC)) during routine beach walks and (more often) following... Categories: Data Release - Revised; Tags: California, Marine Nearshore, Stranded southern sea otters, USGS Science Data Catalog (SDC), ecology, All tags... environment, health, health and disease, marine biology, marine ecosystems, sea otters, Fewer tags Greater Sage-grouse Nest Survival, Nevada and California 2019 Map of cumulative 38-day nest survival predicted from a Bayesian hierarchical shared frailty model of sage-grouse nest fates. The midpoint of coefficient conditional posterior distributions of 38-day nest survival were used for prediction at each 30 meter pixel across the landscape. Categories: Data; Types: Downloadable, GeoTIFF, Map Service, Raster; Tags: California, Great Basin, Nevada, Western U.S., biota, All tags... environment, geospatial analysis, habitat alteration, maladaptive habitat selection, nest survival, source-sink, Fewer tags Local Niche Model This dataset provides spatial predictions of the pooled-SDM residuals from a multiscale geographically weighted regression model (MGWR) and the resulting local R2 values for individuals in the subregion encompassing the genetic sampling locations used by Edwards et al. (2015). This region offered an opportunity to explore habitat selection across the ecotone between the Mojave and Sonoran deserts and the secondary contact zone between G. agassizii and G. morafkai, and is referred to as the focal study area. The raster layers contained here accompany the manuscript Inman et al. 2019 and were used to identify multivariate clusters and map them back to geographic space. Inman et al. 2019. Local niche differences predict... Tags: North America, North America, Western USA, animals, biota, All tags... conservation genetics, desert tortoise, deserts, ecological niche, genetics, geospatial analysis, habitats, multiscale geographically weighted regression, species distribution modelling, Fewer tags Monthly Trematode Infections of the Snail Cerithideopsis (Cerithidea) californica at Carpinteria Salt Marsh, California USA, February 2012 to January 2014 Each month (except March 2012), we collected detailed data on the infection status of intertidal snails from ten fixed sites as part of a broader effort to understand food webs in California Estuaries. The study site was Carpinteria Salt Marsh Reserve, California USA, (University of California Natural Reserve System), which comprises 9 Ha tidal channels, 2 Ha salt flats, 17 Ha upland habitat, 6 Ha tidal pans, 52 Ha vegetated marsh, 2 Ha tidal flats. Each site was a fixed location in channel or flat habitat, with a diameter approximately 50 m in size, centered at the site location marker used in Kuris et al. (2008). At each site/month, we collected, measured, sexed, and dissected ~58 snails (11,643 dissections total,... Categories: Data; Tags: California, Carpinteria, Carpinteria Salt Marsh Reserve, Santa Barbara County, USGS Science Data Catalog (SDC), All tags... distribution, estuary, habitat, mapping, salt marsh, snail, trematodes, Fewer tags Monthly densities of the snail Cerithideopsis (Cerithidea) californica at Carpinteria Salt Marsh, California USA, February 2012 to January 2014 Each month (except March 2012), we collected detailed data on the density, size distribution, and infection status of intertidal snails from ten fixed sites as part of a broader effort to understand food webs in California Estuaries. The study site was Carpinteria Salt Marsh Reserve, California USA, (University of California Natural Reserve System), which comprises 9 Ha tidal channels, 2 Ha salt flats, 17 Ha upland habitat, 6 Ha tidal pans, 52 Ha vegetated marsh, 2 Ha tidal flats. Each site was a fixed location in channel or flat habitat, with a diameter approximately 50m in size, centered at the site location marker used in Kuris et al. (2008). At each site/month, we collected, measured, sexed, and dissected ~58... Categories: Data; Tags: California, Carpinteria, Carpinteria Salt Marsh Reserve, Santa Barbara County, USGS Science Data Catalog (SDC), All tags... density, distribution, estuary, habitat, mapping, salt marsh, snail, trematodes, Fewer tags Nest Data for White-faced Ibis in Bear River Migratory Bird Refuge, Great Salt Lake, Utah in Summer 2012 Nest monitoring data of white-faced ibis. Data were collected at seven day intervals and provide information on success and failure of the nest during that interval. Summary vegetation and habitat data were also collected at the nest. These data support the following publication: Herzog, M.P., Ackerman, J.T., Hartman, C.A. and Browers, H., 2020. Nesting ecology of White-faced Ibis (Plegadis chihi) in Great Salt Lake, Utah. The Wilson Journal of Ornithology, 132(1), pp.134-144. Categories: Data; Tags: Bear River Migratory Bird Refuge, USGS Science Data Catalog (SDC), biota, birds, field inventory and monitoring, All tags... vegetation, wildlife, Fewer tags Population Estimates for Selected Breeding Seabirds at Kīlauea Point National Wildlife Refuge, Kauaʻi, in 2019 This data relase is a product of Atlas of Breeding Seabirds of the Main Hawaiian Islands Kīlauea Point National Wildlife Refuge (KPNWR) is an important seabird breeding site located at the northeastern tip of Kauaʻi in the main Hawaiian Islands (MHI). Despite the regional significance of KPNWR as one of the most important breeding sites for Red-tailed Tropicbirds (Phaethon rubricauda), Red-footed Boobies (Sula sula), and Wedge-tailed Shearwaters (Ardenna pacifica) in MHI, robust and accurate population surveys have not been consistently conducted and recent information is lacking. In this study, we completed comprehensive population surveys for these three species during the 2019 breeding season. Using direct censusing... Tags: Kauai, USGS Science Data Catalog (SDC), USGS-EMA-LOW-SB SMC: Seabirds, Wildlife Biology, aerial photography, All tags... animal and plant census, biota, plot sampling, Fewer tags LEAN-Corrected Collier County DEM for wetlands Lidar-derived digital elevation models often contain a vertical bias due to vegetation. In areas with tidal influence the amount of bias can be ecologically significant, for example, by decreasing the expected inundation frequency. We generated a corrected digital elevation model (DEM) for wetlands throughout Collier county using a modification of the Lidar Elevation Adjustment with NDVI (LEAN) technique (Buffington et al. 2016). GPS survey data (15,223 points), NAIP-derived Normalized Difference Vegetation Index (2010), a 10 m lidar DEM from 2007, and a 10 m canopy surface model were used to generate a model of predicted bias across marsh, mangrove, and cypress habitats. The predicted bias was then subtracted from... Categories: Data; Types: ArcGIS REST Map Service, ArcGIS Service Definition, Downloadable, GeoTIFF, Map Service, Raster; Tags: Collier county, Remote Sensing, USGS Science Data Catalog (SDC), biota, cypress, All tags... digital elevation models, estuary, lidar, mangroves, marsh, wetlands, Fewer tags Geospatial Data Collected from Tagged Sea Otters in Central California, 1998-2012 The data are .csv files of tagged sea otter re-sighting locations (henceforth, resights) collected in the field using a combination of VHF radio telemetry and direct observation using high powered (80x) telescopes. Sea otters were tracked by shore based observers from the date of tagging until the time of radio battery failure or the animal’s death, whichever comes first. The frequency of re-sighting was opportunistic, depending on logistical factors such as coastal access, but generally ranged from daily to weekly. Location coordinates are reported as X and Y coordinates in the projection/datum California Teale-Albers NAD 1927. Each file contains resight data for one individual sea otter collected over a period... Categories: Data; Types: ArcGIS REST Map Service, ArcGIS Service Definition, Citation, Downloadable, Map Service; Tags: California, Half Moon Bay, Santa Barbara, Santa Barbara Channel Islands, Southern sea otter, All tags... USGS Science Data Catalog (SDC), VHF radio telemetry, animal movement, sighting locations, space use, Fewer tags Data Maps of Predicted Raven Density and Areas of Potential Impact to Nesting Sage-grouse within Sagebrush Ecosystems of the North American Great Basin These data represent predicted common raven (Corvus corax) density (ravens/square-km) derived from random forest models given field site unit-specific estimates of raven density that were obtained from hierarchical distance sampling models at 43 field site units within the Great Basin region, USA. Fifteen landscape-level predictors summarizing climate, vegetation, topography and anthropogenic footprint were used to predict average raven density at each unit. A raven density of greater than or equal to 0.40 ravens/square-km corresponds to below-average survival rates of sage-grouse (Centrocercus urophasianus) nests. We mapped areas which exceed this threshold within sage-grouse concentration areas to determine where... Tags: Birds, California, Idaho, Nevada, Oregon, All tags... Sage-grouse, The Great Basin, USGS Science Data Catalog (SDC), Utah, Wildlife, Wildlife Biology, biota, density, population and community ecology, raven, Fewer tags Breeding Waterbird Populations in South San Francisco Bay 2005-2019 The dataset includes three separate excel spreadsheets which provides waterbird (and predator) observations within individual survey units during the May 2019 breeding waterbird survey of south San Francisco Bay (2019WaterbirdSurveyFullData.xlsx), the total number of American avocets, black-necked stilts, and Forster's terns within each pond unit surveyed during the May 2019 survey (2019WaterbirdSurveyPondModel.xlsx), and the annual total number of nests for American avocets, black-necked stilts, and Forster's terns in south San Francisco between 2005 and 2019 (SouthBayWaterbirdNests2005-2019.xlsx). These data support the following publication: Hartman, C.A., Ackerman, J.T., Schacter, C.R., Herzog, M.P., Tarjan,... Categories: Data; Tags: San Francisco Bay, USGS Science Data Catalog (SDC), Wildlife Biology, biota, birds, All tags... estuarine ecosystems, land use change, long-term ecological monitoring, migratory species, population dynamics, wetland ecosystems, Fewer tags « 1 2 3 4 5 6 ... 20 »